NO17G01070.1, NO17G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01070.1
Unique NameNO17G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1968
Alignment locationchr17:335819..337786 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:335819..337786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G01070.1 vs.
Match: CBJ33391.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.9 bits (346), Expect = 1.100e-28
Identity = 138/427 (32.32%), Postives = 208/427 (48.71%), Query Frame = 0 
Query:   13 LQSIVTRLHEPPFSLSFPGGVHDLAAEPPNALLQLLYHILSYLEPCMALDVKTASEDERVARTVDFLSMLKCPFLMPATDEEGEAMLVQGLLLGDKATLFPVLAWCLNNLSHLHRRAYLGRYLMPVDVPFDHSQTQDPTLADLHARFRGLQEEFTSVHKAFEEVRAAIGTTNSCEIRAQIKQLEEEKHQLEENVERMARVGQREVGFNEMLSLTRAVREEEEDERRLRGKLAEERHAFEISERRVQALGLALEEEGKRRRG--RKGGRSRTPFDIQDQATAEMLVEELQEEVRRLRYQVTEQLPLEIEKAQLYFGRKEGIEGRHQHQNQQRQQLERVGREDMEKVVYDVKRAELHVQYWKAKIDEKIIKSGGAINPSSNNGKRKAE-EGRRERGKERGSDDKFLHLRERALVAAIAGMEKEGELEML 437
            +Q IV +L+EPPFS        D   + P  LLQ L  I + ++P   +  +    D    R + FL MLK P  +P  + EG     +GL +GDK  ++P + WCL  L  L +RAYL RYLMPV+VP +    QD  L DLH   R LQ EF + HK  ++ R         E+R +I QLE+EK QL E + ++      E GF EML +T  +R+ +E+   L  K  ++R     +E R         E+ +RR G  R+G  S T        TA  ++ +LQ EV  L  ++T+ LP EI +      R   +E   +   + ++  E V  ++ME++ Y ++R     +       ++I K+     P+    K++AE EG  ER +E           ERA +AA    +KE ++E L
Sbjct:    4 IQFIVDKLNEPPFSKDLRLVTFD--EKSPADLLQQLNEIFTAIDP-QQMSEQDEPGDASTTRMMSFLVMLKFP--IPDHEREG---FRRGLAVGDKEVVYPAMHWCLQRLPQLKKRAYLARYLMPVEVPMEF--MQDQALIDLHESHRQLQAEFKATHKQVDQTRNT--DLRPGELRTEIGQLEDEKKQLTEKISKLKANVSEEPGFAEMLDVTSRLRKAQEEMAELGAKSIQQRGQLHQAETRA--------EDARRRLGVLRQGTASAT--------TAAAVLGQLQREVAALDNKLTQVLPTEIGQ------RARKLEQLEREAAEPQRSREDV--QEMEQLEYQLRRENEQTR-------QQIEKALADRQPAGLAAKKRAEKEGEWERLQE-----------ERAKLAAEI-EDKESKMEGL 375
The following BLAST results are available for this feature:
BLAST of NO17G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ33391.11.100e-2832.32conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01070NO17G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01070.1NO17G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01070.1.cds1NO17G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01070.1 ID=NO17G01070.1|Name=NO17G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp
ACCACAGGCAAACGTAGCCATGCCAGATCCTGGCCAAGACAAAGGCTTAA
CGCTACTACAATCAATCGTCACCCGGCTGCACGAACCTCCCTTCTCCCTG
TCGTTCCCCGGAGGAGTCCATGACCTCGCCGCCGAGCCTCCCAACGCCCT
CCTGCAGCTCCTGTACCACATCCTCTCGTATCTCGAGCCTTGCATGGCCC
TAGATGTCAAGACCGCGTCGGAAGACGAGCGTGTGGCACGCACGGTAGAT
TTTCTTAGCATGCTCAAGTGTCCTTTCTTAATGCCTGCCACGGATGAAGA
GGGGGAAGCAATGCTGGTCCAGGGCCTGCTACTAGGTGATAAGGCTACCC
TTTTTCCTGTTCTGGCATGGTGCCTCAATAATCTCTCCCATCTCCACCGA
CGGGCGTACCTGGGGAGATACCTCATGCCCGTGGATGTCCCATTCGACCA
CTCACAAACACAAGACCCTACTCTTGCTGACTTGCACGCCAGGTTTCGCG
GGCTCCAAGAGGAATTTACTTCCGTGCACAAAGCGTTCGAAGAGGTACGA
GCAGCCATAGGAACCACCAACTCATGCGAGATCCGCGCACAAATTAAGCA
GCTTGAGGAGGAGAAACATCAGTTGGAGGAGAACGTTGAACGGATGGCCA
GGGTGGGTCAGAGAGAGGTAGGGTTTAACGAGATGCTTTCTTTGACAAGA
GCAGTGAGGGAGGAAGAGGAGGATGAACGACGGTTGAGGGGTAAGTTGGC
CGAGGAAAGGCATGCGTTCGAGATAAGTGAGCGACGGGTGCAGGCGCTGG
GATTAGCGTTGGAGGAAGAGGGGAAGAGGAGAAGAGGGAGGAAGGGAGGG
AGATCACGGACCCCGTTTGACATTCAAGATCAAGCAACAGCTGAGATGTT
GGTGGAGGAGCTTCAGGAAGAGGTGAGACGTTTGCGGTACCAAGTGACGG
AGCAACTCCCTTTGGAGATAGAGAAAGCCCAGCTTTATTTTGGAAGGAAG
GAAGGGATAGAAGGGAGGCATCAGCACCAGAACCAGCAGCGGCAGCAGCT
CGAGAGGGTGGGGAGGGAGGACATGGAGAAGGTTGTTTACGATGTGAAGC
GGGCAGAGCTTCATGTGCAATATTGGAAGGCCAAAATAGACGAGAAGATT
ATAAAGAGTGGTGGTGCGATCAATCCGAGCAGCAACAATGGAAAGAGAAA
AGCTGAAGAAGGAAGGAGGGAGAGAGGAAAGGAGAGGGGTAGCGATGACA
AATTTTTGCACTTGAGGGAACGTGCGCTGGTGGCTGCGATTGCGGGGATG
GAAAAGGAGGGGGAGTTAGAGATGCTGTTGCTTAGGCAGCAGCAGCAGCA
GCAGCAGCTAGACCGGTTGTCTGTGGATAGACGTGTGCATGAGCAAGCAA
AGGAGAGACTAGAATCTCAAATAACGAGTAGAGAAGGGTATCCTTTGTAC
CAGGGGGCAGGAGCGAAAGCGGCAGTGGCGGCAAGAGCTGAACGAGGAGT
TGAAGTAGTAGGGGTGACAAGAAGAAGCATGAAAGACGCAGAGGGTTGTG
GTGCTGACGGTGATGGTGATGGTGATAGAGGGACACAGGATGAGTTAACC
GAGGCATTGCGGAAAATTAATGAAGAACTCAGAGAAGAAAAACGTCGCCT
ACAACCACTGGTCAAGGTACTGAAGGAGGGACGGAAGGAGGCAGGGATCT
TAGAGGAAGAGCATCGCTTGCGTAAAGCTCAGTATGAGAGGGTGATGATG
ATGTCAAGAAGGGAGGGAGTAAAGGAAGACAGGGAGGGAGAGAGGGAAAT
GCTAGCGCTTAAGACGTTGCTGGAGGTGAAGTTGAGCGTGGAGGGAGACG
GACGGGGAAGGGCAGCGCGGCAACAACCGCAACAACAGTATTAGCATCAG
GAAAGCGATGCATGGTGTCCATTGCATCGCTAACGGTGATGGCAACCAAA
ACCAAGGAACGTAAATAG
back to top

protein sequence of NO17G01070.1

>NO17G01070.1-protein ID=NO17G01070.1-protein|Name=NO17G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MPDPGQDKGLTLLQSIVTRLHEPPFSLSFPGGVHDLAAEPPNALLQLLYH
ILSYLEPCMALDVKTASEDERVARTVDFLSMLKCPFLMPATDEEGEAMLV
QGLLLGDKATLFPVLAWCLNNLSHLHRRAYLGRYLMPVDVPFDHSQTQDP
TLADLHARFRGLQEEFTSVHKAFEEVRAAIGTTNSCEIRAQIKQLEEEKH
QLEENVERMARVGQREVGFNEMLSLTRAVREEEEDERRLRGKLAEERHAF
EISERRVQALGLALEEEGKRRRGRKGGRSRTPFDIQDQATAEMLVEELQE
EVRRLRYQVTEQLPLEIEKAQLYFGRKEGIEGRHQHQNQQRQQLERVGRE
DMEKVVYDVKRAELHVQYWKAKIDEKIIKSGGAINPSSNNGKRKAEEGRR
ERGKERGSDDKFLHLRERALVAAIAGMEKEGELEMLLLRQQQQQQQLDRL
SVDRRVHEQAKERLESQITSREGYPLYQGAGAKAAVAARAERGVEVVGVT
RRSMKDAEGCGADGDGDGDRGTQDELTEALRKINEELREEKRRLQPLVKV
LKEGRKEAGILEEEHRLRKAQYERVMMMSRREGVKEDREGEREMLALKTL
LEVKLSVEGDGRGRAARQQPQQQY*
back to top

mRNA from alignment at chr17:335819..337786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01070.1 ID=NO17G01070.1|Name=NO17G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp|location=Sequence derived from alignment at chr17:335819..337786+ (Nannochloropsis oceanica)
ACCACAGGCAAACGTAGCCATGCCAGATCCTGGCCAAGACAAAGGCTTAA
CGCTACTACAATCAATCGTCACCCGGCTGCACGAACCTCCCTTCTCCCTG
TCGTTCCCCGGAGGAGTCCATGACCTCGCCGCCGAGCCTCCCAACGCCCT
CCTGCAGCTCCTGTACCACATCCTCTCGTATCTCGAGCCTTGCATGGCCC
TAGATGTCAAGACCGCGTCGGAAGACGAGCGTGTGGCACGCACGGTAGAT
TTTCTTAGCATGCTCAAGTGTCCTTTCTTAATGCCTGCCACGGATGAAGA
GGGGGAAGCAATGCTGGTCCAGGGCCTGCTACTAGGTGATAAGGCTACCC
TTTTTCCTGTTCTGGCATGGTGCCTCAATAATCTCTCCCATCTCCACCGA
CGGGCGTACCTGGGGAGATACCTCATGCCCGTGGATGTCCCATTCGACCA
CTCACAAACACAAGACCCTACTCTTGCTGACTTGCACGCCAGGTTTCGCG
GGCTCCAAGAGGAATTTACTTCCGTGCACAAAGCGTTCGAAGAGGTACGA
GCAGCCATAGGAACCACCAACTCATGCGAGATCCGCGCACAAATTAAGCA
GCTTGAGGAGGAGAAACATCAGTTGGAGGAGAACGTTGAACGGATGGCCA
GGGTGGGTCAGAGAGAGGTAGGGTTTAACGAGATGCTTTCTTTGACAAGA
GCAGTGAGGGAGGAAGAGGAGGATGAACGACGGTTGAGGGGTAAGTTGGC
CGAGGAAAGGCATGCGTTCGAGATAAGTGAGCGACGGGTGCAGGCGCTGG
GATTAGCGTTGGAGGAAGAGGGGAAGAGGAGAAGAGGGAGGAAGGGAGGG
AGATCACGGACCCCGTTTGACATTCAAGATCAAGCAACAGCTGAGATGTT
GGTGGAGGAGCTTCAGGAAGAGGTGAGACGTTTGCGGTACCAAGTGACGG
AGCAACTCCCTTTGGAGATAGAGAAAGCCCAGCTTTATTTTGGAAGGAAG
GAAGGGATAGAAGGGAGGCATCAGCACCAGAACCAGCAGCGGCAGCAGCT
CGAGAGGGTGGGGAGGGAGGACATGGAGAAGGTTGTTTACGATGTGAAGC
GGGCAGAGCTTCATGTGCAATATTGGAAGGCCAAAATAGACGAGAAGATT
ATAAAGAGTGGTGGTGCGATCAATCCGAGCAGCAACAATGGAAAGAGAAA
AGCTGAAGAAGGAAGGAGGGAGAGAGGAAAGGAGAGGGGTAGCGATGACA
AATTTTTGCACTTGAGGGAACGTGCGCTGGTGGCTGCGATTGCGGGGATG
GAAAAGGAGGGGGAGTTAGAGATGCTGTTGCTTAGGCAGCAGCAGCAGCA
GCAGCAGCTAGACCGGTTGTCTGTGGATAGACGTGTGCATGAGCAAGCAA
AGGAGAGACTAGAATCTCAAATAACGAGTAGAGAAGGGTATCCTTTGTAC
CAGGGGGCAGGAGCGAAAGCGGCAGTGGCGGCAAGAGCTGAACGAGGAGT
TGAAGTAGTAGGGGTGACAAGAAGAAGCATGAAAGACGCAGAGGGTTGTG
GTGCTGACGGTGATGGTGATGGTGATAGAGGGACACAGGATGAGTTAACC
GAGGCATTGCGGAAAATTAATGAAGAACTCAGAGAAGAAAAACGTCGCCT
ACAACCACTGGTCAAGGTACTGAAGGAGGGACGGAAGGAGGCAGGGATCT
TAGAGGAAGAGCATCGCTTGCGTAAAGCTCAGTATGAGAGGGTGATGATG
ATGTCAAGAAGGGAGGGAGTAAAGGAAGACAGGGAGGGAGAGAGGGAAAT
GCTAGCGCTTAAGACGTTGCTGGAGGTGAAGTTGAGCGTGGAGGGAGACG
GACGGGGAAGGGCAGCGCGGCAACAACCGCAACAACAGTATTAGCATCAG
GAAAGCGATGCATGGTGTCCATTGCATCGCTAACGGTGATGGCAACCAAA
ACCAAGGAACGTAAATAG
back to top

Coding sequence (CDS) from alignment at chr17:335819..337786+

>NO17G01070.1 ID=NO17G01070.1|Name=NO17G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at chr17:335819..337786+ (Nannochloropsis oceanica)
ATGCCAGATCCTGGCCAAGACAAAGGCTTAACGCTACTACAATCAATCGT
CACCCGGCTGCACGAACCTCCCTTCTCCCTGTCGTTCCCCGGAGGAGTCC
ATGACCTCGCCGCCGAGCCTCCCAACGCCCTCCTGCAGCTCCTGTACCAC
ATCCTCTCGTATCTCGAGCCTTGCATGGCCCTAGATGTCAAGACCGCGTC
GGAAGACGAGCGTGTGGCACGCACGGTAGATTTTCTTAGCATGCTCAAGT
GTCCTTTCTTAATGCCTGCCACGGATGAAGAGGGGGAAGCAATGCTGGTC
CAGGGCCTGCTACTAGGTGATAAGGCTACCCTTTTTCCTGTTCTGGCATG
GTGCCTCAATAATCTCTCCCATCTCCACCGACGGGCGTACCTGGGGAGAT
ACCTCATGCCCGTGGATGTCCCATTCGACCACTCACAAACACAAGACCCT
ACTCTTGCTGACTTGCACGCCAGGTTTCGCGGGCTCCAAGAGGAATTTAC
TTCCGTGCACAAAGCGTTCGAAGAGGTACGAGCAGCCATAGGAACCACCA
ACTCATGCGAGATCCGCGCACAAATTAAGCAGCTTGAGGAGGAGAAACAT
CAGTTGGAGGAGAACGTTGAACGGATGGCCAGGGTGGGTCAGAGAGAGGT
AGGGTTTAACGAGATGCTTTCTTTGACAAGAGCAGTGAGGGAGGAAGAGG
AGGATGAACGACGGTTGAGGGGTAAGTTGGCCGAGGAAAGGCATGCGTTC
GAGATAAGTGAGCGACGGGTGCAGGCGCTGGGATTAGCGTTGGAGGAAGA
GGGGAAGAGGAGAAGAGGGAGGAAGGGAGGGAGATCACGGACCCCGTTTG
ACATTCAAGATCAAGCAACAGCTGAGATGTTGGTGGAGGAGCTTCAGGAA
GAGGTGAGACGTTTGCGGTACCAAGTGACGGAGCAACTCCCTTTGGAGAT
AGAGAAAGCCCAGCTTTATTTTGGAAGGAAGGAAGGGATAGAAGGGAGGC
ATCAGCACCAGAACCAGCAGCGGCAGCAGCTCGAGAGGGTGGGGAGGGAG
GACATGGAGAAGGTTGTTTACGATGTGAAGCGGGCAGAGCTTCATGTGCA
ATATTGGAAGGCCAAAATAGACGAGAAGATTATAAAGAGTGGTGGTGCGA
TCAATCCGAGCAGCAACAATGGAAAGAGAAAAGCTGAAGAAGGAAGGAGG
GAGAGAGGAAAGGAGAGGGGTAGCGATGACAAATTTTTGCACTTGAGGGA
ACGTGCGCTGGTGGCTGCGATTGCGGGGATGGAAAAGGAGGGGGAGTTAG
AGATGCTGTTGCTTAGGCAGCAGCAGCAGCAGCAGCAGCTAGACCGGTTG
TCTGTGGATAGACGTGTGCATGAGCAAGCAAAGGAGAGACTAGAATCTCA
AATAACGAGTAGAGAAGGGTATCCTTTGTACCAGGGGGCAGGAGCGAAAG
CGGCAGTGGCGGCAAGAGCTGAACGAGGAGTTGAAGTAGTAGGGGTGACA
AGAAGAAGCATGAAAGACGCAGAGGGTTGTGGTGCTGACGGTGATGGTGA
TGGTGATAGAGGGACACAGGATGAGTTAACCGAGGCATTGCGGAAAATTA
ATGAAGAACTCAGAGAAGAAAAACGTCGCCTACAACCACTGGTCAAGGTA
CTGAAGGAGGGACGGAAGGAGGCAGGGATCTTAGAGGAAGAGCATCGCTT
GCGTAAAGCTCAGTATGAGAGGGTGATGATGATGTCAAGAAGGGAGGGAG
TAAAGGAAGACAGGGAGGGAGAGAGGGAAATGCTAGCGCTTAAGACGTTG
CTGGAGGTGAAGTTGAGCGTGGAGGGAGACGGACGGGGAAGGGCAGCGCG
GCAACAACCGCAACAACAGTATTAG
back to top
Synonyms
Publications