NO17G01000.1, NO17G01000.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G01000.1
Unique Name	NO17G01000.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1762
Alignment location	chr17:319369..322102 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:319369..322102 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO17G01000.1 vs.
Match: EWM21124.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 778.5 bits (2009), Expect = 1.500e-221
Identity = 388/620 (62.58%), Postives = 450/620 (72.58%), Query Frame = 0

Query:   14 VLLVVATTTCCLFTVNAQLEPQYIPASTADSVTCYPADSLAWRSVPGKMVVHGAPFVKKPTAPVPPAPPMREPGRPLPVDV--GVGPAGGFETA-----------------PRPPMRLPQQQQQQPFM---------------RPPAGNTRPGPNMNPVVSQQRAIPAVRFLQEGQE-----HQKVAGAVVDGVGIETPDWMG-QGDELTEEDKAAIARESMYANIQIKGLNW---------------TIDEVIAFLIDHKINAIRLPFSLEFALTPMDVQEAKAGGGFGELQYPDRGKISPAYYGMTSWEIIDILFKTAGENGILILLDMHMLDPAKGVSRLWYDPEKYSEATVMWGW--------GHWNLFGLDVMNECHDHASWGTGNPMTDFNSYVERFMLFINERVPEYRGLFFVEGVFLNGDGRDPGPYPYWWGGNLMGADKHPIDTKIAALNDRVVYAPHIYGPDVSNMLYFNDFRFPNNLRNVWDLQFGWLIKSTRKALVVGEWGGSCKNKDGVVQEHLAEWMVENCFQSNFWWALNPGSSDTDGLMSPDWSHFDPFKMNLLGKVQPDPSTFTFDKASNQVCIRHGAPPNPQCASNIDAVASRQPSQVGYDN 571
            +L + A   C + ++ AQLEPQY+PA++++SVTCYPAD+LAWRS+PGK+V+HGAPFVK     VPPA    +P  P+  D   G G AGG                     P+PP+  P  Q  QP +                 P G  RP PNM+P    +   PAVR LQ  +       QKVAGAVV GV IE       + D+L EEDKAAIARESMYA+IQ+KGLNW               TID+V+AF + H INA+RLPFSL FALTPMD +EA+AGGG GELQYPDRGKISP Y G+TSWEIID+LF+ A ENGILILLDMH LDP KGVSRLWYDP KYSEATV+WGW         HWNLFGLD+MNECHDHASWG G+PMTDFN YVERF+LF++ERVP YRGLFFVEG+FLN  GRD  P+PYWWGGNL GADK+PID KIAALNDR+VYAPHIYGPDVSNM YFND+ FPNNL+NVWD QFGWLIKSTRKALVVGEWGGSC NKDG+VQEHLA+WM++NCFQSNFWWALNPGS+DTDGLMS DWSHFD  KM LLGKVQP+PS FT++KA++ VC+RHGAPPNPQCA ++  +     +Q   DN
Sbjct:   12 ILCINAAIACLVTSIYAQLEPQYVPAASSESVTCYPADALAWRSIPGKIVLHGAPFVKTHHKKVPPA----QPSEPIVTDPSGGGGAAGGIRPGGGVTPEPQPKPINGVKPPQPPVTAPPAQVAQPIVPFPGAAGPGVPGPQGGVPGGAGRPLPNMDPFRPPELK-PAVRHLQTQEAAKAGGDQKVAGAVVGGVAIENGSGTAREEDDLDEEDKAAIARESMYASIQLKGLNWFGLDRINIFEGTNYKTIDQVMAFFVAHNINALRLPFSLAFALTPMDHEEAEAGGGQGELQYPDRGKISPEYIGLTSWEIIDLLFEKAKENGILILLDMHTLDPDKGVSRLWYDPAKYSEATVLWGWERILSRYVHHWNLFGLDIMNECHDHASWGKGDPMTDFNRYVERFILFVHERVPSYRGLFFVEGIFLNAMGRDQSPWPYWWGGNLFGADKYPIDVKIAALNDRIVYAPHIYGPDVSNMFYFNDWSFPNNLKNVWDNQFGWLIKSTRKALVVGEWGGSCNNKDGIVQEHLAQWMIDNCFQSNFWWALNPGSADTDGLMSQDWSHFDERKMALLGKVQPNPSKFTYEKATDMVCVRHGAPPNPQCADDLAHILKTPDTQQDQDN 626

The following BLAST results are available for this feature:

BLAST of NO17G01000.1 vs.

BLAST of NO17G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21124.1	1.500e-221	62.58	cellulase 2 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G01000	NO17G01000	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G01000.1	NO17G01000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G01000.1.cds1	NO17G01000.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01000.1.cds2	NO17G01000.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01000.1.cds3	NO17G01000.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01000.1.cds4	NO17G01000.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01000.1.cds5	NO17G01000.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01000.1.cds6	NO17G01000.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01000.1.cds7	NO17G01000.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:319369..322102+
coding sequence from alignment at chr17:319369..322102+

mRNA sequence

>NO17G01000.1 ID=NO17G01000.1|Name=NO17G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp
AGGATTATTTCTGTCCACCACAGAGATGTACCTGTCTTATAACATTCACC
GGGCCAGCGGGTGGGTGCTTTTGGTGGTGGCCACGACCACTTGCTGCCTA
TTCACGGTCAATGCGCAACTCGAGCCCCAATACATCCCGGCCTCGACGGC
TGATAGCGTGACATGCTACCCCGCCGACTCCCTCGCTTGGCGTTCCGTGC
CCGGAAAAATGGTCGTGCATGGGGCACCTTTCGTCAAGAAACCTACGGCA
CCCGTTCCCCCCGCGCCACCCATGCGCGAACCCGGCAGGCCACTCCCCGT
AGACGTGGGCGTAGGCCCTGCGGGAGGCTTCGAGACTGCACCCAGGCCTC
CTATGCGACTGCCACAGCAGCAGCAACAACAACCATTTATGAGGCCCCCT
GCAGGGAATACGCGGCCAGGGCCCAATATGAACCCGGTGGTTTCCCAACA
GCGGGCCATCCCGGCCGTGCGGTTCTTACAGGAGGGACAGGAGCACCAGA
AGGTGGCAGGCGCGGTGGTGGATGGCGTGGGGATCGAAACACCAGATTGG
ATGGGACAGGGAGATGAGTTAACGGAAGAAGACAAGGCTGCAATTGCTCG
TGAGTCGATGTATGCCAACATTCAGATCAAGGGTTTGAACTGGACCATCG
ACGAAGTGATTGCCTTTTTGATTGACCATAAGATCAATGCGATCCGTTTG
CCTTTCTCCCTGGAGTTCGCGCTCACGCCCATGGACGTGCAGGAGGCAAA
GGCTGGGGGGGGATTCGGGGAACTTCAATACCCGGATCGGGGGAAGATCT
CGCCCGCATATTACGGAATGACGAGCTGGGAAATCATTGACATTCTTTTC
AAGACAGCAGGCGAGAACGGCATTTTGATTTTGCTCGATATGCACATGCT
GGATCCAGCAAAGGGCGTGAGTCGATTGTGGTACGACCCCGAGAAGTATT
CAGAGGCCACTGTTATGTGGGGTTGGGGCCATTGGAATCTTTTTGGGTTG
GACGTCATGAACGAGTGTCACGACCATGCTTCTTGGGGCACGGGCAACCC
CATGACCGACTTTAATTCTTACGTTGAACGATTCATGCTGTTCATCAACG
AGAGAGTCCCAGAGTACCGCGGGCTCTTTTTTGTGGAAGGGGTCTTCCTT
AACGGAGATGGGCGCGATCCCGGGCCTTATCCGTACTGGTGGGGTGGGAA
CCTGATGGGGGCTGACAAACACCCTATTGATACCAAGATTGCTGCCCTGA
ACGATCGTGTGGTGTACGCGCCCCACATTTACGGACCCGATGTGTCGAAC
ATGCTTTATTTCAACGATTTCCGCTTCCCCAACAACTTGAGGAATGTATG
GGACCTCCAATTCGGCTGGCTTATCAAAAGCACGCGCAAAGCCCTGGTGG
TGGGAGAATGGGGAGGCAGCTGCAAAAACAAGGACGGCGTCGTGCAAGAG
CACCTTGCTGAATGGATGGTCGAAAATTGTTTTCAGTCCAACTTCTGGTG
GGCACTTAATCCCGGATCGTCTGACACCGACGGCCTCATGTCTCCAGACT
GGTCCCATTTCGATCCCTTTAAAATGAACCTGTTGGGAAAGGTGCAGCCC
GACCCCTCTACCTTCACCTTCGACAAAGCCAGCAATCAAGTTTGTATCCG
TCACGGCGCCCCACCCAATCCCCAATGCGCCAGTAATATCGATGCTGTTG
CGTCGCGGCAGCCTAGCCAGGTAGGGTATGATAACCCCTCACCAATGCGT
GGTCGGCCGTGA

protein sequence of NO17G01000.1

>NO17G01000.1-protein ID=NO17G01000.1-protein|Name=NO17G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MYLSYNIHRASGWVLLVVATTTCCLFTVNAQLEPQYIPASTADSVTCYPA
DSLAWRSVPGKMVVHGAPFVKKPTAPVPPAPPMREPGRPLPVDVGVGPAG
GFETAPRPPMRLPQQQQQQPFMRPPAGNTRPGPNMNPVVSQQRAIPAVRF
LQEGQEHQKVAGAVVDGVGIETPDWMGQGDELTEEDKAAIARESMYANIQ
IKGLNWTIDEVIAFLIDHKINAIRLPFSLEFALTPMDVQEAKAGGGFGEL
QYPDRGKISPAYYGMTSWEIIDILFKTAGENGILILLDMHMLDPAKGVSR
LWYDPEKYSEATVMWGWGHWNLFGLDVMNECHDHASWGTGNPMTDFNSYV
ERFMLFINERVPEYRGLFFVEGVFLNGDGRDPGPYPYWWGGNLMGADKHP
IDTKIAALNDRVVYAPHIYGPDVSNMLYFNDFRFPNNLRNVWDLQFGWLI
KSTRKALVVGEWGGSCKNKDGVVQEHLAEWMVENCFQSNFWWALNPGSSD
TDGLMSPDWSHFDPFKMNLLGKVQPDPSTFTFDKASNQVCIRHGAPPNPQ
CASNIDAVASRQPSQVGYDNPSPMRGRP*

mRNA from alignment at chr17:319369..322102+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G01000.1 ID=NO17G01000.1|Name=NO17G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2734bp|location=Sequence derived from alignment at chr17:319369..322102+ (Nannochloropsis oceanica)
AGGATTATTTCTGTCCACCACAGAGATGTACCTGTCTTATAACATTCACC
GGGCCAGCGGGTGGGTGCTTTTGGTGGTGGCCACGACCACTTGCTGCCTA
TTCACGGTCAATGCGCAACTCGAGCCCCAATACATCCCGGCCTCGACGGC
TGATAGCGTGACATGCTACCCCGCCGACTCCCTCGCTTGGCGTTCCGTGC
CCGGAAAAATGGTCGTGCATGGGGCACCTTTCGTCAAGAAACCTACGGCA
CCCGTTCCCCCCGCGCCACCCATGCGCGAACCCGGCAGGCCACTCCCCGT
AGACGTGGGCGTAGGCCCTGCGGGAGGCTTCGAGACTGCACCCAGGCCTC
CTATGCGACTGCCACAGCAGCAGCAACAACAACCATTTATGAGGCCCCCT
GCAGGGAATACGCGGCCAGGGCCCAATATGAACCCGGTGGTTTCCCAACA
GCGGGCCATCCCGGCCGTGCGGTTCTTACAGGAGGGACAGGAGCACCAGA
AGGTGGCAGGCGCGGTGGTGGATGGCGTGGGGATCGAAACACCAGATTGG
ATGGGACAGGGAGATGAGTTAACGGAAGAAGACAAGGCTGCAATTGCTCG
TGAGTCGATGTATGCCAACATTCAGATCAAGGGTTTGAACTGGGTACGTC
TGATGAGAAAGAGGAAAGGAGGGGAGGTGGGGCTTACCCTCTGGGGTATG
AGCAAAGCTCAAACATCAACATCATTAAAATATTCACTATTTAATCGCAT
CCATGCACACAGTTTGGCTTGGACCGAATTAACATCTTCGAGGGGACTAA
CTACAAGGTATACGGAAGGGAGGGAAAGGCGGAACATGGGGCTGATTGGG
CAGTCCCTCTATGATCTACCGTCCCTCTCACATTCTCTTTGGGAGCCGTG
CCTCCCTTCTTTTCTAATACACAGACCATCGACGAAGTGATTGCCTTTTT
GATTGACCATAAGATCAATGCGATCCGTTTGCCTTTCTCCCTGGAGTTCG
CGCTCACGCCCATGGACGTGCAGGAGGCAAAGGCTGGGGGGGGATTCGGG
GAACTTCAATACCCGGATCGGGGGAAGATCTCGCCCGCATATTACGGGTA
TATTATGTGGTTAGGGTGGGAGAAGAATTCTATCACATACTTATGCCACG
ACTCATGTTAACACACGCAACTGTGCAACAATCACAGAATGACGAGCTGG
GAAATCATTGACATTCTTTTCAAGACAGCAGGCGAGAACGGCATTTTGAT
TTTGCTCGATATGCACATGCTGGATCCAGCAAAGGGCGTGAGTCGATTGT
GGTACGACCCCGAGAAGTATTCAGAGGCCACTGTTATGTGGGGTTGGGGT
GAGTGGGGAGGGAGCAAGGGGGGTGGGATGGGGCAGGGGAAAACCGATTT
CCATTGTAAAACAAAACTGTTTATCAATATTCACAAACATGTATACATAC
AAGAACGTATCCTGAAGCGCTACGTAGGCCATTGGAATCTTTTTGGGTTG
GACGTCATGAACGAGTGTCACGACCATGCTTCTTGGGGCACGGGCAACCC
CATGACCGACTTTAATTCTTACGTTGAACGATTCATGCTGTTCATCAACG
AGAGAGTCCCAGAGTACCGCGGGCTCTTTTTTGTGGAAGGGGTGAGTATT
AAAGACAAAGGGGAGAAACGGATCCAAGAGGAACGACTCTACACGGTTCA
AGCGGCATTAAGTGTTTTTTTGGATTTTCCCACTCATCTTTCCCACCCAC
CCACCCACCCACCCACCCACCATCCAATCCGTCCTCTATTTAGGTCTTCC
TTAACGGAGATGGGCGCGATCCCGGGCCTTATCCGTACTGGTGGGGTGGG
AACCTGATGGGGGCTGACAAACACCCTATTGATACCAAGATTGCTGCCCT
GAACGATCGTGTGGTGTACGCGCCCCACATTTACGGACCCGATGTGTCGA
ACATGCTTTATTTCAACGATTTCCGCTTCCCCAACAACTTGAGGAATGTA
CGTGCTTGACGGCTATCACGACTGCTGCTGCTGAATAAAGAGTCACGATG
TGTGTGTGTGTATGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTCTTTT
AAAAGTTTGTTCTCGTCACTTCTAACACTTACCCTCTATCATTTTCACTT
TTCCTCTTCCAAATCATTCCACCCTAGGTATGGGACCTCCAATTCGGCTG
GCTTATCAAAAGCACGCGCAAAGCCCTGGTGGTGGGAGAATGGGGAGGCA
GCTGCAAAAACAAGGACGGCGTCGTGCAAGAGCACCTTGCTGAATGGATG
GTCGAAAATTGTTTTCAGTCCAACTTCTGGTGGGCACTTAATCCCGGATC
GTCTGACACCGACGGTAAGAAGGAAGGAGGACAGGAGGGATTCGGCCTGC
ACGATTTTTATGCAAGTGAAGTTCATGGCAACGTGTTCGATTGAAATATT
TCTCCCTCCCTGTCTCCCTCTCTCAATCCCTCCCCCTCCCTATTTCTCTG
CCAGGCCTCATGTCTCCAGACTGGTCCCATTTCGATCCCTTTAAAATGAA
CCTGTTGGGAAAGGTGCAGCCCGACCCCTCTACCTTCACCTTCGACAAAG
CCAGCAATCAAGTTTGTATCCGTCACGGCGCCCCACCCAATCCCCAATGC
GCCAGTAATATCGATGCTGTTGCGTCGCGGCAGCCTAGCCAGGTAGGGTA
TGATAACCCCTCACCAATGCGTGGTCGGCCGTGA

Coding sequence (CDS) from alignment at chr17:319369..322102+

>NO17G01000.1 ID=NO17G01000.1|Name=NO17G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr17:319369..322102+ (Nannochloropsis oceanica)
ATGTACCTGTCTTATAACATTCACCGGGCCAGCGGGTGGGTGCTTTTGGT
GGTGGCCACGACCACTTGCTGCCTATTCACGGTCAATGCGCAACTCGAGC
CCCAATACATCCCGGCCTCGACGGCTGATAGCGTGACATGCTACCCCGCC
GACTCCCTCGCTTGGCGTTCCGTGCCCGGAAAAATGGTCGTGCATGGGGC
ACCTTTCGTCAAGAAACCTACGGCACCCGTTCCCCCCGCGCCACCCATGC
GCGAACCCGGCAGGCCACTCCCCGTAGACGTGGGCGTAGGCCCTGCGGGA
GGCTTCGAGACTGCACCCAGGCCTCCTATGCGACTGCCACAGCAGCAGCA
ACAACAACCATTTATGAGGCCCCCTGCAGGGAATACGCGGCCAGGGCCCA
ATATGAACCCGGTGGTTTCCCAACAGCGGGCCATCCCGGCCGTGCGGTTC
TTACAGGAGGGACAGGAGCACCAGAAGGTGGCAGGCGCGGTGGTGGATGG
CGTGGGGATCGAAACACCAGATTGGATGGGACAGGGAGATGAGTTAACGG
AAGAAGACAAGGCTGCAATTGCTCGTGAGTCGATGTATGCCAACATTCAG
ATCAAGGGTTTGAACTGGACCATCGACGAAGTGATTGCCTTTTTGATTGA
CCATAAGATCAATGCGATCCGTTTGCCTTTCTCCCTGGAGTTCGCGCTCA
CGCCCATGGACGTGCAGGAGGCAAAGGCTGGGGGGGGATTCGGGGAACTT
CAATACCCGGATCGGGGGAAGATCTCGCCCGCATATTACGGAATGACGAG
CTGGGAAATCATTGACATTCTTTTCAAGACAGCAGGCGAGAACGGCATTT
TGATTTTGCTCGATATGCACATGCTGGATCCAGCAAAGGGCGTGAGTCGA
TTGTGGTACGACCCCGAGAAGTATTCAGAGGCCACTGTTATGTGGGGTTG
GGGCCATTGGAATCTTTTTGGGTTGGACGTCATGAACGAGTGTCACGACC
ATGCTTCTTGGGGCACGGGCAACCCCATGACCGACTTTAATTCTTACGTT
GAACGATTCATGCTGTTCATCAACGAGAGAGTCCCAGAGTACCGCGGGCT
CTTTTTTGTGGAAGGGGTCTTCCTTAACGGAGATGGGCGCGATCCCGGGC
CTTATCCGTACTGGTGGGGTGGGAACCTGATGGGGGCTGACAAACACCCT
ATTGATACCAAGATTGCTGCCCTGAACGATCGTGTGGTGTACGCGCCCCA
CATTTACGGACCCGATGTGTCGAACATGCTTTATTTCAACGATTTCCGCT
TCCCCAACAACTTGAGGAATGTATGGGACCTCCAATTCGGCTGGCTTATC
AAAAGCACGCGCAAAGCCCTGGTGGTGGGAGAATGGGGAGGCAGCTGCAA
AAACAAGGACGGCGTCGTGCAAGAGCACCTTGCTGAATGGATGGTCGAAA
ATTGTTTTCAGTCCAACTTCTGGTGGGCACTTAATCCCGGATCGTCTGAC
ACCGACGGCCTCATGTCTCCAGACTGGTCCCATTTCGATCCCTTTAAAAT
GAACCTGTTGGGAAAGGTGCAGCCCGACCCCTCTACCTTCACCTTCGACA
AAGCCAGCAATCAAGTTTGTATCCGTCACGGCGCCCCACCCAATCCCCAA
TGCGCCAGTAATATCGATGCTGTTGCGTCGCGGCAGCCTAGCCAGGTAGG
GTATGATAACCCCTCACCAATGCGTGGTCGGCCGTGA

Synonyms

Publications