NO17G00960.1, NO17G00960.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G00960.1
Unique Name	NO17G00960.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2271
Alignment location	chr17:307972..310673 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:307972..310673 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G00960.1 vs.
Match: EWM21136.1 (Rubisco LS methyltransferase, substrate-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 489.2 bits (1258), Expect = 2.100e-134
Identity = 288/583 (49.40%), Postives = 365/583 (62.61%), Query Frame = 0

Query:   82 NKSKKKLHDTKSESIEKKESDEQRRIARFLAWLKAHGARFDKIEWPSYRFG--VRGAVALSDIDTEEDIASVPEHLLLTPLVLLENPEIGHVFEENLAEYSDEDMLAILVMHERGKGEASFFFPYLDTLPQLPDSLMVWNDEALSWLQSEDLCMQVHMRRSQMAAHYTRLVEDGLKANWPHLFGANQVEKDEKDEQTLPPFYSSYPTSSFSDDNNGDTEEEENDDDDDPYSFKNFAFAWQSIQARAFGRRLPYSALVPFCDGFNHANVAIKYRLEAGGSNAGAGSSNKDTATSCIYVGGVLEHVEAKKHQQEQQLRQGKEGKGEGGAKSPQLPTRAFHLFPSGENRYKKGEEVCTSYGRRTNEELLLSYGFSLLDNEHEFIDLPMPGIPSPPSWFGASLARLGISSSSSSSSSSSSSSSSSSSGKKIETVDVFKASHALAAGATEIKLELLAYFRSLVACRYFKDTDGEEVGSTIDYLRPFPSVVYEAEALRALQAQVEEVLSAFPTSLEEDEVALKECTTGEEVGGEGR------------REGG--SVNANCRIAALTYRLTRKRILKHHLGMIQKEIRAL 649
            +K  K      + +++ +E +E+RRI RFL WL+AHGAR DKIEWPSY  G  +RGAVAL DI++ ED+ S+PE LLLTP V L++P+IG VFE+NL ++SDEDML IL+MHERGKGE SFF+PYL TLP+LPD+L+ WN+E LSWLQ E L ++V +R SQ+ AHYTRLVE+ LKA WP LFG                          + D+  D+E +      DPYS +NF FAW +IQARAFGRRLPYSAL+P CD FNHANVA+ YRLE       + + N++        GG          Q+E+ +R   EG+        + P R FHL PSG NRYKKGEEV TSYGRRTN ELLL YGF+LLDNEHE + L MPGIPSPPSWF ASL+ LG + S    + S +              DV + SH L AGATE+  EL+AYFR+L AC    + D   V   +DY++ FP   +E +A   L A +   L+AFPTS+EEDEV L       + G EG+            R+ G    NA+CR+AALTYRLTRKR++KHHL ++ K + AL
Sbjct:   61 DKEMKMTEHRVNSNMDNEEDEEKRRINRFLTWLRAHGARCDKIEWPSYATGSQIRGAVALDDINSNEDMVSIPEPLLLTPDVALKDPDIGKVFEDNLEDFSDEDMLLILLMHERGKGETSFFYPYLATLPRLPDTLLNWNEEGLSWLQDEGLSLEVFLRESQLTAHYTRLVEEKLKAGWPGLFGE-------------------------APDDASDSESK----GADPYSLENFRFAWLTIQARAFGRRLPYSALIPLCDSFNHANVAVTYRLE-----PASVALNRE--------GG---------RQREEDVR--LEGQILFPCPDSRSPPRVFHLSPSGSNRYKKGEEVFTSYGRRTNAELLLFYGFALLDNEHESVALSMPGIPSPPSWFQASLSALGTAGSVGGRARSMAE-------------DVLRPSHLLFAGATEVPSELVAYFRALTACCSMNEKD--VVEQKLDYMQHFPCSRHERDAFSTLGAHMSASLAAFPTSIEEDEVELLASLAASK-GSEGKRREVEPWENKGIRDAGVKGENASCRLAALTYRLTRKRVIKHHLELVDKRLAAL 574

The following BLAST results are available for this feature:

BLAST of NO17G00960.1 vs.

BLAST of NO17G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21136.1	2.100e-134	49.40	Rubisco LS methyltransferase, substrate-binding do...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G00960	NO17G00960	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G00960.1	NO17G00960.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G00960.1.cds1	NO17G00960.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00960.1.cds2	NO17G00960.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:307972..310673-
coding sequence from alignment at chr17:307972..310673-

mRNA sequence

>NO17G00960.1 ID=NO17G00960.1|Name=NO17G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp
GATAACCACCCAAACAGCAGGGAATTGCCAGTCGTCAATAAAGTGATTGG
TAAATCCATGCAACACACCGCCCCGGCTTTCCTCATCTGCTGCCACGACC
GTGTCTTCTTGGTCCTACTCCTCCTCCTGGCCCTCCACATATCGTGCGTG
TCGGGGTGGCTGCAGCTTTGGCCAGCGACAACGAAGCAGATTGGCTGCTG
GGGGCGGCGGCTTATGATGCAATCCAATATTGAAGTCATGGCCAATGCAG
ACGTGCACGATAGACCCCCAAAGAGCAGATATTCCGCCTCCACATTCACC
AACAAATCAAAGAAGAAGCTACATGATACCAAAAGTGAAAGTATCGAAAA
GAAGGAGAGTGACGAACAACGGCGGATTGCCCGCTTCCTGGCGTGGCTTA
AGGCACACGGCGCGCGTTTCGACAAGATCGAGTGGCCTTCCTACCGATTC
GGTGTCCGCGGCGCCGTTGCTTTGTCAGATATAGACACTGAAGAAGACAT
TGCTAGCGTCCCGGAACATCTTTTGCTTACTCCGCTTGTGCTGTTGGAGA
ATCCAGAGATTGGGCATGTGTTCGAAGAGAACCTCGCGGAATATTCCGAT
GAAGACATGCTGGCCATTTTAGTCATGCACGAACGTGGAAAAGGCGAAGC
CAGCTTCTTCTTTCCTTATCTGGATACTCTCCCGCAGCTGCCAGACAGTC
TTATGGTGTGGAATGACGAGGCCTTAAGCTGGCTACAGAGCGAAGATCTT
TGTATGCAGGTGCACATGCGGAGGAGTCAGATGGCAGCGCATTACACGAG
GTTGGTCGAAGATGGATTGAAGGCGAATTGGCCTCATCTCTTTGGAGCTA
ACCAAGTAGAAAAGGACGAGAAAGATGAACAGACGCTCCCTCCCTTTTAT
TCCTCCTATCCTACTTCCTCCTTTTCCGATGACAACAACGGGGACACGGA
GGAAGAGGAAAATGATGACGATGATGACCCGTACTCTTTCAAAAACTTTG
CCTTTGCTTGGCAAAGTATCCAAGCGCGGGCATTTGGTCGGCGCTTGCCG
TATTCTGCTTTGGTCCCTTTCTGTGATGGGTTTAATCACGCTAATGTCGC
GATCAAATATCGACTGGAGGCAGGGGGCAGCAATGCGGGGGCGGGTAGTA
GTAATAAGGATACCGCCACCAGTTGCATCTATGTTGGTGGTGTGCTGGAG
CACGTAGAGGCGAAGAAGCACCAACAAGAGCAGCAGCTGCGGCAAGGAAA
AGAAGGCAAAGGAGAGGGCGGGGCGAAGTCCCCTCAGCTTCCAACTCGTG
CCTTTCACCTCTTCCCCAGCGGCGAGAATCGCTACAAAAAGGGTGAAGAA
GTCTGCACTTCCTATGGGCGACGAACCAATGAAGAGCTTCTTCTTTCCTA
CGGCTTTTCCCTTCTTGACAATGAGCATGAGTTCATAGACCTTCCTATGC
CAGGCATCCCTTCCCCCCCGTCCTGGTTCGGTGCCTCGCTGGCCCGGCTT
GGGATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCGGGAAGAAGATAGAAACCGTCGATGTGTTTAAGGCCT
CGCACGCCTTGGCCGCGGGAGCAACTGAGATCAAATTGGAATTACTCGCC
TACTTTCGGTCGCTGGTGGCGTGCCGTTATTTCAAAGATACGGACGGTGA
GGAGGTGGGGAGCACAATTGATTACTTGCGGCCTTTTCCATCAGTAGTTT
ATGAAGCCGAGGCCCTGAGGGCGTTGCAAGCGCAGGTAGAAGAAGTGCTT
TCTGCTTTTCCCACCTCTTTGGAGGAGGACGAGGTGGCGCTGAAAGAGTG
TACGACAGGAGAAGAGGTAGGAGGAGAAGGAAGGAGGGAGGGAGGAAGTG
TGAATGCGAACTGTCGAATTGCAGCATTGACGTACCGATTGACTCGGAAA
CGGATTTTGAAGCACCATTTGGGGATGATCCAAAAGGAGATACGAGCCTT
GGTGGAAGATGAGGAGGACGACAGAAAGGGACTCGACAGAAGAAATAGCC
AGAGTGGTAACAGAAGAGAGATAATACGATTGACTGAAAGATTGGGATTG
AATGATTCATGATGGTGATCACCACACGAACATGCACCATATACATATAT
TCATATAGATACATACAAGTGACTCCGAGTGTGTTTGTGGAGCAATATCC
GCATCTCCTGCATTACGTGTGAACAAAACCATTCAGGTAAACAAGAAAAA
TTTATTCGTACAGGTGCTGAT

protein sequence of NO17G00960.1

>NO17G00960.1-protein ID=NO17G00960.1-protein|Name=NO17G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=685bp
MQHTAPAFLICCHDRVFLVLLLLLALHISCVSGWLQLWPATTKQIGCWGR
RLMMQSNIEVMANADVHDRPPKSRYSASTFTNKSKKKLHDTKSESIEKKE
SDEQRRIARFLAWLKAHGARFDKIEWPSYRFGVRGAVALSDIDTEEDIAS
VPEHLLLTPLVLLENPEIGHVFEENLAEYSDEDMLAILVMHERGKGEASF
FFPYLDTLPQLPDSLMVWNDEALSWLQSEDLCMQVHMRRSQMAAHYTRLV
EDGLKANWPHLFGANQVEKDEKDEQTLPPFYSSYPTSSFSDDNNGDTEEE
ENDDDDDPYSFKNFAFAWQSIQARAFGRRLPYSALVPFCDGFNHANVAIK
YRLEAGGSNAGAGSSNKDTATSCIYVGGVLEHVEAKKHQQEQQLRQGKEG
KGEGGAKSPQLPTRAFHLFPSGENRYKKGEEVCTSYGRRTNEELLLSYGF
SLLDNEHEFIDLPMPGIPSPPSWFGASLARLGISSSSSSSSSSSSSSSSS
SSGKKIETVDVFKASHALAAGATEIKLELLAYFRSLVACRYFKDTDGEEV
GSTIDYLRPFPSVVYEAEALRALQAQVEEVLSAFPTSLEEDEVALKECTT
GEEVGGEGRREGGSVNANCRIAALTYRLTRKRILKHHLGMIQKEIRALVE
DEEDDRKGLDRRNSQSGNRREIIRLTERLGLNDS*

mRNA from alignment at chr17:307972..310673-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G00960.1 ID=NO17G00960.1|Name=NO17G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2702bp|location=Sequence derived from alignment at chr17:307972..310673- (Nannochloropsis oceanica)
GATAACCACCCAAACAGCAGGGAATTGCCAGTCGTCAATAAAGTGATTGG
TAAATCCATGCAACACACCGCCCCGGCTTTCCTCATCTGCTGCCACGACC
GTGTCTTCTTGGTCCTACTCCTCCTCCTGGCCCTCCACATATCGTGCGTG
TCGGGGTGGCTGCAGCTTTGGCCAGCGACAACGAAGCAGGTACGTGACGC
CGCCTTGGCGTGATCGGCTCATTTTTCACTTAATTTTTATCTTAGCAGTG
CATCCTTGAGGAGGAGCAGGCCGAAGGAGGCCGACACTGTACCGTGCAGA
GCATCACACCCCTGTCGGGAGGCGCAACGATCTCATGCAGTTAAAACATC
TCGGGCGTGCCCGGCTCCGATACATGTACACCTGTCCTGAACTATAAAAT
ATTTGAGAAACAAATGATAGGCTTAAATGTTGAGTATAGCATAGGAAATC
AACGAGCGAAATATATTTGTCAGCATTCTGAGAAGCCAGCTGTGGCAACG
ACAGACTCCCCATCAACCATTGGTGGGCGTACCTTTTTTCTCGCGCCAGA
CCATATGTCCTTCTTCCACACTATTCACACAGATCATCGTGTCACCAATG
TATTTCCTAATCCTACTTAGATTGGCTGCTGGGGGCGGCGGCTTATGATG
CAATCCAATATTGAAGTCATGGCCAATGCAGACGTGCACGATAGACCCCC
AAAGAGCAGATATTCCGCCTCCACATTCACCAACAAATCAAAGAAGAAGC
TACATGATACCAAAAGTGAAAGTATCGAAAAGAAGGAGAGTGACGAACAA
CGGCGGATTGCCCGCTTCCTGGCGTGGCTTAAGGCACACGGCGCGCGTTT
CGACAAGATCGAGTGGCCTTCCTACCGATTCGGTGTCCGCGGCGCCGTTG
CTTTGTCAGATATAGACACTGAAGAAGACATTGCTAGCGTCCCGGAACAT
CTTTTGCTTACTCCGCTTGTGCTGTTGGAGAATCCAGAGATTGGGCATGT
GTTCGAAGAGAACCTCGCGGAATATTCCGATGAAGACATGCTGGCCATTT
TAGTCATGCACGAACGTGGAAAAGGCGAAGCCAGCTTCTTCTTTCCTTAT
CTGGATACTCTCCCGCAGCTGCCAGACAGTCTTATGGTGTGGAATGACGA
GGCCTTAAGCTGGCTACAGAGCGAAGATCTTTGTATGCAGGTGCACATGC
GGAGGAGTCAGATGGCAGCGCATTACACGAGGTTGGTCGAAGATGGATTG
AAGGCGAATTGGCCTCATCTCTTTGGAGCTAACCAAGTAGAAAAGGACGA
GAAAGATGAACAGACGCTCCCTCCCTTTTATTCCTCCTATCCTACTTCCT
CCTTTTCCGATGACAACAACGGGGACACGGAGGAAGAGGAAAATGATGAC
GATGATGACCCGTACTCTTTCAAAAACTTTGCCTTTGCTTGGCAAAGTAT
CCAAGCGCGGGCATTTGGTCGGCGCTTGCCGTATTCTGCTTTGGTCCCTT
TCTGTGATGGGTTTAATCACGCTAATGTCGCGATCAAATATCGACTGGAG
GCAGGGGGCAGCAATGCGGGGGCGGGTAGTAGTAATAAGGATACCGCCAC
CAGTTGCATCTATGTTGGTGGTGTGCTGGAGCACGTAGAGGCGAAGAAGC
ACCAACAAGAGCAGCAGCTGCGGCAAGGAAAAGAAGGCAAAGGAGAGGGC
GGGGCGAAGTCCCCTCAGCTTCCAACTCGTGCCTTTCACCTCTTCCCCAG
CGGCGAGAATCGCTACAAAAAGGGTGAAGAAGTCTGCACTTCCTATGGGC
GACGAACCAATGAAGAGCTTCTTCTTTCCTACGGCTTTTCCCTTCTTGAC
AATGAGCATGAGTTCATAGACCTTCCTATGCCAGGCATCCCTTCCCCCCC
GTCCTGGTTCGGTGCCTCGCTGGCCCGGCTTGGGATCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAAG
AAGATAGAAACCGTCGATGTGTTTAAGGCCTCGCACGCCTTGGCCGCGGG
AGCAACTGAGATCAAATTGGAATTACTCGCCTACTTTCGGTCGCTGGTGG
CGTGCCGTTATTTCAAAGATACGGACGGTGAGGAGGTGGGGAGCACAATT
GATTACTTGCGGCCTTTTCCATCAGTAGTTTATGAAGCCGAGGCCCTGAG
GGCGTTGCAAGCGCAGGTAGAAGAAGTGCTTTCTGCTTTTCCCACCTCTT
TGGAGGAGGACGAGGTGGCGCTGAAAGAGTGTACGACAGGAGAAGAGGTA
GGAGGAGAAGGAAGGAGGGAGGGAGGAAGTGTGAATGCGAACTGTCGAAT
TGCAGCATTGACGTACCGATTGACTCGGAAACGGATTTTGAAGCACCATT
TGGGGATGATCCAAAAGGAGATACGAGCCTTGGTGGAAGATGAGGAGGAC
GACAGAAAGGGACTCGACAGAAGAAATAGCCAGAGTGGTAACAGAAGAGA
GATAATACGATTGACTGAAAGATTGGGATTGAATGATTCATGATGGTGAT
CACCACACGAACATGCACCATATACATATATTCATATAGATACATACAAG
TGACTCCGAGTGTGTTTGTGGAGCAATATCCGCATCTCCTGCATTACGTG
TGAACAAAACCATTCAGGTAAACAAGAAAAATTTATTCGTACAGGTGCTG
AT

Coding sequence (CDS) from alignment at chr17:307972..310673-

>NO17G00960.1 ID=NO17G00960.1|Name=NO17G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=2055bp|location=Sequence derived from alignment at chr17:307972..310673- (Nannochloropsis oceanica)
ATGCAACACACCGCCCCGGCTTTCCTCATCTGCTGCCACGACCGTGTCTT
CTTGGTCCTACTCCTCCTCCTGGCCCTCCACATATCGTGCGTGTCGGGGT
GGCTGCAGCTTTGGCCAGCGACAACGAAGCAGATTGGCTGCTGGGGGCGG
CGGCTTATGATGCAATCCAATATTGAAGTCATGGCCAATGCAGACGTGCA
CGATAGACCCCCAAAGAGCAGATATTCCGCCTCCACATTCACCAACAAAT
CAAAGAAGAAGCTACATGATACCAAAAGTGAAAGTATCGAAAAGAAGGAG
AGTGACGAACAACGGCGGATTGCCCGCTTCCTGGCGTGGCTTAAGGCACA
CGGCGCGCGTTTCGACAAGATCGAGTGGCCTTCCTACCGATTCGGTGTCC
GCGGCGCCGTTGCTTTGTCAGATATAGACACTGAAGAAGACATTGCTAGC
GTCCCGGAACATCTTTTGCTTACTCCGCTTGTGCTGTTGGAGAATCCAGA
GATTGGGCATGTGTTCGAAGAGAACCTCGCGGAATATTCCGATGAAGACA
TGCTGGCCATTTTAGTCATGCACGAACGTGGAAAAGGCGAAGCCAGCTTC
TTCTTTCCTTATCTGGATACTCTCCCGCAGCTGCCAGACAGTCTTATGGT
GTGGAATGACGAGGCCTTAAGCTGGCTACAGAGCGAAGATCTTTGTATGC
AGGTGCACATGCGGAGGAGTCAGATGGCAGCGCATTACACGAGGTTGGTC
GAAGATGGATTGAAGGCGAATTGGCCTCATCTCTTTGGAGCTAACCAAGT
AGAAAAGGACGAGAAAGATGAACAGACGCTCCCTCCCTTTTATTCCTCCT
ATCCTACTTCCTCCTTTTCCGATGACAACAACGGGGACACGGAGGAAGAG
GAAAATGATGACGATGATGACCCGTACTCTTTCAAAAACTTTGCCTTTGC
TTGGCAAAGTATCCAAGCGCGGGCATTTGGTCGGCGCTTGCCGTATTCTG
CTTTGGTCCCTTTCTGTGATGGGTTTAATCACGCTAATGTCGCGATCAAA
TATCGACTGGAGGCAGGGGGCAGCAATGCGGGGGCGGGTAGTAGTAATAA
GGATACCGCCACCAGTTGCATCTATGTTGGTGGTGTGCTGGAGCACGTAG
AGGCGAAGAAGCACCAACAAGAGCAGCAGCTGCGGCAAGGAAAAGAAGGC
AAAGGAGAGGGCGGGGCGAAGTCCCCTCAGCTTCCAACTCGTGCCTTTCA
CCTCTTCCCCAGCGGCGAGAATCGCTACAAAAAGGGTGAAGAAGTCTGCA
CTTCCTATGGGCGACGAACCAATGAAGAGCTTCTTCTTTCCTACGGCTTT
TCCCTTCTTGACAATGAGCATGAGTTCATAGACCTTCCTATGCCAGGCAT
CCCTTCCCCCCCGTCCTGGTTCGGTGCCTCGCTGGCCCGGCTTGGGATCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGGAAGAAGATAGAAACCGTCGATGTGTTTAAGGCCTCGCACGC
CTTGGCCGCGGGAGCAACTGAGATCAAATTGGAATTACTCGCCTACTTTC
GGTCGCTGGTGGCGTGCCGTTATTTCAAAGATACGGACGGTGAGGAGGTG
GGGAGCACAATTGATTACTTGCGGCCTTTTCCATCAGTAGTTTATGAAGC
CGAGGCCCTGAGGGCGTTGCAAGCGCAGGTAGAAGAAGTGCTTTCTGCTT
TTCCCACCTCTTTGGAGGAGGACGAGGTGGCGCTGAAAGAGTGTACGACA
GGAGAAGAGGTAGGAGGAGAAGGAAGGAGGGAGGGAGGAAGTGTGAATGC
GAACTGTCGAATTGCAGCATTGACGTACCGATTGACTCGGAAACGGATTT
TGAAGCACCATTTGGGGATGATCCAAAAGGAGATACGAGCCTTGGTGGAA
GATGAGGAGGACGACAGAAAGGGACTCGACAGAAGAAATAGCCAGAGTGG
TAACAGAAGAGAGATAATACGATTGACTGAAAGATTGGGATTGAATGATT
CATGA

Synonyms

Publications