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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:299943..303229 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G00920.1 vs.
Match: EWM21124.1 (cellulase 2 [Nannochloropsis gaditana]) HSP 1 Score: 841.3 bits (2172), Expect = 1.900e-240 Identity = 410/620 (66.13%), Postives = 472/620 (76.13%), Query Frame = 0
Query: 14 VLLVVATTTCCLFTVNAQLEPQYIPASTADSVTCYPADSLAWRSVPGKMVVHGAPFVKKPTAPVPPAPPMREPGRPLPVDV--GVGPAGGFETA-----------------PRPPMRLPQQQQQQPFM---------------RPPAGNTRPGPNMNPVVSQQRAIPAVRFLQEGQE-----HQKVAGAVVDGVGIETPDWMG-QGDELTEEDKAAIARESMYANIQIKGLNWFGLDRINIFEGTNYKTIDEVIAFLIDHKINAIRLPFSLEFALTPMDVQEAKAGGGFGELQYPDRGKISPAYYGMTSWEIIDILFKTAGENGILILLDMHMLDPAKGVSRLWYDPEKYSEATVMWGWERILKRYVGHWNLFGLDVMNECHDHASWGTGNPMTDFNSYVERFMLFINERVPEYRGLFFVEGVFLNGDGRDPGPYPYWWGGNLMGADKHPIDTKIAALNDRVVYAPHIYGPDVSNMLYFNDFRFPNNLRNVWDLQFGWLIKSTRKALVVGEWGGSCKNKDGVVQEHLAEWMVENCFQSNFWWALNPGSSDTDGLMSPDWSHFDPFKMNLLGKVQPDPSTFTFDKASNQVCIRHGAPPNPQCASNIDAVASRQPSQVGYDN 594
+L + A C + ++ AQLEPQY+PA++++SVTCYPAD+LAWRS+PGK+V+HGAPFVK VPPA +P P+ D G G AGG P+PP+ P Q QP + P G RP PNM+P + PAVR LQ + QKVAGAVV GV IE + D+L EEDKAAIARESMYA+IQ+KGLNWFGLDRINIFEGTNYKTID+V+AF + H INA+RLPFSL FALTPMD +EA+AGGG GELQYPDRGKISP Y G+TSWEIID+LF+ A ENGILILLDMH LDP KGVSRLWYDP KYSEATV+WGWERIL RYV HWNLFGLD+MNECHDHASWG G+PMTDFN YVERF+LF++ERVP YRGLFFVEG+FLN GRD P+PYWWGGNL GADK+PID KIAALNDR+VYAPHIYGPDVSNM YFND+ FPNNL+NVWD QFGWLIKSTRKALVVGEWGGSC NKDG+VQEHLA+WM++NCFQSNFWWALNPGS+DTDGLMS DWSHFD KM LLGKVQP+PS FT++KA++ VC+RHGAPPNPQCA ++ + +Q DN
Sbjct: 12 ILCINAAIACLVTSIYAQLEPQYVPAASSESVTCYPADALAWRSIPGKIVLHGAPFVKTHHKKVPPA----QPSEPIVTDPSGGGGAAGGIRPGGGVTPEPQPKPINGVKPPQPPVTAPPAQVAQPIVPFPGAAGPGVPGPQGGVPGGAGRPLPNMDPFRPPELK-PAVRHLQTQEAAKAGGDQKVAGAVVGGVAIENGSGTAREEDDLDEEDKAAIARESMYASIQLKGLNWFGLDRINIFEGTNYKTIDQVMAFFVAHNINALRLPFSLAFALTPMDHEEAEAGGGQGELQYPDRGKISPEYIGLTSWEIIDLLFEKAKENGILILLDMHTLDPDKGVSRLWYDPAKYSEATVLWGWERILSRYVHHWNLFGLDIMNECHDHASWGKGDPMTDFNRYVERFILFVHERVPSYRGLFFVEGIFLNAMGRDQSPWPYWWGGNLFGADKYPIDVKIAALNDRIVYAPHIYGPDVSNMFYFNDWSFPNNLKNVWDNQFGWLIKSTRKALVVGEWGGSCNNKDGIVQEHLAQWMIDNCFQSNFWWALNPGSADTDGLMSQDWSHFDERKMALLGKVQPNPSKFTYEKATDMVCVRHGAPPNPQCADDLAHILKTPDTQQDQDN 626
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G00920.1 ID=NO17G00920.1|Name=NO17G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2377bp AGGATTATTTCTGTCCACCACAGAGATGTACCTGTCTTATAACATTCACC GGGCCAGCGGGTGGGTGCTTTTGGTGGTGGCCACGACCACTTGCTGCCTA TTCACGGTCAATGCGCAACTCGAGCCCCAATACATCCCGGCCTCGACGGC TGATAGCGTGACATGCTACCCCGCCGACTCCCTCGCTTGGCGTTCCGTGC CCGGAAAAATGGTCGTGCATGGGGCACCTTTCGTCAAGAAACCTACGGCA CCCGTTCCCCCCGCGCCACCCATGCGCGAACCCGGCAGGCCACTCCCCGT AGACGTGGGCGTAGGCCCTGCGGGAGGCTTCGAGACTGCACCCAGGCCTC CTATGCGACTGCCACAGCAGCAGCAACAACAACCATTTATGAGGCCCCCT GCAGGGAATACGCGGCCAGGGCCCAATATGAACCCGGTGGTTTCCCAACA GCGGGCCATCCCGGCCGTGCGGTTCTTACAGGAGGGACAGGAGCACCAGA AGGTGGCAGGCGCGGTGGTGGATGGCGTGGGGATCGAAACACCAGATTGG ATGGGACAGGGAGATGAGTTAACGGAAGAAGACAAGGCTGCAATTGCTCG TGAGTCGATGTATGCCAACATTCAGATCAAGGGTTTGAACTGGTTTGGCT TGGACCGAATTAACATCTTCGAGGGGACTAACTACAAGACCATCGACGAA GTGATTGCCTTTTTGATTGACCATAAGATCAATGCGATCCGTTTGCCTTT CTCCCTGGAGTTCGCGCTCACGCCCATGGACGTGCAGGAGGCAAAGGCTG GGGGGGGATTCGGGGAACTTCAATACCCGGATCGGGGGAAGATCTCGCCC GCATATTACGGAATGACGAGCTGGGAAATCATTGACATTCTTTTCAAGAC AGCAGGCGAGAACGGCATTTTGATTTTGCTCGATATGCACATGCTGGATC CAGCAAAGGGCGTGAGTCGATTGTGGTACGACCCCGAGAAGTATTCAGAG GCCACTGTTATGTGGGGTTGGGAACGTATCCTGAAGCGCTACGTAGGCCA TTGGAATCTTTTTGGGTTGGACGTCATGAACGAGTGTCACGACCATGCTT CTTGGGGCACGGGCAACCCCATGACCGACTTTAATTCTTACGTTGAACGA TTCATGCTGTTCATCAACGAGAGAGTCCCAGAGTACCGCGGGCTCTTTTT TGTGGAAGGGGTCTTCCTTAACGGAGATGGGCGCGATCCCGGGCCTTATC CGTACTGGTGGGGTGGGAACCTGATGGGGGCTGACAAACACCCTATTGAT ACCAAGATTGCTGCCCTGAACGATCGTGTGGTGTACGCGCCCCACATTTA CGGACCCGATGTGTCGAACATGCTTTATTTCAACGATTTCCGCTTCCCCA ACAACTTGAGGAATGTATGGGACCTCCAATTCGGCTGGCTTATCAAAAGC ACGCGCAAAGCCCTGGTGGTGGGAGAATGGGGAGGCAGCTGCAAAAACAA GGACGGCGTCGTGCAAGAGCACCTTGCTGAATGGATGGTCGAAAATTGTT TTCAGTCCAACTTCTGGTGGGCACTTAATCCCGGATCGTCTGACACCGAC GGCCTCATGTCTCCAGACTGGTCCCATTTCGATCCCTTTAAAATGAACCT GTTGGGAAAGGTGCAGCCCGACCCCTCTACCTTCACCTTCGACAAAGCCA GCAATCAAGTTTGTATCCGTCACGGCGCCCCACCCAATCCCCAATGCGCC AGTAATATCGATGCTGTTGCGTCGCGGCAGCCTAGCCAGGTAGGGTATGA TAACCCCCTCACCAATGCGTGGTCGGCCGTGAATCGATTGAGGGGATCGA CATAGATGGAAGAAGGGAAAGAGGGAGGGAAAGAGGGACGGAAAATGTGC AGATACCAACTTAGGGTGTAGTTAATTTTGGAGGGGATAATGCCGAGCAA GTAGAAGAGGGCGAGAGTTGTTGAATCCGACTGTGTACGCTTGCTGTATT ATTTATGTAGTGAATAGAAGGACAAAAGCGAGGATGACGGAAGAGAGCGG TGATGACTATATGTATAACTAGAGTATAAATGGGATAGTGTGAAATTAGA ACAGAAAGACATCGAGCAAGGATTTATGTGAAGCCTCGACACTGCGAAAG GCGGGAAAAGGGAGAGAAGAAGTGAAGGTGGAGAGGTGGATGGGAGTGAT GCGGCGGTATGAACTACCGAGAAAGATGTCAACCTAATTGTATTTGTGCT GTTTTGAGAAACCAGGCGGGGAGCACCCGCGGCTTGCCAGGAGGGAGCAA GACCAGGCAAAGAAATCCATGTATCTTTTTGAAAAAAACAGAAAAACAAG AAAAAAGATAAAAGGGGTCAAGGGATA back to topprotein sequence of NO17G00920.1 >NO17G00920.1-protein ID=NO17G00920.1-protein|Name=NO17G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp MYLSYNIHRASGWVLLVVATTTCCLFTVNAQLEPQYIPASTADSVTCYPA DSLAWRSVPGKMVVHGAPFVKKPTAPVPPAPPMREPGRPLPVDVGVGPAG GFETAPRPPMRLPQQQQQQPFMRPPAGNTRPGPNMNPVVSQQRAIPAVRF LQEGQEHQKVAGAVVDGVGIETPDWMGQGDELTEEDKAAIARESMYANIQ IKGLNWFGLDRINIFEGTNYKTIDEVIAFLIDHKINAIRLPFSLEFALTP MDVQEAKAGGGFGELQYPDRGKISPAYYGMTSWEIIDILFKTAGENGILI LLDMHMLDPAKGVSRLWYDPEKYSEATVMWGWERILKRYVGHWNLFGLDV MNECHDHASWGTGNPMTDFNSYVERFMLFINERVPEYRGLFFVEGVFLNG DGRDPGPYPYWWGGNLMGADKHPIDTKIAALNDRVVYAPHIYGPDVSNML YFNDFRFPNNLRNVWDLQFGWLIKSTRKALVVGEWGGSCKNKDGVVQEHL AEWMVENCFQSNFWWALNPGSSDTDGLMSPDWSHFDPFKMNLLGKVQPDP STFTFDKASNQVCIRHGAPPNPQCASNIDAVASRQPSQVGYDNPLTNAWS AVNRLRGST* back to topmRNA from alignment at chr17:299943..303229+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G00920.1 ID=NO17G00920.1|Name=NO17G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3287bp|location=Sequence derived from alignment at chr17:299943..303229+ (Nannochloropsis oceanica) AGGATTATTTCTGTCCACCACAGAGATGTACCTGTCTTATAACATTCACC
GGGCCAGCGGGTGGGTGCTTTTGGTGGTGGCCACGACCACTTGCTGCCTA
TTCACGGTCAATGCGCAACTCGAGCCCCAATACATCCCGGCCTCGACGGC
TGATAGCGTGACATGCTACCCCGCCGACTCCCTCGCTTGGCGTTCCGTGC
CCGGAAAAATGGTCGTGCATGGGGCACCTTTCGTCAAGAAACCTACGGCA
CCCGTTCCCCCCGCGCCACCCATGCGCGAACCCGGCAGGCCACTCCCCGT
AGACGTGGGCGTAGGCCCTGCGGGAGGCTTCGAGACTGCACCCAGGCCTC
CTATGCGACTGCCACAGCAGCAGCAACAACAACCATTTATGAGGCCCCCT
GCAGGGAATACGCGGCCAGGGCCCAATATGAACCCGGTGGTTTCCCAACA
GCGGGCCATCCCGGCCGTGCGGTTCTTACAGGAGGGACAGGAGCACCAGA
AGGTGGCAGGCGCGGTGGTGGATGGCGTGGGGATCGAAACACCAGATTGG
ATGGGACAGGGAGATGAGTTAACGGAAGAAGACAAGGCTGCAATTGCTCG
TGAGTCGATGTATGCCAACATTCAGATCAAGGGTTTGAACTGGGTACGTC
TGATGAGAAAGAGGAAAGGAGGGGAGGTGGGGCTTACCCTCTGGGGTATG
AGCAAAGCTCAAACATCAACATCATTAAAATATTCACTATTTAATCGCAT
CCATGCACACAGTTTGGCTTGGACCGAATTAACATCTTCGAGGGGACTAA
CTACAAGGTATACGGAAGGGAGGGAAAGGCGGAACATGGGGCTGATTGGG
CAGTCCCTCTATGATCTACCGTCCCTCTCACATTCTCTTTGGGAGCCGTG
CCTCCCTTCTTTTCTAATACACAGACCATCGACGAAGTGATTGCCTTTTT
GATTGACCATAAGATCAATGCGATCCGTTTGCCTTTCTCCCTGGAGTTCG
CGCTCACGCCCATGGACGTGCAGGAGGCAAAGGCTGGGGGGGGATTCGGG
GAACTTCAATACCCGGATCGGGGGAAGATCTCGCCCGCATATTACGGGTA
TATTATGTGGTTAGGGTGGGAGAAGAATTCTATCACATACTTATGCCACG
ACTCATGTTAACACACGCAACTGTGCAACAATCACAGAATGACGAGCTGG
GAAATCATTGACATTCTTTTCAAGACAGCAGGCGAGAACGGCATTTTGAT
TTTGCTCGATATGCACATGCTGGATCCAGCAAAGGGCGTGAGTCGATTGT
GGTACGACCCCGAGAAGTATTCAGAGGCCACTGTTATGTGGGGTTGGGGT
GAGTGGGGAGGGAGCAAGGGGGGGTGGGATGGGGGCAGGGGAAAACCGAT
TTCCATTGTAAAACAAAACTGTTTATCAATATTCACAAACATGTATACAT
ACAAGAACGTATCCTGAAGCGCTACGTAGGCCATTGGAATCTTTTTGGGT
TGGACGTCATGAACGAGTGTCACGACCATGCTTCTTGGGGCACGGGCAAC
CCCATGACCGACTTTAATTCTTACGTTGAACGATTCATGCTGTTCATCAA
CGAGAGAGTCCCAGAGTACCGCGGGCTCTTTTTTGTGGAAGGGGTGAGTA
TTAAAGACAAAGGGGAGAAACGGATCCAAGAGGAACGACTCTACACGGTT
CAAGCGGCATTAAGTGTTTTTTTGGATTTTCCCACTCATCTTTCCCACCC
ACCCACCCACCCACCCACCCACCATCCAATCCGTCCTCTATTTAGGTCTT
CCTTAACGGAGATGGGCGCGATCCCGGGCCTTATCCGTACTGGTGGGGTG
GGAACCTGATGGGGGCTGACAAACACCCTATTGATACCAAGATTGCTGCC
CTGAACGATCGTGTGGTGTACGCGCCCCACATTTACGGACCCGATGTGTC
GAACATGCTTTATTTCAACGATTTCCGCTTCCCCAACAACTTGAGGAATG
TACGTGCTTGACGGCTATCACGACTGCTGCTGCTGAATAAAGAGTCACGA
TGTGTGTGTGTGTGTATGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTG
TCTTTTAAAAGTTTGTTCTCGTCACTTCTAACACTTACCCTCTATCATTT
TCACTTTTCCTCTTCCAAATCATTCCACCCTAGGTATGGGACCTCCAATT
CGGCTGGCTTATCAAAAGCACGCGCAAAGCCCTGGTGGTGGGAGAATGGG
GAGGCAGCTGCAAAAACAAGGACGGCGTCGTGCAAGAGCACCTTGCTGAA
TGGATGGTCGAAAATTGTTTTCAGTCCAACTTCTGGTGGGCACTTAATCC
CGGATCGTCTGACACCGACGGTAAGAAGGAAGGAGGACAGGAGGGGATTC
GGCCTGCACGATTTTTATGCAAGTGAAGTTCATGGCAACGTGTTCGATTG
AAATATTTCTCCCTCCCTGTCTCCCTCTCTCAATCCCTCCCCCTCCCTAT
TTCTCTGCCAGGCCTCATGTCTCCAGACTGGTCCCATTTCGATCCCTTTA
AAATGAACCTGTTGGGAAAGGTGCAGCCCGACCCCTCTACCTTCACCTTC
GACAAAGCCAGCAATCAAGTTTGTATCCGTCACGGCGCCCCACCCAATCC
CCAATGCGCCAGTAATATCGATGCTGTTGCGTCGCGGCAGCCTAGCCAGG
TAGGGTATGATAACCCCCTCACCAATGCGTGGTCGGCCGTGAATCGATTG
AGGGGATCGACATAGATGGAAGAAGGGAAAGAGGGAGGGAAAGAGGGACG
GAAAATGTGCAGATACCAACTTAGGGTGTAGTTAATTTTGGAGGGGATAA
TGCCGAGCAAGTAGAAGAGGGCGAGAGTTGTTGAATCCGACTGTGTACGC
TTGCTGTATTATTTATGTAGTGAATAGAAGGACAAAAGCGAGGATGACGG
AAGAGAGCGGTGATGACTATATGTATAACTAGAGTATAAATGGGATAGTG
TGAAATTAGAACAGAAAGACATCGAGCAAGGATTTATGTGAAGCCTCGAC
ACTGCGAAAGGCGGGAAAAGGGAGAGAAGAAGTGAAGGTGGAGAGGTGGA
TGGGAGTGATGCGGCGGTATGAACTACCGAGAAAGATGTCAACCTAATTG
TATTTGTGCTGTTTTGAGAAACCAGGCGGGGAGCACCCGCGGCTTGCCAG
GAGGGAGCAAGACCAGGCAAAGAAATCCATGTATCTTTTTGAAAAAAACA
GAAAAACAAGAAAAAAGATAAAAGGGGTCAAGGGATA back to topCoding sequence (CDS) from alignment at chr17:299943..303229+ >NO17G00920.1 ID=NO17G00920.1|Name=NO17G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at chr17:299943..303229+ (Nannochloropsis oceanica) ATGTACCTGTCTTATAACATTCACCGGGCCAGCGGGTGGGTGCTTTTGGT GGTGGCCACGACCACTTGCTGCCTATTCACGGTCAATGCGCAACTCGAGC CCCAATACATCCCGGCCTCGACGGCTGATAGCGTGACATGCTACCCCGCC GACTCCCTCGCTTGGCGTTCCGTGCCCGGAAAAATGGTCGTGCATGGGGC ACCTTTCGTCAAGAAACCTACGGCACCCGTTCCCCCCGCGCCACCCATGC GCGAACCCGGCAGGCCACTCCCCGTAGACGTGGGCGTAGGCCCTGCGGGA GGCTTCGAGACTGCACCCAGGCCTCCTATGCGACTGCCACAGCAGCAGCA ACAACAACCATTTATGAGGCCCCCTGCAGGGAATACGCGGCCAGGGCCCA ATATGAACCCGGTGGTTTCCCAACAGCGGGCCATCCCGGCCGTGCGGTTC TTACAGGAGGGACAGGAGCACCAGAAGGTGGCAGGCGCGGTGGTGGATGG CGTGGGGATCGAAACACCAGATTGGATGGGACAGGGAGATGAGTTAACGG AAGAAGACAAGGCTGCAATTGCTCGTGAGTCGATGTATGCCAACATTCAG ATCAAGGGTTTGAACTGGTTTGGCTTGGACCGAATTAACATCTTCGAGGG GACTAACTACAAGACCATCGACGAAGTGATTGCCTTTTTGATTGACCATA AGATCAATGCGATCCGTTTGCCTTTCTCCCTGGAGTTCGCGCTCACGCCC ATGGACGTGCAGGAGGCAAAGGCTGGGGGGGGATTCGGGGAACTTCAATA CCCGGATCGGGGGAAGATCTCGCCCGCATATTACGGAATGACGAGCTGGG AAATCATTGACATTCTTTTCAAGACAGCAGGCGAGAACGGCATTTTGATT TTGCTCGATATGCACATGCTGGATCCAGCAAAGGGCGTGAGTCGATTGTG GTACGACCCCGAGAAGTATTCAGAGGCCACTGTTATGTGGGGTTGGGAAC GTATCCTGAAGCGCTACGTAGGCCATTGGAATCTTTTTGGGTTGGACGTC ATGAACGAGTGTCACGACCATGCTTCTTGGGGCACGGGCAACCCCATGAC CGACTTTAATTCTTACGTTGAACGATTCATGCTGTTCATCAACGAGAGAG TCCCAGAGTACCGCGGGCTCTTTTTTGTGGAAGGGGTCTTCCTTAACGGA GATGGGCGCGATCCCGGGCCTTATCCGTACTGGTGGGGTGGGAACCTGAT GGGGGCTGACAAACACCCTATTGATACCAAGATTGCTGCCCTGAACGATC GTGTGGTGTACGCGCCCCACATTTACGGACCCGATGTGTCGAACATGCTT TATTTCAACGATTTCCGCTTCCCCAACAACTTGAGGAATGTATGGGACCT CCAATTCGGCTGGCTTATCAAAAGCACGCGCAAAGCCCTGGTGGTGGGAG AATGGGGAGGCAGCTGCAAAAACAAGGACGGCGTCGTGCAAGAGCACCTT GCTGAATGGATGGTCGAAAATTGTTTTCAGTCCAACTTCTGGTGGGCACT TAATCCCGGATCGTCTGACACCGACGGCCTCATGTCTCCAGACTGGTCCC ATTTCGATCCCTTTAAAATGAACCTGTTGGGAAAGGTGCAGCCCGACCCC TCTACCTTCACCTTCGACAAAGCCAGCAATCAAGTTTGTATCCGTCACGG CGCCCCACCCAATCCCCAATGCGCCAGTAATATCGATGCTGTTGCGTCGC GGCAGCCTAGCCAGGTAGGGTATGATAACCCCCTCACCAATGCGTGGTCG GCCGTGAATCGATTGAGGGGATCGACATAG back to top
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