NO17G00790.1, NO17G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00790.1
Unique NameNO17G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr17:266761..268408 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:266761..268408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G00790.1 vs.
Match: XP_004352512.1 (4alpha-methyl-sterol C4-methyl-oxidase [Acanthamoeba castellanii str. Neff]; ELR23035.1 4alpha-methyl-sterol C4-methyl-oxidase [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 173.3 bits (438), Expect = 1.500e-39
Identity = 92/241 (38.17%), Postives = 137/241 (56.85%), Query Frame = 0 
Query:    7 LWLSLIQGLGLSERLTFLLGVYLVSELWYLFVAGFYYLCWAQDWFLRYRIQKRAT---------------MPDNALIKKCLEEVCVRSALGRLPFLFILFDAFKYMGMEV-FAPLPPWPTVLKHWVLALAINDTLFYWTHRLMHHRLLYKHFHKKHHEFRVNISVNSEYAGLVEVAMCDVLPTLAGCLLLGSHLLVMLGWTSFRVWETCAAHSGYAFPWCPFTQLPFFNGPQMHDYHHSHN 232
            +W S++ GLGL ER  F LG ++V E  ++ +    +LC  + W  R++IQ   +                P   L+++C+  +CV   + ++P L++++ AFKY GM    A LP    + +H  + + INDT FYW HRLMH +  Y+  H +HH F   I + SE+A  VE  + + LPT+ G +L+GSHLL    W   R+ ET  AHSGY+ P  PF+ +PF NG  +HD+HHSHN
Sbjct:    4 IWGSIL-GLGLPERWLFALGTFVVHEAAFVPLNAILFLCHHRGWLNRFKIQVGGSPSSTSKASSHSPGHPFPKARLVRECIFSLCVNHLVLQIPTLYLVYPAFKYFGMRSDIASLPDAWEMARHIAIFILINDTGFYWMHRLMHTKWFYRSIHARHHRFTAPIGIASEFAHPVEQVLANQLPTILGAMLMGSHLLTFWVWLFLRIVETIEAHSGYSLPLSPFSLVPFMNGADVHDFHHSHN 243
The following BLAST results are available for this feature:
BLAST of NO17G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004352512.11.500e-3938.174alpha-methyl-sterol C4-methyl-oxidase [Acanthamoe... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00790NO17G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00790.1NO17G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00790.1.cds1NO17G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00790.1.cds2NO17G00790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00790.1.cds3NO17G00790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00790.1.cds4NO17G00790.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00790.1 ID=NO17G00790.1|Name=NO17G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGGACGCCATAAGCCGGCTGTGGCTCTCCCTAATCCAAGGACTGGGTCT
AAGTGAACGCTTGACATTCTTGTTGGGCGTGTACCTCGTAAGCGAGCTTT
GGTACCTGTTCGTCGCGGGCTTTTACTACTTGTGCTGGGCACAAGACTGG
TTTCTCCGCTACCGCATTCAAAAACGAGCCACCATGCCTGATAACGCTCT
AATCAAGAAGTGTCTGGAAGAGGTGTGCGTCCGATCTGCCCTCGGTCGCC
TACCTTTTCTATTCATCTTGTTTGATGCCTTCAAGTACATGGGAATGGAG
GTCTTTGCGCCGTTGCCGCCGTGGCCAACTGTCCTGAAGCACTGGGTCTT
GGCCTTAGCCATAAATGACACACTATTCTACTGGACTCATAGACTGATGC
ATCATCGATTGCTGTACAAACACTTTCACAAGAAGCATCACGAGTTCAGG
GTCAACATCTCGGTCAACTCTGAGTACGCTGGACTGGTGGAAGTGGCGAT
GTGTGACGTCCTCCCCACCCTCGCGGGCTGCCTCCTCCTTGGTTCCCACC
TCCTTGTCATGCTAGGTTGGACGAGCTTTCGCGTCTGGGAGACATGTGCA
GCACACTCGGGTTATGCTTTTCCGTGGTGTCCTTTCACGCAATTACCTTT
TTTCAATGGTCCGCAGATGCATGATTACCACCACTCGCACAATGTTGGAG
CCTACGGTGCCGTGACGCGCTTCTGGGACGCCTGGATAGGTACTGACGGT
CACTATCATGAGCACGCACGCCGGCATCCAGACCCTTGCATCCCTTGCAA
GGGACGCTTGGTGGACGTCCCTCTCAGCCACGCCGCTCTTCCCTCCCTCC
ACTCGATTCGGTCCTCGGCGGCGGCGGTGTCGACGTGGTGGGAGGGAGGA
AAGGAGGGTAAGCCAAGGTTGGTGAGTTGTGATGCCGGCATGTTCAAGAG
CAATAGCAGTAGCAGTATGTATAGTAGTGGCAGCAGTACCAGCACCGATG
GCGATGGTTTTGAGAGCAGCAGTGAGGGTAACAGTGATTCTAATGAAAAC
GACAGTCGCAGAAGCAGTGGCAAGGGGGAGTTGAAAGGTGATTTGCCCAG
CGCTATCACACCACACCATTCGTGTGTAGAAGAAAATAGCGGCATCAACG
ATATAGATAGCAGCAACAACAAATGA
back to top

protein sequence of NO17G00790.1

>NO17G00790.1-protein ID=NO17G00790.1-protein|Name=NO17G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MDAISRLWLSLIQGLGLSERLTFLLGVYLVSELWYLFVAGFYYLCWAQDW
FLRYRIQKRATMPDNALIKKCLEEVCVRSALGRLPFLFILFDAFKYMGME
VFAPLPPWPTVLKHWVLALAINDTLFYWTHRLMHHRLLYKHFHKKHHEFR
VNISVNSEYAGLVEVAMCDVLPTLAGCLLLGSHLLVMLGWTSFRVWETCA
AHSGYAFPWCPFTQLPFFNGPQMHDYHHSHNVGAYGAVTRFWDAWIGTDG
HYHEHARRHPDPCIPCKGRLVDVPLSHAALPSLHSIRSSAAAVSTWWEGG
KEGKPRLVSCDAGMFKSNSSSSMYSSGSSTSTDGDGFESSSEGNSDSNEN
DSRRSSGKGELKGDLPSAITPHHSCVEENSGINDIDSSNNK*
back to top

mRNA from alignment at chr17:266761..268408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00790.1 ID=NO17G00790.1|Name=NO17G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp|location=Sequence derived from alignment at chr17:266761..268408- (Nannochloropsis oceanica)
ATGGACGCCATAAGCCGGCTGTGGCTCTCCCTAATCCAAGGACTGGGTCT
AAGTGAACGCTTGACATTCTTGGTGTGTGTGTGTGTGTACCTGTGTATCT
GTGTGGGTGTGTGAATGTGTGAGTGTATGGGAGTTCATCTCGTGGCGGGA
ATAAGTAAAGGGAGGACCTCTGACGGGAAAACGGACATAAGGTCAACCAT
ATTAATTGATTTGTGCTTTCTTCTCTTTCATCCCCACCCTTGCAGTTGGG
CGTGTACCTCGTAAGCGAGCTTTGGTACCTGTTCGTCGCGGGCTTTTACT
ACTTGTGCTGGGCACAAGACTGGTTTCTCCGCTACCGCATTCAAAAACGA
GCCACCATGCCTGATAACGCTCTAATCAAGAAGTGTCTGGAAGAGGTGTG
CGTCCGATCTGCCCTCGGTCGCCTACCTTTTCTATTCATCTTGTTTGATG
CCTTCAAGTACATGGGAATGGAGGTCTTTGCGCCGTTGCCGCCGTGGCCA
ACTGTCCTGAAGCACTGGGTCTTGGCCTTAGCCATAAATGACACACTATT
CTACTGGACTCATAGACTGATGCATCATCGATTGCTGTACAAACACTTTC
ACAAGAAGCATCACGAGTTCAGGGTAACGAAGGAGGGAGGGATTGAGGGA
ATCGTGTAGTCTCCTGCGTGGTGGCCCTGCTGATCCCCCTCGTATCTCTT
CGTATCCACCAAACGTTTAGAACTCACTATTTTATTGTGGTTTCCCACCT
TTTTTCCCAGGTCAACATCTCGGTCAACTCTGAGTACGCTGGACTGGTGG
AAGTGGCGATGTGTGACGTCCTCCCCACCCTCGCGGGCTGCCTCCTCCTT
GGTTCCCACCTCCTTGTCATGCTAGGTTGGACGAGCTTTCGCGTCTGGGA
GACATGTGCAGCACACTCGGGTTATGCTTTTCCGTGGTGTCCTTTCACGC
AATTACCTTTTTTCAATGGTCCGCAGATGTGAGTAGAGTGAGGGAGAAGG
GAAGAGAAGGAGAGGTGGGAAGGAGGTGAAGGTGGAGAGAGTTTTCTTTG
TGTGAGATCATTTCGATCTATGCTTGGTTCGAATAGTAGCCGACCCATAT
CTTCCATTTCTTCGCCTTTTCTCACATGTCTTCCGTCCAGGCATGATTAC
CACCACTCGCACAATGTTGGAGCCTACGGTGCCGTGACGCGCTTCTGGGA
CGCCTGGATAGGTACTGACGGTCACTATCATGAGCACGCACGCCGGCATC
CAGACCCTTGCATCCCTTGCAAGGGACGCTTGGTGGACGTCCCTCTCAGC
CACGCCGCTCTTCCCTCCCTCCACTCGATTCGGTCCTCGGCGGCGGCGGT
GTCGACGTGGTGGGAGGGAGGAAAGGAGGGTAAGCCAAGGTTGGTGAGTT
GTGATGCCGGCATGTTCAAGAGCAATAGCAGTAGCAGTATGTATAGTAGT
GGCAGCAGTACCAGCACCGATGGCGATGGTTTTGAGAGCAGCAGTGAGGG
TAACAGTGATTCTAATGAAAACGACAGTCGCAGAAGCAGTGGCAAGGGGG
AGTTGAAAGGTGATTTGCCCAGCGCTATCACACCACACCATTCGTGTGTA
GAAGAAAATAGCGGCATCAACGATATAGATAGCAGCAACAACAAATGA
back to top

Coding sequence (CDS) from alignment at chr17:266761..268408-

>NO17G00790.1 ID=NO17G00790.1|Name=NO17G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr17:266761..268408- (Nannochloropsis oceanica)
ATGGACGCCATAAGCCGGCTGTGGCTCTCCCTAATCCAAGGACTGGGTCT
AAGTGAACGCTTGACATTCTTGTTGGGCGTGTACCTCGTAAGCGAGCTTT
GGTACCTGTTCGTCGCGGGCTTTTACTACTTGTGCTGGGCACAAGACTGG
TTTCTCCGCTACCGCATTCAAAAACGAGCCACCATGCCTGATAACGCTCT
AATCAAGAAGTGTCTGGAAGAGGTGTGCGTCCGATCTGCCCTCGGTCGCC
TACCTTTTCTATTCATCTTGTTTGATGCCTTCAAGTACATGGGAATGGAG
GTCTTTGCGCCGTTGCCGCCGTGGCCAACTGTCCTGAAGCACTGGGTCTT
GGCCTTAGCCATAAATGACACACTATTCTACTGGACTCATAGACTGATGC
ATCATCGATTGCTGTACAAACACTTTCACAAGAAGCATCACGAGTTCAGG
GTCAACATCTCGGTCAACTCTGAGTACGCTGGACTGGTGGAAGTGGCGAT
GTGTGACGTCCTCCCCACCCTCGCGGGCTGCCTCCTCCTTGGTTCCCACC
TCCTTGTCATGCTAGGTTGGACGAGCTTTCGCGTCTGGGAGACATGTGCA
GCACACTCGGGTTATGCTTTTCCGTGGTGTCCTTTCACGCAATTACCTTT
TTTCAATGGTCCGCAGATGCATGATTACCACCACTCGCACAATGTTGGAG
CCTACGGTGCCGTGACGCGCTTCTGGGACGCCTGGATAGGTACTGACGGT
CACTATCATGAGCACGCACGCCGGCATCCAGACCCTTGCATCCCTTGCAA
GGGACGCTTGGTGGACGTCCCTCTCAGCCACGCCGCTCTTCCCTCCCTCC
ACTCGATTCGGTCCTCGGCGGCGGCGGTGTCGACGTGGTGGGAGGGAGGA
AAGGAGGGTAAGCCAAGGTTGGTGAGTTGTGATGCCGGCATGTTCAAGAG
CAATAGCAGTAGCAGTATGTATAGTAGTGGCAGCAGTACCAGCACCGATG
GCGATGGTTTTGAGAGCAGCAGTGAGGGTAACAGTGATTCTAATGAAAAC
GACAGTCGCAGAAGCAGTGGCAAGGGGGAGTTGAAAGGTGATTTGCCCAG
CGCTATCACACCACACCATTCGTGTGTAGAAGAAAATAGCGGCATCAACG
ATATAGATAGCAGCAACAACAAATGA
back to top
Synonyms
Publications