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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:80485..84262 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G00230.2 vs.
Match: XP_023643092.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Capsella rubella]) HSP 1 Score: 74.7 bits (182), Expect = 1.000e-9 Identity = 66/218 (30.28%), Postives = 103/218 (47.25%), Query Frame = 0
Query: 1 MREAVERLGGVYATDLEMDFTSFLIARRAEGEKYQAARKW-NIRVVSRDWLQACERRKVCDSGEAFPVLPTSHSPPPLHKEGGREGRGKGGLARSHSIG-----------------PPIAQELPLLSHLVRPEALVHLAGGDRYEGGREGGREGTWEDDVEAALPSLPSSMALDGCVVFLAGKDRIATKLKRMLVLLVRKGGAALAPRVDSAVTHVLV 201
M + + GG Y+ +L T LIA AEG+KY+ ARKW +I++V+R W Q RKVC + E+FPVL + L G G+GK L + S+ P +Q+ + S + P V +E +G D E S + + L C +FL G + A++++R LV LVR+GG + ++ +TH++V
Sbjct: 205 MEKVISEYGGRYSAELTRSCTH-LIADVAEGDKYKVARKWGHIQIVTRKWFQQSIDRKVCLNEESFPVLSSIPLTRGLRDSGIHNGQGKFPLPAAVSVSVADSNASCAQSRDSDTEPSASQD--IFSTSMNPSTDVKEPSEGLSTSPQEQDIDGCTARDSE----SEDNDLYLSDCRIFLLGFE--ASEMRR-LVKLVRRGGGSRYMLLNERMTHIVV 412
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G00230.2 ID=NO17G00230.2|Name=NO17G00230.2|organism=Nannochloropsis oceanica|type=mRNA|length=2738bp
TGGCCAGTCGTGGAGCATTCATTTCGGGTTAGTGGGAGGTCTCTAATTCC
GCCTTTCTTTCTCCAGGTCACACAACCCGCGTGTATACATGCATGTATAA
TTGTAAGGTCTTCATGTCCACCGTACGTGCTTACCTACAGCGACACGCCC
ACAAAGCGACAGTGTAAAGGAGACAGCGCCGAATCGGTCACGTCACGTCA
TGGAGGAAGCCTCGCCAACTTCACTTTCGTCGATCGTTCCTCCTCATCAC
CTCCCTCCTCTCTATCACATCGCATACAGATCTCGCAGCTAAATACCCCC
CAGTATAGGTAGCGCGGTACTTCCTTCCTGTCTGGCAATGGGCAGTCCAT
CCACGGCCTCGACCGCCAAGGGGTTTGGAGATGCACCGCCGCGGACTGCA
ATCCAGCAAGGTGGAGGAAGAGGACGAGGAGGAGGAGGACGGTCGACCAT
GCAAAACTTACCACCGCAAGTCTTCCGGAAAATGACGCTCAGTAGCACGG
GCTTTTCCGAACAGACGAATATTAATTTTCGCAGCCTCGTGGAGAAGCAT
GGCGGCGAGTTTACCACTCACTTTAATGTGCATGTGACCGCGCTTATTGC
CTCAGCGGTGGACACGGAGAAATACCGGGGCGCCGTCAAATTCGGCACGC
CCATTGTCACGCGCGCCTGGCTGGACGCCTCGATCGCCCATGGGAAGGCA
GCTGACTTCGCCTCTTACCTTTTGCCTCCTCTGTACGAGCTCAAGGTGAC
CAGCACGGGGTTCATGCCCGGTAAAAGACGGAAGGAGGGAGGGCGGGAGG
GAGGAAAGGGGTGAGTGTCCTCGTCAATCTCATAAACTCCCTTACCTCTA
TCCCTCCCTCCCTCCCTCCCTCCTCCTGTAGACGAGAAGCGAGAGATGAG
AGAGGCCGTGGAACGGTTGGGAGGCGTTTACGCAACGGATTTGGAGATGG
ACTTTACGTCCTTCCTCATCGCCCGCCGTGCAGAGGGAGAGAAATACCAG
GCCGCCCGAAAATGGAACATCCGGGTAGTCAGCCGTGACTGGCTCCAGGC
CTGCGAGCGACGGAAAGTCTGTGACTCCGGCGAAGCTTTTCCAGTGCTTC
CCACATCCCATTCCCCTCCCCCTCTCCACAAGGAGGGAGGGAGGGAGGGA
AGGGGGAAGGGGGGGCTGGCCCGCTCTCATTCCATTGGGCCTCCAATAGC
GCAGGAGCTCCCTCTTCTCTCCCACCTCGTCCGCCCCGAGGCCCTGGTTC
ACCTGGCGGGAGGAGACAGATACGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGCACGTGGGAGGATGACGTGGAGGCAGCTCTTCCCTCCCTCCCTTCCTC
GATGGCGCTGGATGGATGCGTGGTATTTTTGGCGGGAAAAGACAGAATAG
CGACGAAACTCAAGAGGATGCTCGTCCTCCTTGTGCGCAAGGGCGGCGCC
GCCCTCGCCCCTCGGGTGGACTCGGCAGTGACGCATGTCCTGGTCGCACA
CGTGATGTTTTTGACCTCCAGCAATGTGCAGCAGCTGGTAAAGCACCCGA
CCTCGCCCCTAGTCGTCACCCGCGAGTGGCTCCTTGCCTCCGTCCGAGCC
CAGCGGCCGCTGTGCCCCACAGAGGAAGGGGGGGAGGGAGGAGGGGAGGG
AGGAGGGGCAGTGTTCAGGGTGCTTAAGAAGGAAGGTGGGGGGGGGGGGG
AGGAGGAGGAGGAAGACGGGATGGAAGGACGGCGCTCTTGTTCCCTCCTT
CATCAACTTCAACGGCTCCCTCATCCTTGCGGCGGTCGCACACGTTCTCC
GCAAGCAGTGTGGGTGTTGGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGC
GGGGGGGGGGGGGTAACCGCGTCCCCTCTTGGAGAGGCTTGTCAGAGGAG
GGCCCAAGGGAGGGGAAGAGGATGAAAAAGAACAAGTACTCCATGGAGAG
CGACGGGGATGGGGAGGAGGAGGGAGGGGTGGGGGAACCGAAAGAGGAGG
AGGAAGAGAGAAGGTGGGAAGGCCTGGTGGAGGATGATGCCGACGACGGC
GTCACACCACAAAATGCAGCAGCAACAACAGCCTCATCAGCAGCAGCAAC
AGCGGCAGCAGCAGCAGCAGCAGCACCACCACCAGCAGCAGTAGCAGTAA
CAGCAGCAGGTCTACCTCCTCTTTCACCCCCATCTCCCCCCACCCTCCAT
ACGGCCGCTTCATCCATCTTTCCCAAGCCCCTCCCTTCCACCCGCGGTCC
CTGGAAGAGCCTCGTTTCGTCCTCCAGCTCTTCCTCCTCCTCCTCCTCTT
CTTCTTCCTCCCTCAGGAAGCGCCCCCTCTCCCTAGGCGGGAGCATCAAC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCACCTCCACCATCGCAAC
GACCGCCCACCTTCCCTCCCACCAGCCCCCCCTCGGTCCTCGCCGTCGCT
CGCTCTTTGATTGTGCCCTTAGGCAGAAGGAGGACTCTCAGCCACAGAAC
GGTAACGGGGAGGGGTCAGCCCTGCCGGACGAAAGCCAGGTCGTTGTGTA
CGGGGATGGGTGAAGCCTTTCCTCCTTCACTCCTTCCCTCCCTCCCTTCC
TCCCTCCCTCCTCTTTTTTCTCGCGGCTGTAGACGAGGTAGGAGGAAGTA
AAGGAAGCGGCTTGAGAACAGTTAAGAGTCCATGAGAGTAGACAAGAAAT
GTAAGACGTCTGCCACGTTTTTTGGCGCGAAATCGGGG back to topprotein sequence of NO17G00230.2 >NO17G00230.2-protein ID=NO17G00230.2-protein|Name=NO17G00230.2|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MREAVERLGGVYATDLEMDFTSFLIARRAEGEKYQAARKWNIRVVSRDWL
QACERRKVCDSGEAFPVLPTSHSPPPLHKEGGREGRGKGGLARSHSIGPP
IAQELPLLSHLVRPEALVHLAGGDRYEGGREGGREGTWEDDVEAALPSLP
SSMALDGCVVFLAGKDRIATKLKRMLVLLVRKGGAALAPRVDSAVTHVLV
AHVMFLTSSNVQQLVKHPTSPLVVTREWLLASVRAQRPLCPTEEGGEGGG
EGGGAVFRVLKKEGGGGGEEEEEDGMEGRRSCSLLHQLQRLPHPCGGRTR
SPQAVWVLGGREGGREGGRGGGGNRVPSWRGLSEEGPREGKRMKKNKYSM
ESDGDGEEEGGVGEPKEEEEERRWEGLVEDDADDGVTPQNAAATTASSAA
ATAAAAAAAAPPPAAVAVTAAGLPPLSPPSPPTLHTAASSIFPKPLPSTR
GPWKSLVSSSSSSSSSSSSSSSLRKRPLSLGGSINPPSLPPSLPPATSTI
ATTAHLPSHQPPLGPRRRSLFDCALRQKEDSQPQNGNGEGSALPDESQVV
VYGDG* back to topmRNA from alignment at chr17:80485..84262- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G00230.2 ID=NO17G00230.2|Name=NO17G00230.2|organism=Nannochloropsis oceanica|type=mRNA|length=3778bp|location=Sequence derived from alignment at chr17:80485..84262- (Nannochloropsis oceanica)
TGGCCAGTCGTGGAGCATTCATTTCGGGTTAGTGGGAGGTCTCTAATTCC
GCCTTTCTTTCTCCAGGTCACACAACCCGCGTGTATACATGCATGTATAA
TTGTAAGGTCTTCATGTCCACCGTACGTGCTTACCTACAGCGACACGCCC
ACAAAGCGACAGTGTAAAGGAGACAGCGCCGAATCGGTCACGTCACGTCA
TGGAGGAAGCCTCGCCAACTTCACTTTCGTCGATCGTTCCTCCTCATCAC
CTCCCTCCTCTCTATCACATCGCATACAGATCTCGCAGCTAAATACCCCC
CAGTATAGGTAGCGCGGTACTTCCTTCCTGTCTGGCAATGGGCAGTCCAT
CCACGGCCTCGACCGCCAAGGGGTTTGGAGATGCACCGCCGCGGACTGCA
ATCCAGCAAGGTGGAGGAAGAGGACGAGGAGGAGGAGGACGGTCGACCAT
GCAAAACTTACCACCGCAAGTCTTCCGGAAAATGACGCTCAGTAGCACGG
GCTTTTCCGAACAGACGAATGTAAGTGTATGTGGACTGGTGGTGGTGCAG
GAGACGGCACGTCTGTAAAGCAGCATCAGATACAGACATAAAGGAATTGG
TGTGCTTTCCACAACTGTGTAGCCTCTTTTCTTTCCCTCTAAGATCCTCA
CCTCCTTACCTCCATATCTCCCTCCTGCATCATATCCAGATTAATTTTCG
CAGCCTCGTGGAGAAGCATGGCGGCGAGTTTACCACTCACTTTAATGTGC
ATGTGACCGCGCTTATTGCCTCAGCGGTGGACACGGAGAAATACCGGGTA
AGGAGGTGGAAATGGAGGCAGGGAGGGAGGGTAAGGGGTAGAGATAGTGT
TCCCTTAAGAAATTCATGGAGGCAAAAAAGACTTCTGACGTTGCGTTCAT
TAATCCCTGCCCCTTCCCTCCTCCTCCCTCCCTCTCCATTCCTCCTTCAT
CTCCCCCTTCCCTCCTCCTCCATCCTCCTCCCTTCCTCTTTCATCTCCCC
CCTCCCTCCTCCTCCATCCTCAGGGCGCCGTCAAATTCGGCACGCCCATT
GTCACGCGCGCCTGGCTGGACGCCTCGATCGCCCATGGGAAGGCAGCTGA
CTTCGCCTCTTACCTTTTGCCTCCTCTGTACGAGCTCAAGGTGACCAGCA
CGGGGTTCATGCCCGGTAAAAGACGGAAGGAGGGAGGGCGGGAGGGAGGA
AAGGGGTGAGTGTCCTCGTCAATCTCATAAACTCCCTTACCTCTATCCCT
CCCTCCCTCCCTCCCTCCTCCTGTAGACGAGAAGCGAGAGATGAGAGAGG
CCGTGGAACGGTTGGGAGGCGTTTACGCAACGGATTTGGAGATGGACTTT
ACGTCCTTCCTCATCGCCCGCCGTGCAGAGGGAGAGAAATACCAGGCCGC
CCGAAAATGGAACATCCGGGTAGTCAGCCGTGACTGGCTCCAGGCCTGCG
AGCGACGGAAAGGTGAAGCTCTTCTTCTCGCCCTCCCTCCCTTGCTCTTC
CTGTCCCCCTTTCCCTCCCTCCCTCCCTCCTTTTTATCGTTCTTCTTGCT
TCGTGGTGGCCTAGTAACCGTGCACTTATCCATCCCTCCTACCCTTCCTC
CCTCCGTCCCTCCCTCCTTCCTTCAGTCTGTGACTCCGGCGAAGCTTTTC
CAGTGCTTCCCACATCCCATTCCCCTCCCCCTCTCCACAAGGAGGGAGGG
AGGGAGGGAAGGGGGAAGGGGGGGCTGGCCCGCTCTCATTCCATTGGGCC
TCCAATAGCGCAGGTACTGAAGGAGGGAGGGAGGGAGGGAGGAAGGGAGG
GAGGGAGGGAGGGAGGCAGGCATGGGTCAATTACTCCACGTGTCTATACG
ACGCGCGTTCGCTTCTTTCCTCCCTCACACTCCTTCCCTCCCTCCTTACC
TCCCTTCCTCCCCCCCCAATTTATTCAGGAGCTCCCTCTTCTCTCCCACC
TCGTCCGCCCCGAGGCCCTGGTTCACCTGGCGGGAGGAGACAGATACGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGCACGTGGGAGGATGACGTGGAGGC
AGCTCTTCCCTCCCTCCCTTCCTCGATGGCGCTGGATGGATGCGTGGTAT
TTTTGGCGGGAAAAGACAGAATAGCGACGGTACGAAGGAGAGAGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAAAACTGGTTCGAATGCGC
AGAAGGAAAGACCCAAAAAAAACAGCCACACACACAGGCTTCGTCCCTTC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCTCTCCCCCCCTCCCCAGAAACT
CAAGAGGATGCTCGTCCTCCTTGTGCGCAAGGGCGGCGCCGCCCTCGCCC
CTCGGGTGGACTCGGCAGTGACGCATGTCCTGGTCGCACACGTGATGTTT
TTGACCTCCAGGTAGGGAAGGAGGGAGGGAGGGAGACGAAAGGACCAAAA
GCCACGAGGGGCTTGTCGGGAAAGCAGGCAGCCACGGCAGAACTCAAACC
CGTCCTCCCTCCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCGTCCTTCCG
ATTGTCCTCAGCAATGTGCAGCAGCTGGTAAAGCACCCGACCTCGCCCCT
AGTCGTCACCCGCGAGTGGCTCCTTGCCTCCGTCCGAGCCCAGCGGCCGC
TGTGCCCCACAGAGGAAGGGGGGGAGGGAGGAGGGGAGGGAGGAGGGGCA
GTGTTCAGGGTGCTTAAGAAGGAAGGTGGGGGGGGGGGGGAGGAGGAGGA
GGAAGACGGGATGGAAGGACGGCGCTCTTGTTCCCTCCTTCATCAACTTC
AACGGCTCCCTCATCCTTGCGGCGGTCGCACACGTTCTCCGCAAGCAGTG
TGGGTGTTGGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGCGGGGGGGGGG
GGGTAACCGCGTCCCCTCTTGGAGAGGCTTGTCAGAGGAGGGCCCAAGGG
AGGGGAAGAGGATGAAAAAGAACAAGTACTCCATGGAGAGCGACGGGGAT
GGGGAGGAGGAGGGAGGGGTGGGGGAACCGAAAGAGGAGGAGGAAGAGAG
AAGGTGGGAAGGCCTGGTGGAGGATGATGCCGACGACGGCGTCACACCAC
AAAATGCAGCAGCAACAACAGCCTCATCAGCAGCAGCAACAGCGGCAGCA
GCAGCAGCAGCAGCACCACCACCAGCAGCAGTAGCAGTAACAGCAGCAGG
TCTACCTCCTCTTTCACCCCCATCTCCCCCCACCCTCCATACGGCCGCTT
CATCCATCTTTCCCAAGCCCCTCCCTTCCACCCGCGGTCCCTGGAAGAGC
CTCGTTTCGTCCTCCAGCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCCTC
CCTCAGGAAGCGCCCCCTCTCCCTAGGCGGGAGCATCAACCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCGCCACCTCCACCATCGCAACGACCGCCCAC
CTTCCCTCCCACCAGCCCCCCCTCGGTCCTCGCCGTCGCTCGCTCTTTGA
TTGTGCCCTTAGGCAGAAGGAGGACTCTCAGCCACAGAACGGTAACGGGG
AGGGGTCAGCCCTGCCGGACGAAAGCCAGGTCGTTGTGTACGGGGATGGG
TGAAGCCTTTCCTCCTTCACTCCTTCCCTCCCTCCCTTCCTCCCTCCCTC
CTCTTTTTTCTCGCGGCTGTAGACGAGGTAGGAGGAAGTAAAGGAAGCGG
CTTGAGAACAGTTAAGAGTCCATGAGAGTAGACAAGAAATGTAAGACGTC
TGCCACGTTTTTTGGCGCGAAATCGGGG back to topCoding sequence (CDS) from alignment at chr17:80485..84262- >NO17G00230.2 ID=NO17G00230.2|Name=NO17G00230.2|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr17:80485..84262- (Nannochloropsis oceanica)
ATGAGAGAGGCCGTGGAACGGTTGGGAGGCGTTTACGCAACGGATTTGGA
GATGGACTTTACGTCCTTCCTCATCGCCCGCCGTGCAGAGGGAGAGAAAT
ACCAGGCCGCCCGAAAATGGAACATCCGGGTAGTCAGCCGTGACTGGCTC
CAGGCCTGCGAGCGACGGAAAGTCTGTGACTCCGGCGAAGCTTTTCCAGT
GCTTCCCACATCCCATTCCCCTCCCCCTCTCCACAAGGAGGGAGGGAGGG
AGGGAAGGGGGAAGGGGGGGCTGGCCCGCTCTCATTCCATTGGGCCTCCA
ATAGCGCAGGAGCTCCCTCTTCTCTCCCACCTCGTCCGCCCCGAGGCCCT
GGTTCACCTGGCGGGAGGAGACAGATACGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGCACGTGGGAGGATGACGTGGAGGCAGCTCTTCCCTCCCTCCCT
TCCTCGATGGCGCTGGATGGATGCGTGGTATTTTTGGCGGGAAAAGACAG
AATAGCGACGAAACTCAAGAGGATGCTCGTCCTCCTTGTGCGCAAGGGCG
GCGCCGCCCTCGCCCCTCGGGTGGACTCGGCAGTGACGCATGTCCTGGTC
GCACACGTGATGTTTTTGACCTCCAGCAATGTGCAGCAGCTGGTAAAGCA
CCCGACCTCGCCCCTAGTCGTCACCCGCGAGTGGCTCCTTGCCTCCGTCC
GAGCCCAGCGGCCGCTGTGCCCCACAGAGGAAGGGGGGGAGGGAGGAGGG
GAGGGAGGAGGGGCAGTGTTCAGGGTGCTTAAGAAGGAAGGTGGGGGGGG
GGGGGAGGAGGAGGAGGAAGACGGGATGGAAGGACGGCGCTCTTGTTCCC
TCCTTCATCAACTTCAACGGCTCCCTCATCCTTGCGGCGGTCGCACACGT
TCTCCGCAAGCAGTGTGGGTGTTGGGGGGAAGGGAGGGAGGGAGGGAGGG
AGGGCGGGGGGGGGGGGGTAACCGCGTCCCCTCTTGGAGAGGCTTGTCAG
AGGAGGGCCCAAGGGAGGGGAAGAGGATGAAAAAGAACAAGTACTCCATG
GAGAGCGACGGGGATGGGGAGGAGGAGGGAGGGGTGGGGGAACCGAAAGA
GGAGGAGGAAGAGAGAAGGTGGGAAGGCCTGGTGGAGGATGATGCCGACG
ACGGCGTCACACCACAAAATGCAGCAGCAACAACAGCCTCATCAGCAGCA
GCAACAGCGGCAGCAGCAGCAGCAGCAGCACCACCACCAGCAGCAGTAGC
AGTAACAGCAGCAGGTCTACCTCCTCTTTCACCCCCATCTCCCCCCACCC
TCCATACGGCCGCTTCATCCATCTTTCCCAAGCCCCTCCCTTCCACCCGC
GGTCCCTGGAAGAGCCTCGTTTCGTCCTCCAGCTCTTCCTCCTCCTCCTC
CTCTTCTTCTTCCTCCCTCAGGAAGCGCCCCCTCTCCCTAGGCGGGAGCA
TCAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCACCTCCACCATC
GCAACGACCGCCCACCTTCCCTCCCACCAGCCCCCCCTCGGTCCTCGCCG
TCGCTCGCTCTTTGATTGTGCCCTTAGGCAGAAGGAGGACTCTCAGCCAC
AGAACGGTAACGGGGAGGGGTCAGCCCTGCCGGACGAAAGCCAGGTCGTT
GTGTACGGGGATGGGTGA back to top
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