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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:80485..84262 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G00230.1 vs.
Match: OON06083.1 (hypothetical protein BSLG_04176 [Batrachochytrium salamandrivorans]) HSP 1 Score: 109.0 bits (271), Expect = 6.100e-20 Identity = 60/164 (36.59%), Postives = 90/164 (54.88%), Query Frame = 0
Query: 65 RSLVEKH----GGEFTTHFNVHVTALIASAVDTEKYRGAVKFGTPIVTRAWLDASIAHGKAADFASYLLPPLYELKVTSTGFMPDEKREMREAVERLGGVYATDLEMDFTSFLIARRAEGEKYQAARKWNIRVVSRDWLQAC--ERRKVCDSGEAFPVLPTSHS 223
R+LVE+ GG+FT F HVT LI+S+ TEKYR A+ G PI++ W+ + F +YLLPP + V +GF + + E+ + V LGG + L D T LI G KY+ AR+W + +VS +WL C +R +V ++G + + P+ S
Sbjct: 20 RNLVERRVVELGGQFTGCFTTHVTHLISSSTSTEKYRVALDLGVPIISPPWVSCLESSDDIEPFENYLLPPFKGILVCVSGFPTEVRHEIEQRVMELGGAFTLVLSKDCT-HLICISPSGRKYEFAREWQLEIVSTEWLNECCKQRGRVMEAG--YRISPSGQS 180
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G00230.1 ID=NO17G00230.1|Name=NO17G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2627bp TGGCCAGTCGTGGAGCATTCATTTCGGGTTAGTGGGAGGTCTCTAATTCC GCCTTTCTTTCTCCAGGTCACACAACCCGCGTGTATACATGCATGTATAA TTGTAAGGTCTTCATGTCCACCGTACGTGCTTACCTACAGCGACACGCCC ACAAAGCGACAGTGTAAAGGAGACAGCGCCGAATCGGTCACGTCACGTCA TGGAGGAAGCCTCGCCAACTTCACTTTCGTCGATCGTTCCTCCTCATCAC CTCCCTCCTCTCTATCACATCGCATACAGATCTCGCAGCTAAATACCCCC CAGTATAGGTAGCGCGGTACTTCCTTCCTGTCTGGCAATGGGCAGTCCAT CCACGGCCTCGACCGCCAAGGGGTTTGGAGATGCACCGCCGCGGACTGCA ATCCAGCAAGGTGGAGGAAGAGGACGAGGAGGAGGAGGACGGTCGACCAT GCAAAACTTACCACCGCAAGTCTTCCGGAAAATGACGCTCAGTAGCACGG GCTTTTCCGAACAGACGAATATTAATTTTCGCAGCCTCGTGGAGAAGCAT GGCGGCGAGTTTACCACTCACTTTAATGTGCATGTGACCGCGCTTATTGC CTCAGCGGTGGACACGGAGAAATACCGGGGCGCCGTCAAATTCGGCACGC CCATTGTCACGCGCGCCTGGCTGGACGCCTCGATCGCCCATGGGAAGGCA GCTGACTTCGCCTCTTACCTTTTGCCTCCTCTGTACGAGCTCAAGGTGAC CAGCACGGGGTTCATGCCCGACGAGAAGCGAGAGATGAGAGAGGCCGTGG AACGGTTGGGAGGCGTTTACGCAACGGATTTGGAGATGGACTTTACGTCC TTCCTCATCGCCCGCCGTGCAGAGGGAGAGAAATACCAGGCCGCCCGAAA ATGGAACATCCGGGTAGTCAGCCGTGACTGGCTCCAGGCCTGCGAGCGAC GGAAAGTCTGTGACTCCGGCGAAGCTTTTCCAGTGCTTCCCACATCCCAT TCCCCTCCCCCTCTCCACAAGGAGGGAGGGAGGGAGGGAAGGGGGAAGGG GGGGCTGGCCCGCTCTCATTCCATTGGGCCTCCAATAGCGCAGGAGCTCC CTCTTCTCTCCCACCTCGTCCGCCCCGAGGCCCTGGTTCACCTGGCGGGA GGAGACAGATACGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCACGTGGGA GGATGACGTGGAGGCAGCTCTTCCCTCCCTCCCTTCCTCGATGGCGCTGG ATGGATGCGTGGTATTTTTGGCGGGAAAAGACAGAATAGCGACGAAACTC AAGAGGATGCTCGTCCTCCTTGTGCGCAAGGGCGGCGCCGCCCTCGCCCC TCGGGTGGACTCGGCAGTGACGCATGTCCTGGTCGCACACGTGATGTTTT TGACCTCCAGCAATGTGCAGCAGCTGGTAAAGCACCCGACCTCGCCCCTA GTCGTCACCCGCGAGTGGCTCCTTGCCTCCGTCCGAGCCCAGCGGCCGCT GTGCCCCACAGAGGAAGGGGGGGAGGGAGGAGGGGAGGGAGGAGGGGCAG TGTTCAGGGTGCTTAAGAAGGAAGGTGGGGGGGGGGGGGAGGAGGAGGAG GAAGACGGGATGGAAGGACGGCGCTCTTGTTCCCTCCTTCATCAACTTCA ACGGCTCCCTCATCCTTGCGGCGGTCGCACACGTTCTCCGCAAGCAGTGT GGGTGTTGGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGCGGGGGGGGGGG GGTAACCGCGTCCCCTCTTGGAGAGGCTTGTCAGAGGAGGGCCCAAGGGA GGGGAAGAGGATGAAAAAGAACAAGTACTCCATGGAGAGCGACGGGGATG GGGAGGAGGAGGGAGGGGTGGGGGAACCGAAAGAGGAGGAGGAAGAGAGA AGGTGGGAAGGCCTGGTGGAGGATGATGCCGACGACGGCGTCACACCACA AAATGCAGCAGCAACAACAGCCTCATCAGCAGCAGCAACAGCGGCAGCAG CAGCAGCAGCAGCACCACCACCAGCAGCAGTAGCAGTAACAGCAGCAGGT CTACCTCCTCTTTCACCCCCATCTCCCCCCACCCTCCATACGGCCGCTTC ATCCATCTTTCCCAAGCCCCTCCCTTCCACCCGCGGTCCCTGGAAGAGCC TCGTTTCGTCCTCCAGCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCCTCC CTCAGGAAGCGCCCCCTCTCCCTAGGCGGGAGCATCAACCCTCCCTCCCT CCCTCCCTCCCTCCCTCCCGCCACCTCCACCATCGCAACGACCGCCCACC TTCCCTCCCACCAGCCCCCCCTCGGTCCTCGCCGTCGCTCGCTCTTTGAT TGTGCCCTTAGGCAGAAGGAGGACTCTCAGCCACAGAACGGTAACGGGGA GGGGTCAGCCCTGCCGGACGAAAGCCAGGTCGTTGTGTACGGGGATGGGT GAAGCCTTTCCTCCTTCACTCCTTCCCTCCCTCCCTTCCTCCCTCCCTCC TCTTTTTTCTCGCGGCTGTAGACGAGGTAGGAGGAAGTAAAGGAAGCGGC TTGAGAACAGTTAAGAGTCCATGAGAGTAGACAAGAAATGTAAGACGTCT GCCACGTTTTTTGGCGCGAAATCGGGG back to topprotein sequence of NO17G00230.1 >NO17G00230.1-protein ID=NO17G00230.1-protein|Name=NO17G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp MGSPSTASTAKGFGDAPPRTAIQQGGGRGRGGGGRSTMQNLPPQVFRKMT LSSTGFSEQTNINFRSLVEKHGGEFTTHFNVHVTALIASAVDTEKYRGAV KFGTPIVTRAWLDASIAHGKAADFASYLLPPLYELKVTSTGFMPDEKREM REAVERLGGVYATDLEMDFTSFLIARRAEGEKYQAARKWNIRVVSRDWLQ ACERRKVCDSGEAFPVLPTSHSPPPLHKEGGREGRGKGGLARSHSIGPPI AQELPLLSHLVRPEALVHLAGGDRYEGGREGGREGTWEDDVEAALPSLPS SMALDGCVVFLAGKDRIATKLKRMLVLLVRKGGAALAPRVDSAVTHVLVA HVMFLTSSNVQQLVKHPTSPLVVTREWLLASVRAQRPLCPTEEGGEGGGE GGGAVFRVLKKEGGGGGEEEEEDGMEGRRSCSLLHQLQRLPHPCGGRTRS PQAVWVLGGREGGREGGRGGGGNRVPSWRGLSEEGPREGKRMKKNKYSME SDGDGEEEGGVGEPKEEEEERRWEGLVEDDADDGVTPQNAAATTASSAAA TAAAAAAAAPPPAAVAVTAAGLPPLSPPSPPTLHTAASSIFPKPLPSTRG PWKSLVSSSSSSSSSSSSSSSLRKRPLSLGGSINPPSLPPSLPPATSTIA TTAHLPSHQPPLGPRRRSLFDCALRQKEDSQPQNGNGEGSALPDESQVVV YGDG* back to topmRNA from alignment at chr17:80485..84262- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G00230.1 ID=NO17G00230.1|Name=NO17G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=3778bp|location=Sequence derived from alignment at chr17:80485..84262- (Nannochloropsis oceanica) TGGCCAGTCGTGGAGCATTCATTTCGGGTTAGTGGGAGGTCTCTAATTCC
GCCTTTCTTTCTCCAGGTCACACAACCCGCGTGTATACATGCATGTATAA
TTGTAAGGTCTTCATGTCCACCGTACGTGCTTACCTACAGCGACACGCCC
ACAAAGCGACAGTGTAAAGGAGACAGCGCCGAATCGGTCACGTCACGTCA
TGGAGGAAGCCTCGCCAACTTCACTTTCGTCGATCGTTCCTCCTCATCAC
CTCCCTCCTCTCTATCACATCGCATACAGATCTCGCAGCTAAATACCCCC
CAGTATAGGTAGCGCGGTACTTCCTTCCTGTCTGGCAATGGGCAGTCCAT
CCACGGCCTCGACCGCCAAGGGGTTTGGAGATGCACCGCCGCGGACTGCA
ATCCAGCAAGGTGGAGGAAGAGGACGAGGAGGAGGAGGACGGTCGACCAT
GCAAAACTTACCACCGCAAGTCTTCCGGAAAATGACGCTCAGTAGCACGG
GCTTTTCCGAACAGACGAATGTAAGTGTATGTGGACTGGTGGTGGTGCAG
GAGACGGCACGTCTGTAAAGCAGCATCAGATACAGACATAAAGGAATTGG
TGTGCTTTCCACAACTGTGTAGCCTCTTTTCTTTCCCTCTAAGATCCTCA
CCTCCTTACCTCCATATCTCCCTCCTGCATCATATCCAGATTAATTTTCG
CAGCCTCGTGGAGAAGCATGGCGGCGAGTTTACCACTCACTTTAATGTGC
ATGTGACCGCGCTTATTGCCTCAGCGGTGGACACGGAGAAATACCGGGTA
AGGAGGTGGAAATGGAGGCAGGGAGGGAGGGTAAGGGGTAGAGATAGTGT
TCCCTTAAGAAATTCATGGAGGCAAAAAAGACTTCTGACGTTGCGTTCAT
TAATCCCTGCCCCTTCCCTCCTCCTCCCTCCCTCTCCATTCCTCCTTCAT
CTCCCCCTTCCCTCCTCCTCCATCCTCCTCCCTTCCTCTTTCATCTCCCC
CCTCCCTCCTCCTCCATCCTCAGGGCGCCGTCAAATTCGGCACGCCCATT
GTCACGCGCGCCTGGCTGGACGCCTCGATCGCCCATGGGAAGGCAGCTGA
CTTCGCCTCTTACCTTTTGCCTCCTCTGTACGAGCTCAAGGTGACCAGCA
CGGGGTTCATGCCCGGTAAAAGACGGAAGGAGGGAGGGCGGGAGGGAGGA
AAGGGGTGAGTGTCCTCGTCAATCTCATAAACTCCCTTACCTCTATCCCT
CCCTCCCTCCCTCCCTCCTCCTGTAGACGAGAAGCGAGAGATGAGAGAGG
CCGTGGAACGGTTGGGAGGCGTTTACGCAACGGATTTGGAGATGGACTTT
ACGTCCTTCCTCATCGCCCGCCGTGCAGAGGGAGAGAAATACCAGGCCGC
CCGAAAATGGAACATCCGGGTAGTCAGCCGTGACTGGCTCCAGGCCTGCG
AGCGACGGAAAGGTGAAGCTCTTCTTCTCGCCCTCCCTCCCTTGCTCTTC
CTGTCCCCCTTTCCCTCCCTCCCTCCCTCCTTTTTATCGTTCTTCTTGCT
TCGTGGTGGCCTAGTAACCGTGCACTTATCCATCCCTCCTACCCTTCCTC
CCTCCGTCCCTCCCTCCTTCCTTCAGTCTGTGACTCCGGCGAAGCTTTTC
CAGTGCTTCCCACATCCCATTCCCCTCCCCCTCTCCACAAGGAGGGAGGG
AGGGAGGGAAGGGGGAAGGGGGGGCTGGCCCGCTCTCATTCCATTGGGCC
TCCAATAGCGCAGGTACTGAAGGAGGGAGGGAGGGAGGGAGGAAGGGAGG
GAGGGAGGGAGGGAGGCAGGCATGGGTCAATTACTCCACGTGTCTATACG
ACGCGCGTTCGCTTCTTTCCTCCCTCACACTCCTTCCCTCCCTCCTTACC
TCCCTTCCTCCCCCCCCAATTTATTCAGGAGCTCCCTCTTCTCTCCCACC
TCGTCCGCCCCGAGGCCCTGGTTCACCTGGCGGGAGGAGACAGATACGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGCACGTGGGAGGATGACGTGGAGGC
AGCTCTTCCCTCCCTCCCTTCCTCGATGGCGCTGGATGGATGCGTGGTAT
TTTTGGCGGGAAAAGACAGAATAGCGACGGTACGAAGGAGAGAGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAAAACTGGTTCGAATGCGC
AGAAGGAAAGACCCAAAAAAAACAGCCACACACACAGGCTTCGTCCCTTC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCTCTCCCCCCCTCCCCAGAAACT
CAAGAGGATGCTCGTCCTCCTTGTGCGCAAGGGCGGCGCCGCCCTCGCCC
CTCGGGTGGACTCGGCAGTGACGCATGTCCTGGTCGCACACGTGATGTTT
TTGACCTCCAGGTAGGGAAGGAGGGAGGGAGGGAGACGAAAGGACCAAAA
GCCACGAGGGGCTTGTCGGGAAAGCAGGCAGCCACGGCAGAACTCAAACC
CGTCCTCCCTCCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCGTCCTTCCG
ATTGTCCTCAGCAATGTGCAGCAGCTGGTAAAGCACCCGACCTCGCCCCT
AGTCGTCACCCGCGAGTGGCTCCTTGCCTCCGTCCGAGCCCAGCGGCCGC
TGTGCCCCACAGAGGAAGGGGGGGAGGGAGGAGGGGAGGGAGGAGGGGCA
GTGTTCAGGGTGCTTAAGAAGGAAGGTGGGGGGGGGGGGGAGGAGGAGGA
GGAAGACGGGATGGAAGGACGGCGCTCTTGTTCCCTCCTTCATCAACTTC
AACGGCTCCCTCATCCTTGCGGCGGTCGCACACGTTCTCCGCAAGCAGTG
TGGGTGTTGGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGCGGGGGGGGGG
GGGTAACCGCGTCCCCTCTTGGAGAGGCTTGTCAGAGGAGGGCCCAAGGG
AGGGGAAGAGGATGAAAAAGAACAAGTACTCCATGGAGAGCGACGGGGAT
GGGGAGGAGGAGGGAGGGGTGGGGGAACCGAAAGAGGAGGAGGAAGAGAG
AAGGTGGGAAGGCCTGGTGGAGGATGATGCCGACGACGGCGTCACACCAC
AAAATGCAGCAGCAACAACAGCCTCATCAGCAGCAGCAACAGCGGCAGCA
GCAGCAGCAGCAGCACCACCACCAGCAGCAGTAGCAGTAACAGCAGCAGG
TCTACCTCCTCTTTCACCCCCATCTCCCCCCACCCTCCATACGGCCGCTT
CATCCATCTTTCCCAAGCCCCTCCCTTCCACCCGCGGTCCCTGGAAGAGC
CTCGTTTCGTCCTCCAGCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCCTC
CCTCAGGAAGCGCCCCCTCTCCCTAGGCGGGAGCATCAACCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCGCCACCTCCACCATCGCAACGACCGCCCAC
CTTCCCTCCCACCAGCCCCCCCTCGGTCCTCGCCGTCGCTCGCTCTTTGA
TTGTGCCCTTAGGCAGAAGGAGGACTCTCAGCCACAGAACGGTAACGGGG
AGGGGTCAGCCCTGCCGGACGAAAGCCAGGTCGTTGTGTACGGGGATGGG
TGAAGCCTTTCCTCCTTCACTCCTTCCCTCCCTCCCTTCCTCCCTCCCTC
CTCTTTTTTCTCGCGGCTGTAGACGAGGTAGGAGGAAGTAAAGGAAGCGG
CTTGAGAACAGTTAAGAGTCCATGAGAGTAGACAAGAAATGTAAGACGTC
TGCCACGTTTTTTGGCGCGAAATCGGGG back to topCoding sequence (CDS) from alignment at chr17:80485..84262- >NO17G00230.1 ID=NO17G00230.1|Name=NO17G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=2115bp|location=Sequence derived from alignment at chr17:80485..84262- (Nannochloropsis oceanica) ATGGGCAGTCCATCCACGGCCTCGACCGCCAAGGGGTTTGGAGATGCACC GCCGCGGACTGCAATCCAGCAAGGTGGAGGAAGAGGACGAGGAGGAGGAG GACGGTCGACCATGCAAAACTTACCACCGCAAGTCTTCCGGAAAATGACG CTCAGTAGCACGGGCTTTTCCGAACAGACGAATATTAATTTTCGCAGCCT CGTGGAGAAGCATGGCGGCGAGTTTACCACTCACTTTAATGTGCATGTGA CCGCGCTTATTGCCTCAGCGGTGGACACGGAGAAATACCGGGGCGCCGTC AAATTCGGCACGCCCATTGTCACGCGCGCCTGGCTGGACGCCTCGATCGC CCATGGGAAGGCAGCTGACTTCGCCTCTTACCTTTTGCCTCCTCTGTACG AGCTCAAGGTGACCAGCACGGGGTTCATGCCCGACGAGAAGCGAGAGATG AGAGAGGCCGTGGAACGGTTGGGAGGCGTTTACGCAACGGATTTGGAGAT GGACTTTACGTCCTTCCTCATCGCCCGCCGTGCAGAGGGAGAGAAATACC AGGCCGCCCGAAAATGGAACATCCGGGTAGTCAGCCGTGACTGGCTCCAG GCCTGCGAGCGACGGAAAGTCTGTGACTCCGGCGAAGCTTTTCCAGTGCT TCCCACATCCCATTCCCCTCCCCCTCTCCACAAGGAGGGAGGGAGGGAGG GAAGGGGGAAGGGGGGGCTGGCCCGCTCTCATTCCATTGGGCCTCCAATA GCGCAGGAGCTCCCTCTTCTCTCCCACCTCGTCCGCCCCGAGGCCCTGGT TCACCTGGCGGGAGGAGACAGATACGAGGGAGGGAGGGAGGGAGGGAGGG AGGGCACGTGGGAGGATGACGTGGAGGCAGCTCTTCCCTCCCTCCCTTCC TCGATGGCGCTGGATGGATGCGTGGTATTTTTGGCGGGAAAAGACAGAAT AGCGACGAAACTCAAGAGGATGCTCGTCCTCCTTGTGCGCAAGGGCGGCG CCGCCCTCGCCCCTCGGGTGGACTCGGCAGTGACGCATGTCCTGGTCGCA CACGTGATGTTTTTGACCTCCAGCAATGTGCAGCAGCTGGTAAAGCACCC GACCTCGCCCCTAGTCGTCACCCGCGAGTGGCTCCTTGCCTCCGTCCGAG CCCAGCGGCCGCTGTGCCCCACAGAGGAAGGGGGGGAGGGAGGAGGGGAG GGAGGAGGGGCAGTGTTCAGGGTGCTTAAGAAGGAAGGTGGGGGGGGGGG GGAGGAGGAGGAGGAAGACGGGATGGAAGGACGGCGCTCTTGTTCCCTCC TTCATCAACTTCAACGGCTCCCTCATCCTTGCGGCGGTCGCACACGTTCT CCGCAAGCAGTGTGGGTGTTGGGGGGAAGGGAGGGAGGGAGGGAGGGAGG GCGGGGGGGGGGGGGTAACCGCGTCCCCTCTTGGAGAGGCTTGTCAGAGG AGGGCCCAAGGGAGGGGAAGAGGATGAAAAAGAACAAGTACTCCATGGAG AGCGACGGGGATGGGGAGGAGGAGGGAGGGGTGGGGGAACCGAAAGAGGA GGAGGAAGAGAGAAGGTGGGAAGGCCTGGTGGAGGATGATGCCGACGACG GCGTCACACCACAAAATGCAGCAGCAACAACAGCCTCATCAGCAGCAGCA ACAGCGGCAGCAGCAGCAGCAGCAGCACCACCACCAGCAGCAGTAGCAGT AACAGCAGCAGGTCTACCTCCTCTTTCACCCCCATCTCCCCCCACCCTCC ATACGGCCGCTTCATCCATCTTTCCCAAGCCCCTCCCTTCCACCCGCGGT CCCTGGAAGAGCCTCGTTTCGTCCTCCAGCTCTTCCTCCTCCTCCTCCTC TTCTTCTTCCTCCCTCAGGAAGCGCCCCCTCTCCCTAGGCGGGAGCATCA ACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCACCTCCACCATCGCA ACGACCGCCCACCTTCCCTCCCACCAGCCCCCCCTCGGTCCTCGCCGTCG CTCGCTCTTTGATTGTGCCCTTAGGCAGAAGGAGGACTCTCAGCCACAGA ACGGTAACGGGGAGGGGTCAGCCCTGCCGGACGAAAGCCAGGTCGTTGTG TACGGGGATGGGTGA back to top
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