NO16G03230.1, NO16G03230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G03230.1
Unique NameNO16G03230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1729
Alignment locationchr16:964847..966855 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:964847..966855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G03230.1 vs.
Match: EWM23780.1 (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II [Nannochloropsis gaditana])

HSP 1 Score: 608.6 bits (1568), Expect = 1.900e-170
Identity = 327/576 (56.77%), Postives = 402/576 (69.79%), Query Frame = 0 
Query:    1 MLAARASNKATTARVETSIRPLLASSFPSTTSFPC---SSSPAHHLPYHKAPLMHP--RRLRAGWIRQHGFSTSSSLNTYRPTLYTMGEGYLGSLGQGDFEPKPYLTPVATLAPYQILDFASGWDHSAVVTTCGQLFLFGRPHDVRKALSLRHMWQTFPFLVRINQAMKGIFDSPAADASTYLREDVLLLPRAFPLPPGETPLKVACSGALTAVITESGRVFCMGHNAYGQCGVGGAVLVAAVEEEGGREGGRQAPKGQKMQKADVANVWTPMTPVQGLEKE-------GEDGEMPSCKSIKDPVVEVALGFQHALCCTRGGRAYAWGKGERGQLGNGAVVNHNSAFPIDLPVGTKVKRVASGFNHAAALTEEGKVWVWGKWQGLGMRSEG-GRGVDLYEDQLLPREVEMPGEEGGAEVVVVDVACGHFHTSLLVKAEEGGKNRWRLYMFGMRAGVRTVEPVPTPVPLPEED--GEEEGGWRFGKGGTMVHTVVERVGGRG--GVYKAEFEGEDTRFVPVCSEEQLRGGNDEALSGNQIEGHGAAVEASTSRK-----KVLKYTEGLVHRLALVED 555
            M+A R   K   A   TS+ P+  SSF       C   S+ PA  L  ++     P  R+LR         + SS   +   TLY+MGEGY+G+LG GDF+ +  LTP+  LAPYQI DFA+GW H+AVV++CG+L LFGRPHDVRKALSLRHMWQ+ PFLVRI+QAMK  FDSP   ++ +LREDVLL PRAFPLP GE P++VACSGALTA+I  SGRV+CMG N +GQCGVGG VL+  V   GGREG R  P  QKM  ADVANVWT M PVQGL++E       GE GE    + ++DPVV++ALGFQHA+CCT  GRA+AWGKGERGQLGNG  VNHN+A  +DLP GT+V +VASGFNHAAAL E G VW+WGKWQGLG RSEG G+G +LYEDQLLPREVE+P   GG +  V DV CGHFHTS+L++ E  G   WRL+MFGMR+ +R++EP  TPV LPE +  G  E  WRFG GG M HT++E V   G  GVYKAEF+GE T+FVPVCS+ + +G  +EA       G GA  ++   RK     ++L+Y EGL+HRLAL+++
Sbjct:    1 MIALRIRQKDVLAA--TSMVPVRISSFFCLGPSSCIHHSTLPARPLRGYQVAGRFPCARKLRIC------IAYSSRRISTHTTLYSMGEGYMGTLGHGDFQDRTTLTPIDALAPYQIKDFAAGWAHTAVVSSCGRLLLFGRPHDVRKALSLRHMWQSLPFLVRIHQAMKRFFDSPRKGSAAFLREDVLLSPRAFPLPEGERPVRVACSGALTAIIVASGRVYCMGQNTFGQCGVGGTVLIPGVGGSGGREGERPTP--QKMAAADVANVWTAMVPVQGLDEEELEESEVGESGEK-GMRRVRDPVVDIALGFQHAVCCTASGRAFAWGKGERGQLGNGVAVNHNAACRVDLPEGTRVVKVASGFNHAAALAEGGMVWIWGKWQGLGRRSEGTGKGSELYEDQLLPREVELP---GGVDGSVEDVGCGHFHTSVLLRGEGTGAGAWRLFMFGMRSHIRSMEPKLTPVSLPEVNLKGSGEVRWRFGTGGGMAHTLLECVDDEGVLGVYKAEFQGEWTQFVPVCSQWEAKGEGEEA------GGGGADEDSEKGRKPRRQRRMLRYGEGLIHRLALMKE 556
The following BLAST results are available for this feature:
BLAST of NO16G03230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23780.11.900e-17056.77Regulator of chromosome condensation/beta-lactamas... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G03230NO16G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G03230.1NO16G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G03230.1.cds1NO16G03230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03230.1.cds2NO16G03230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G03230.1 ID=NO16G03230.1|Name=NO16G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1729bp
AAACCACAGCACAACCAATGCTTGCTGCCCGGGCCAGCAACAAGGCGACG
ACTGCAAGGGTGGAGACCTCGATACGGCCTCTACTTGCCTCGTCCTTCCC
ATCGACGACCTCCTTCCCCTGTAGCTCCTCGCCAGCTCATCACCTGCCCT
ATCACAAGGCACCTCTCATGCACCCTCGCCGCCTCAGGGCGGGCTGGATA
AGACAGCACGGTTTCAGCACGTCTTCGTCTTTGAATACCTATCGTCCAAC
CCTCTATACTATGGGCGAGGGCTACCTCGGCTCGCTGGGTCAAGGGGACT
TCGAGCCCAAGCCCTATCTGACACCTGTTGCCACCCTCGCGCCCTACCAG
ATCCTCGACTTCGCCTCGGGCTGGGACCATTCAGCTGTGGTAACCACCTG
TGGACAGCTCTTCCTCTTCGGTCGGCCCCACGACGTCCGGAAAGCCCTCT
CCCTCCGACACATGTGGCAGACCTTCCCCTTCCTTGTCCGAATCAACCAA
GCTATGAAAGGTATCTTCGACAGCCCAGCAGCAGATGCCAGCACTTACCT
GCGGGAAGACGTCCTCCTCCTCCCTCGCGCCTTCCCCTTGCCCCCAGGGG
AAACACCTCTCAAAGTGGCGTGCTCGGGGGCTCTGACCGCCGTCATTACA
GAGAGTGGGCGCGTTTTTTGCATGGGACACAATGCCTATGGACAATGTGG
GGTTGGTGGGGCCGTTCTGGTAGCTGCGGTGGAGGAGGAGGGAGGGAGGG
AGGGAGGCAGGCAGGCGCCCAAGGGACAGAAGATGCAGAAGGCGGACGTT
GCGAACGTGTGGACGCCCATGACACCGGTGCAAGGGCTCGAGAAGGAGGG
GGAAGATGGTGAGATGCCTAGCTGTAAGAGCATCAAGGACCCGGTGGTTG
AAGTGGCCCTGGGGTTTCAGCACGCTCTCTGTTGCACCCGGGGAGGGCGG
GCCTACGCTTGGGGAAAGGGGGAGAGGGGCCAGTTGGGAAACGGCGCGGT
GGTGAACCACAACTCGGCCTTTCCAATAGACTTGCCAGTGGGAACGAAGG
TGAAGAGAGTGGCCTCGGGGTTCAACCACGCGGCGGCCCTAACGGAGGAG
GGCAAGGTGTGGGTGTGGGGTAAATGGCAGGGGCTGGGCATGCGGAGCGA
GGGGGGGCGGGGTGTGGACCTGTACGAGGACCAGCTGCTACCGAGGGAGG
TGGAGATGCCGGGGGAGGAAGGAGGGGCCGAGGTGGTGGTGGTAGACGTG
GCGTGCGGACATTTCCACACGAGCTTGCTGGTGAAGGCGGAGGAGGGAGG
GAAAAACAGGTGGCGGCTCTACATGTTTGGGATGCGGGCCGGCGTGAGGA
CCGTGGAACCTGTTCCTACACCCGTGCCCTTACCGGAAGAAGATGGCGAG
GAGGAGGGTGGATGGAGGTTCGGGAAGGGTGGGACTATGGTGCACACGGT
GGTGGAGCGGGTGGGAGGGAGAGGGGGCGTGTACAAGGCGGAGTTTGAAG
GGGAGGACACGCGATTCGTGCCTGTCTGCTCGGAGGAGCAACTGCGAGGA
GGAAACGACGAGGCACTGTCGGGAAATCAAATTGAGGGGCATGGAGCTGC
AGTAGAGGCATCCACGTCGAGGAAGAAAGTACTGAAATATACGGAAGGCT
TGGTACATCGGCTTGCCCTCGTGGAGGACGTGAAGGATGTCACACAATGA
GCCAAGTAATAAAAGTCTAATTACCATGA
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protein sequence of NO16G03230.1

>NO16G03230.1-protein ID=NO16G03230.1-protein|Name=NO16G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MLAARASNKATTARVETSIRPLLASSFPSTTSFPCSSSPAHHLPYHKAPL
MHPRRLRAGWIRQHGFSTSSSLNTYRPTLYTMGEGYLGSLGQGDFEPKPY
LTPVATLAPYQILDFASGWDHSAVVTTCGQLFLFGRPHDVRKALSLRHMW
QTFPFLVRINQAMKGIFDSPAADASTYLREDVLLLPRAFPLPPGETPLKV
ACSGALTAVITESGRVFCMGHNAYGQCGVGGAVLVAAVEEEGGREGGRQA
PKGQKMQKADVANVWTPMTPVQGLEKEGEDGEMPSCKSIKDPVVEVALGF
QHALCCTRGGRAYAWGKGERGQLGNGAVVNHNSAFPIDLPVGTKVKRVAS
GFNHAAALTEEGKVWVWGKWQGLGMRSEGGRGVDLYEDQLLPREVEMPGE
EGGAEVVVVDVACGHFHTSLLVKAEEGGKNRWRLYMFGMRAGVRTVEPVP
TPVPLPEEDGEEEGGWRFGKGGTMVHTVVERVGGRGGVYKAEFEGEDTRF
VPVCSEEQLRGGNDEALSGNQIEGHGAAVEASTSRKKVLKYTEGLVHRLA
LVEDVKDVTQ*
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mRNA from alignment at chr16:964847..966855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G03230.1 ID=NO16G03230.1|Name=NO16G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2009bp|location=Sequence derived from alignment at chr16:964847..966855- (Nannochloropsis oceanica)
AAACCACAGCACAACCAATGCTTGCTGCCCGGGCCAGCAACAAGGCGACG
ACTGCAAGGGTGGAGACCTCGATACGGCCTCTACTTGCCTCGTCCTTCCC
ATCGACGACCTCCTTCCCCTGTAGCTCCTCGCCAGCTCATCACCTGCCCT
ATCACAAGGCACCTCTCATGCACCCTCGCCGCCTCAGGGCGGGCTGGATA
AGACAGCACGGTTTCAGCACGTCTTCGTCTTTGAATACCTATCGTCCAAC
CCTCTATACTATGGGCGAGGTATGTCTCGCTTTCGCATCTCCCCCTCTGT
CCCTCCAGTCTGCGTCGTATCGAAGGTACCCCGATGCCCTACCTCAATGC
TCTTTTCGGATCGATCTAGATGACGTCCAGCCACCTCCTTTTCCCTTGTT
CTGCGTTTATATACGACAATCTGACAATCAAGAGGTGCTACCTTCTTCTC
TTTCGCTACTGATTCTCATACTGGCCCTCATCCACTCTATCACCTTCCTC
CCTCCCCCACACACCCCTCCTTCCCTCTTTCCCAACCCAACGCAAACAGG
GCTACCTCGGCTCGCTGGGTCAAGGGGACTTCGAGCCCAAGCCCTATCTG
ACACCTGTTGCCACCCTCGCGCCCTACCAGATCCTCGACTTCGCCTCGGG
CTGGGACCATTCAGCTGTGGTAACCACCTGTGGACAGCTCTTCCTCTTCG
GTCGGCCCCACGACGTCCGGAAAGCCCTCTCCCTCCGACACATGTGGCAG
ACCTTCCCCTTCCTTGTCCGAATCAACCAAGCTATGAAAGGTATCTTCGA
CAGCCCAGCAGCAGATGCCAGCACTTACCTGCGGGAAGACGTCCTCCTCC
TCCCTCGCGCCTTCCCCTTGCCCCCAGGGGAAACACCTCTCAAAGTGGCG
TGCTCGGGGGCTCTGACCGCCGTCATTACAGAGAGTGGGCGCGTTTTTTG
CATGGGACACAATGCCTATGGACAATGTGGGGTTGGTGGGGCCGTTCTGG
TAGCTGCGGTGGAGGAGGAGGGAGGGAGGGAGGGAGGCAGGCAGGCGCCC
AAGGGACAGAAGATGCAGAAGGCGGACGTTGCGAACGTGTGGACGCCCAT
GACACCGGTGCAAGGGCTCGAGAAGGAGGGGGAAGATGGTGAGATGCCTA
GCTGTAAGAGCATCAAGGACCCGGTGGTTGAAGTGGCCCTGGGGTTTCAG
CACGCTCTCTGTTGCACCCGGGGAGGGCGGGCCTACGCTTGGGGAAAGGG
GGAGAGGGGCCAGTTGGGAAACGGCGCGGTGGTGAACCACAACTCGGCCT
TTCCAATAGACTTGCCAGTGGGAACGAAGGTGAAGAGAGTGGCCTCGGGG
TTCAACCACGCGGCGGCCCTAACGGAGGAGGGCAAGGTGTGGGTGTGGGG
TAAATGGCAGGGGCTGGGCATGCGGAGCGAGGGGGGGCGGGGTGTGGACC
TGTACGAGGACCAGCTGCTACCGAGGGAGGTGGAGATGCCGGGGGAGGAA
GGAGGGGCCGAGGTGGTGGTGGTAGACGTGGCGTGCGGACATTTCCACAC
GAGCTTGCTGGTGAAGGCGGAGGAGGGAGGGAAAAACAGGTGGCGGCTCT
ACATGTTTGGGATGCGGGCCGGCGTGAGGACCGTGGAACCTGTTCCTACA
CCCGTGCCCTTACCGGAAGAAGATGGCGAGGAGGAGGGTGGATGGAGGTT
CGGGAAGGGTGGGACTATGGTGCACACGGTGGTGGAGCGGGTGGGAGGGA
GAGGGGGCGTGTACAAGGCGGAGTTTGAAGGGGAGGACACGCGATTCGTG
CCTGTCTGCTCGGAGGAGCAACTGCGAGGAGGAAACGACGAGGCACTGTC
GGGAAATCAAATTGAGGGGCATGGAGCTGCAGTAGAGGCATCCACGTCGA
GGAAGAAAGTACTGAAATATACGGAAGGCTTGGTACATCGGCTTGCCCTC
GTGGAGGACGTGAAGGATGTCACACAATGAGCCAAGTAATAAAAGTCTAA
TTACCATGA
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Coding sequence (CDS) from alignment at chr16:964847..966855-

>NO16G03230.1 ID=NO16G03230.1|Name=NO16G03230.1|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at chr16:964847..966855- (Nannochloropsis oceanica)
ATGCTTGCTGCCCGGGCCAGCAACAAGGCGACGACTGCAAGGGTGGAGAC
CTCGATACGGCCTCTACTTGCCTCGTCCTTCCCATCGACGACCTCCTTCC
CCTGTAGCTCCTCGCCAGCTCATCACCTGCCCTATCACAAGGCACCTCTC
ATGCACCCTCGCCGCCTCAGGGCGGGCTGGATAAGACAGCACGGTTTCAG
CACGTCTTCGTCTTTGAATACCTATCGTCCAACCCTCTATACTATGGGCG
AGGGCTACCTCGGCTCGCTGGGTCAAGGGGACTTCGAGCCCAAGCCCTAT
CTGACACCTGTTGCCACCCTCGCGCCCTACCAGATCCTCGACTTCGCCTC
GGGCTGGGACCATTCAGCTGTGGTAACCACCTGTGGACAGCTCTTCCTCT
TCGGTCGGCCCCACGACGTCCGGAAAGCCCTCTCCCTCCGACACATGTGG
CAGACCTTCCCCTTCCTTGTCCGAATCAACCAAGCTATGAAAGGTATCTT
CGACAGCCCAGCAGCAGATGCCAGCACTTACCTGCGGGAAGACGTCCTCC
TCCTCCCTCGCGCCTTCCCCTTGCCCCCAGGGGAAACACCTCTCAAAGTG
GCGTGCTCGGGGGCTCTGACCGCCGTCATTACAGAGAGTGGGCGCGTTTT
TTGCATGGGACACAATGCCTATGGACAATGTGGGGTTGGTGGGGCCGTTC
TGGTAGCTGCGGTGGAGGAGGAGGGAGGGAGGGAGGGAGGCAGGCAGGCG
CCCAAGGGACAGAAGATGCAGAAGGCGGACGTTGCGAACGTGTGGACGCC
CATGACACCGGTGCAAGGGCTCGAGAAGGAGGGGGAAGATGGTGAGATGC
CTAGCTGTAAGAGCATCAAGGACCCGGTGGTTGAAGTGGCCCTGGGGTTT
CAGCACGCTCTCTGTTGCACCCGGGGAGGGCGGGCCTACGCTTGGGGAAA
GGGGGAGAGGGGCCAGTTGGGAAACGGCGCGGTGGTGAACCACAACTCGG
CCTTTCCAATAGACTTGCCAGTGGGAACGAAGGTGAAGAGAGTGGCCTCG
GGGTTCAACCACGCGGCGGCCCTAACGGAGGAGGGCAAGGTGTGGGTGTG
GGGTAAATGGCAGGGGCTGGGCATGCGGAGCGAGGGGGGGCGGGGTGTGG
ACCTGTACGAGGACCAGCTGCTACCGAGGGAGGTGGAGATGCCGGGGGAG
GAAGGAGGGGCCGAGGTGGTGGTGGTAGACGTGGCGTGCGGACATTTCCA
CACGAGCTTGCTGGTGAAGGCGGAGGAGGGAGGGAAAAACAGGTGGCGGC
TCTACATGTTTGGGATGCGGGCCGGCGTGAGGACCGTGGAACCTGTTCCT
ACACCCGTGCCCTTACCGGAAGAAGATGGCGAGGAGGAGGGTGGATGGAG
GTTCGGGAAGGGTGGGACTATGGTGCACACGGTGGTGGAGCGGGTGGGAG
GGAGAGGGGGCGTGTACAAGGCGGAGTTTGAAGGGGAGGACACGCGATTC
GTGCCTGTCTGCTCGGAGGAGCAACTGCGAGGAGGAAACGACGAGGCACT
GTCGGGAAATCAAATTGAGGGGCATGGAGCTGCAGTAGAGGCATCCACGT
CGAGGAAGAAAGTACTGAAATATACGGAAGGCTTGGTACATCGGCTTGCC
CTCGTGGAGGACGTGAAGGATGTCACACAATGA
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Synonyms
Publications