NO16G02670.2, NO16G02670.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02670.2
Unique NameNO16G02670.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1664
Alignment locationchr16:770631..772803 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:770631..772803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02670.2 vs.
Match: XP_005854603.1 (nucleoside-diphosphate kinase [Nannochloropsis gaditana CCMP526]; EKU21755.1 nucleoside-diphosphate kinase [Nannochloropsis gaditana CCMP526]; EWM23836.1 nucleoside diphosphate kinase [Nannochloropsis gaditana])

HSP 1 Score: 283.1 bits (723), Expect = 8.100e-73
Identity = 146/174 (83.91%), Postives = 155/174 (89.08%), Query Frame = 0 
Query:   21 MATLRLLTLCAIVSTALAFVAMGPPSRHTAAA-TTRPTFTAWGSRGHTSSVKSLGAGRGLCMAMERTYIMAKPDAVQRGIISDIVGRFEKKGYKLVALKLVKPPRSLLEEHYESLKDKPFFPKLMEYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGR 194
            M  LRL++LCAIVSTAL+FVA GPPSRHT AA T RPTF AWG+R   S   SL   RGLCMAMERTYIMAKPDAVQRG++SDI+GRFEKKGYKLVALKLVKP RSLLEEHY+SLKDK FFP LM+YMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGR
Sbjct:    1 MEMLRLVSLCAIVSTALSFVATGPPSRHTTAAPTARPTFAAWGTRVVPSRSMSLHGSRGLCMAMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGR 174
The following BLAST results are available for this feature:
BLAST of NO16G02670.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854603.18.100e-7383.91nucleoside-diphosphate kinase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02670NO16G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02670.2NO16G02670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02670.2.cds1NO16G02670.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02670.2.cds2NO16G02670.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02670.2.cds3NO16G02670.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02670.2 ID=NO16G02670.2|Name=NO16G02670.2|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp
CTTGGCGTCGTTTCTTACTAAAGTGCATGCACGGCCAACTCGACCCACCC
CGATTCGCTCCCACATTTTGATATTGCAATACATTTTCCCGGGGTTTGCC
AGCAAAACCCACGCGGACATCCCTTGACGGAGCACGTACAACAATTCTCG
GGTAACCTCCTACCGCACGTAGGCAGCCCTCTTCACGCTTGGGCAGAGAA
GAGGCACCTACTACCTTCTTGACAGAGATGTACACAGGAAGACTATACAC
ACTGTCCATGCTGCAATTGTCAGAGAAGGCATGAATCGATCTGTTGTTTT
TAATGCGCGCAGTCCGGAACGCACACACCTCTCTCGGCGAGCCACACATA
TCTATCCCTAGCCTCACATTCCGACACAACCACACTACATGTGTGCACTG
ACCTTCCGTAGATGTGGATTCGTATATTGTCGTCATGGGGCATTTGATTG
CACTTCTGAGTCCTTTTGTCGAGTCTTTTTGGCGTCGTGGCGAACTGCAA
CTTTACAAACAAGGTGACGCGCACGATGCTGATTCACTCTCCTCTTGCAC
CATATTTCCCCAAACAGGCACGCCCCCATTTAACCATGGCGACCCTCCGT
TTGCTTACACTCTGCGCCATTGTTTCCACTGCCTTGGCCTTCGTGGCCAT
GGGTCCTCCCTCCCGCCACACCGCGGCTGCCACCACCCGCCCTACGTTCA
CAGCATGGGGCTCCCGGGGGCACACTAGCTCAGTCAAGTCTTTGGGTGCA
GGCCGCGGCCTGTGCATGGCGATGGAGCGCACCTACATCATGGCCAAGCC
CGACGCCGTTCAACGTGGCATCATCTCTGACATTGTTGGGCGGTTTGAGA
AAAAGGGGTACAAGCTCGTGGCGCTGAAATTGGTGAAGCCCCCCCGCTCC
CTGTTGGAGGAGCACTACGAGTCATTGAAGGACAAGCCCTTCTTTCCCAA
GTTAATGGAGTACATGACGAGCGGGCCCGTGGTGGCGATGGTGTGGGAGG
GTAAGAACGTGGTGGCTACCGGGCGAACGATGCTTGGGGCGACCAACCCC
CTGGAAAGCGCGCCGGGCACGATCCGCGGAGACTTCTCCATCGAGGTAGG
GAGGGAGGATGGGTGTATGGATGAAAGAAGGTGGAGGACACAAGCCGGCA
TGTCATGCGATTGGGTCAAGCTGCTCCCGTCGGACAGGACGGCTTTTGAA
AAGCGACGTCTCTTACTGACACGTACACACACAAGCAACAAGCACACACG
CCTATGACATACCATCCCCCTTGCCCCCCTTCCTTCCTCCCTCCCCTCCT
GCAGGTGGGCCGCAACATCTGCCACGGCTCGGACACGGTCGAGAATGCGG
AGCGTGAGATTAAGCTGTGGTTTGGTGAGGGGACTATCGACTGGGCCAGC
CACAGCCAGGATTGGATTTACGAGTAACGGGAAAAGAGGAGAGGGAGTGA
GGGAGGGAGTGAGGGAGGGAGGGAGGAAGGGAGGGGAGGAAGACAGGTTG
TGGTGCCCACACGCGTCACATACTATGCGATGTGTGTTATGGAACTTGAA
ATGGCAATTTTCACCCAGAAAGAATTAACGAGAACGTTTTGAATGGCGAA
TCGACAAGAGTCTGCTTAATCTGCCGCCCACCCTTGACCTACTTCCTCCC
TCAATCCACTTTTT
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protein sequence of NO16G02670.2

>NO16G02670.2-protein ID=NO16G02670.2-protein|Name=NO16G02670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MLIHSPLAPYFPKQARPHLTMATLRLLTLCAIVSTALAFVAMGPPSRHTA
AATTRPTFTAWGSRGHTSSVKSLGAGRGLCMAMERTYIMAKPDAVQRGII
SDIVGRFEKKGYKLVALKLVKPPRSLLEEHYESLKDKPFFPKLMEYMTSG
PVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGREDGCMDE
RRWRTQAGMSCDWVKLLPSDRTAFEKRRLLLTRTHTSNKHTRL*
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mRNA from alignment at chr16:770631..772803-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02670.2 ID=NO16G02670.2|Name=NO16G02670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp|location=Sequence derived from alignment at chr16:770631..772803- (Nannochloropsis oceanica)
CTTGGCGTCGTTTCTTACTAAAGTGCATGCACGGCCAACTCGACCCACCC
CGATTCGCTCCCACATTTTGATATTGCAATACATTTTCCCGGGGTTTGCC
AGCAAAACCCACGCGGACATCCCTTGACGGAGCACGTACAACAATTCTCG
GGTAACCTCCTACCGCACGTAGGCAGCCCTCTTCACGCTTGGGCAGAGAA
GAGGCACCTACTACCTTCTTGACAGAGATGTACACAGGAAGACTATACAC
ACTGTCCATGCTGCAATTGTCAGAGAAGGCATGAATCGATCTGTTGTTTT
TAATGCGCGCAGTCCGGAACGCACACACCTCTCTCGGCGAGCCACACATA
TCTATCCCTAGCCTCACATTCCGACACAACCACACTACATGTGTGCACTG
ACCTTCCGTAGATGTGGATTCGTATATTGTCGTCATGGGGCATTTGATTG
CACTTCTGAGTCCTTTTGTCGAGTCTTTTTGGCGTCGTGGCGAACTGCAA
CTTTACAAACAAGGTGACGCGCACGATGCTGATTCACTCTCCTCTTGCAC
CATATTTCCCCAAACAGGCACGCCCCCATTTAACCATGGCGACCCTCCGT
TTGCTTACACTCTGCGCCATTGTTTCCACTGCCTTGGCCTTCGTGGCCAT
GGGTCCTCCCTCCCGCCACACCGCGGCTGCCACCACCCGCCCTACGTTCA
CAGCATGGGGCTCCCGGGGGCACACTAGCTCAGTCAAGTCTTTGGGTGCA
GGTACGGAGCACTTGCGGAAGATGATTGAGCTCGAGTGTATGCATATGTT
TGTTAGTTTCAGTATACCACCTACGTACTTCCTTGTCATCGGCATGGGCT
ATGCTGCTGGCGGGCTTGGACTTATGCTGGAAGCTGCTGAGGTTGACGCG
TGCGTCATCACACCATCCCCTCCTCCGTTCCTCCCTGAATATACTCTTGT
CGACTCTAATTCTTGTAAGAAGCAAGATGAAGATCAGGGAATAGAAAATA
AGCACTGCCATTCTGCATTGCCCAAATCTTATTTCTTCTCTCCCACTTTC
CATCTCTTCTTCCCTCCCCCCCCAGGCCGCGGCCTGTGCATGGCGATGGA
GCGCACCTACATCATGGCCAAGCCCGACGCCGTTCAACGTGGCATCATCT
CTGACATTGTTGGGCGGTTTGAGAAAAAGGGGTACAAGCTCGTGGCGCTG
AAATTGGTGAAGCCCCCCCGCTCCCTGTTGGAGGAGCACTACGAGTCATT
GAAGGTGAGAAGGAAAAGAAAGAGGGAGAGAAGGAGAGAAAGAGGAAATC
AAGCTTAAAGTTAAATTATCAGCGGCCAAGTACTTACGATTGTAACGGTA
CATGAAATTCCTGGTGAAAAGAGAGCAAAGATTCTCACAACGCACGCTTC
CACCCCCTCCCTCCCTCCCTCCCTTTCTCCCTCGCCCAGGACAAGCCCTT
CTTTCCCAAGTTAATGGAGTACATGACGAGCGGGCCCGTGGTGGCGATGG
TGTGGGAGGGTAAGAACGTGGTGGCTACCGGGCGAACGATGCTTGGGGCG
ACCAACCCCCTGGAAAGCGCGCCGGGCACGATCCGCGGAGACTTCTCCAT
CGAGGTAGGGAGGGAGGATGGGTGTATGGATGAAAGAAGGTGGAGGACAC
AAGCCGGCATGTCATGCGATTGGGTCAAGCTGCTCCCGTCGGACAGGACG
GCTTTTGAAAAGCGACGTCTCTTACTGACACGTACACACACAAGCAACAA
GCACACACGCCTATGACATACCATCCCCCTTGCCCCCCTTCCTTCCTCCC
TCCCCTCCTGCAGGTGGGCCGCAACATCTGCCACGGCTCGGACACGGTCG
AGAATGCGGAGCGTGAGATTAAGCTGTGGTTTGGTGAGGGGACTATCGAC
TGGGCCAGCCACAGCCAGGATTGGATTTACGAGTAACGGGAAAAGAGGAG
AGGGAGTGAGGGAGGGAGTGAGGGAGGGAGGGAGGAAGGGAGGGGAGGAA
GACAGGTTGTGGTGCCCACACGCGTCACATACTATGCGATGTGTGTTATG
GAACTTGAAATGGCAATTTTCACCCAGAAAGAATTAACGAGAACGTTTTG
AATGGCGAATCGACAAGAGTCTGCTTAATCTGCCGCCCACCCTTGACCTA
CTTCCTCCCTCAATCCACTTTTT
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Coding sequence (CDS) from alignment at chr16:770631..772803-

>NO16G02670.2 ID=NO16G02670.2|Name=NO16G02670.2|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr16:770631..772803- (Nannochloropsis oceanica)
ATGCTGATTCACTCTCCTCTTGCACCATATTTCCCCAAACAGGCACGCCC
CCATTTAACCATGGCGACCCTCCGTTTGCTTACACTCTGCGCCATTGTTT
CCACTGCCTTGGCCTTCGTGGCCATGGGTCCTCCCTCCCGCCACACCGCG
GCTGCCACCACCCGCCCTACGTTCACAGCATGGGGCTCCCGGGGGCACAC
TAGCTCAGTCAAGTCTTTGGGTGCAGGCCGCGGCCTGTGCATGGCGATGG
AGCGCACCTACATCATGGCCAAGCCCGACGCCGTTCAACGTGGCATCATC
TCTGACATTGTTGGGCGGTTTGAGAAAAAGGGGTACAAGCTCGTGGCGCT
GAAATTGGTGAAGCCCCCCCGCTCCCTGTTGGAGGAGCACTACGAGTCAT
TGAAGGACAAGCCCTTCTTTCCCAAGTTAATGGAGTACATGACGAGCGGG
CCCGTGGTGGCGATGGTGTGGGAGGGTAAGAACGTGGTGGCTACCGGGCG
AACGATGCTTGGGGCGACCAACCCCCTGGAAAGCGCGCCGGGCACGATCC
GCGGAGACTTCTCCATCGAGGTAGGGAGGGAGGATGGGTGTATGGATGAA
AGAAGGTGGAGGACACAAGCCGGCATGTCATGCGATTGGGTCAAGCTGCT
CCCGTCGGACAGGACGGCTTTTGAAAAGCGACGTCTCTTACTGACACGTA
CACACACAAGCAACAAGCACACACGCCTATGA
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Synonyms
Publications