NO16G02590.2, NO16G02590.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02590.2
Unique NameNO16G02590.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1947
Alignment locationchr16:748756..751538 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:748756..751538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02590.2 vs.
Match: GBG25187.1 (1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneamino imidazole-4-carboxamide isomerase [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 298.1 bits (762), Expect = 2.500e-77
Identity = 147/240 (61.25%), Postives = 187/240 (77.92%), Query Frame = 0 
Query:    1 MVFRPCIDLHAGKVKQIVGSSLTGNDAALV--TNFEAKMSAEDFAKMYQSDDLKGGHVIMLGDGCEEAALAALRAYPGGLQIGGGVTPESAQRYVDAGASHVIVTSYLFSGKELDFEKLKKMEGVVGKEKLVVDLSCRRKAEDGPEGPYYVVKDKWQTYTDFQINRENLAKLSKHCDEFLVHGVDVEGLKVGILEDLVVLLGDISPLPVTYAGGARSIEDLQRVTELGRGKVRTCTSSSV 239
            M FRPCIDLH G VKQIVG +LT +DA     TNF +  SA +FA +YQ D L+GGHVIMLG G EEAAL AL A+P G+ +GGGVTPE+AQ+Y+DAGASHVIVTSY+F    +DF+KL ++E  VGKE+LV+DLSCRR++ +G    Y+VV D+WQ +TD++I +ENL  L++HC EFLVHGVDVEGL+VGI+ +LV +LG  SP+PVTYAGGARS+EDL+ V  LGRG+V     S++
Sbjct:    1 MKFRPCIDLHEGCVKQIVGGTLT-DDAGKTPETNFTSDKSAGNFAALYQEDGLQGGHVIMLGKGNEEAALEALGAFPDGMHVGGGVTPENAQKYLDAGASHVIVTSYVFRDGTIDFDKLHELESAVGKERLVLDLSCRRRSNEGESPRYFVVTDRWQKFTDYEITQENLETLAQHCSEFLVHGVDVEGLRVGIIGELVEMLGRWSPIPVTYAGGARSVEDLELVKLLGRGRVDLTIGSAL 239
The following BLAST results are available for this feature:
BLAST of NO16G02590.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GBG25187.12.500e-7761.251-5-phosphoribosyl-5-5-phosphoribosylaminomethylid... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02590NO16G02590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02590.2NO16G02590.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02590.2.cds1NO16G02590.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02590.2.cds2NO16G02590.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02590.2.cds3NO16G02590.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02590.2.cds4NO16G02590.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02590.2.cds5NO16G02590.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02590.2 ID=NO16G02590.2|Name=NO16G02590.2|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp
AGGAGAGGAGGATGGCAAGGAGGTGGAAGAGGAAGTCGAGTAGGAGAGGA
TGTGCTGCATTAGCAAGTCTTCCTTCCTGGCGTCTGTCCATGTGGGTGAT
GTGGTTGTTTTGGGTACGTGCCACGGAAAGAGAGGGAGATAGGAGGGAGG
GCGCGGGATCGAGGATGGGGCGGCCGAGAGATGTATATACTCCAAAGCTC
TATGCGAATACACACACAAGTGAGTAGAAGCAAAATCTGTCGTTGAGAAA
GGAGCCTGGGCATCGTACAGGAATGTATAAAGTTACCTTGGGTCTTGGGT
TCCATGTTTGCTGGGTGGGCTGGTCCTACAGGCTTTGGCGTCAGTACAGG
ACCAGCTACTCCTGGGCGTCAATGTAGCGATATCGATCGATATGGCGTGT
GGCTATGCGGCCTGTCATGAGTTAATGTGCAAGTTAGCAGCATAGAAAGG
AGGCGAAATGTCGAGGGTGATAAATTTGCTGTCGTGAAAGCGAGTACATC
ACCCATAATTTCCAGGCGTGGTTCCCGTGAGGGTTCTCTGTGAATTCACA
GCTACCCATCTACCACCACGACCTATACACGCCCTGCTATCACAGAGAAA
CCACGTGCTCGCATCCATACCATTGTATTCCTGCTTTGGGCCTCAACAAG
CGTCCCCGACATTGAAACCTCCTCCCTCTCTTCTCCCTCCGCGCTGCACC
CGCGTGTCTCCGTCCTCTCATTGCATTCCCTTCCTCCACTCCACCTTTCA
ACGACAGGGCCCGTGCTTATCCTCATCCTGTCATCCTTGCCATCTTCTCC
ACGTTCAAACCCCCCCCCCCCCCGGCTCTCAGAATGGTTTTCCGTCCCTG
TATCGACCTGCACGCCGGCAAAGTGAAGCAAATCGTGGGCTCGTCTTTGA
CAGGGAATGACGCTGCACTCGTGACCAATTTCGAGGCCAAGATGAGTGCC
GAGGATTTTGCCAAAATGTACCAATCCGACGACCTCAAAGGGGGGCACGT
CATCATGCTGGGCGATGGCTGTGAAGAGGCCGCTCTTGCCGCCTTGCGTG
CGTACCCGGGGGGTTTGCAGATAGGGGGCGGAGTGACGCCGGAGAGCGCA
CAGAGATACGTAGACGCTGGCGCGAGCCATGTGATTGTGACGTCTTATTT
ATTCTCGGGCAAGGAGTTGGATTTTGAGAAATTAAAGAAGATGGAGGGGG
TAGTGGGGAAGGAGAAGCTGGTGGTGGATCTAAGCTGTCGGCGGAAAGCG
GAGGACGGCCCAGAGGGGCCCTACTACGTGGTGAAGGACAAGTGGCAAAC
GTACACGGACTTTCAAATTAACCGAGAGAACCTGGCGAAGCTCTCTAAGC
ACTGCGACGAGTTCCTGGTGCACGGCGTGGACGTGGAGGGCCTGAAAGTG
GGGATACTGGAGGACCTCGTGGTCCTTCTCGGGGACATCAGCCCCTTGCC
AGTCACCTACGCAGGCGGCGCCCGGTCGATCGAAGACTTGCAGCGCGTGA
CAGAGCTCGGGAGAGGCAAGGTACGCACGTGCACTTCGTCTTCAGTCGTT
TTCCTGATTGTGAAGGTGTACATGCTACTTAAAGAAAAGCAATAAGTATA
ATAGATGTATTGTTGTGTACATGAATACTTTCCGCAGGCGATGTAAGTCA
CGATCAACAAAACAATCAAAAACATGAGAAGAGAATTTAACGATATATAC
ATCGAAATAGGTGGACCTGACAATCGGCAGTGCCTTAGACATCTTTGGTG
GTGCCTTGAGCTACTCGGATGTGGTCGAGTGGGACAAACGCAATGGCTAC
ATTTAAATCCCGAAAAAGTGGAAAGCGAGTAAGGGAAGTAGGGAGGACAG
GAGGGTTAGGGGGTTGCTGTAGAATATGCGGCAAATGAGTATGAGTTAAT
AAAACCAAAGCAACTGTGTTAATGCGTCTTGGATGTCATTACTAAAC
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protein sequence of NO16G02590.2

>NO16G02590.2-protein ID=NO16G02590.2-protein|Name=NO16G02590.2|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MVFRPCIDLHAGKVKQIVGSSLTGNDAALVTNFEAKMSAEDFAKMYQSDD
LKGGHVIMLGDGCEEAALAALRAYPGGLQIGGGVTPESAQRYVDAGASHV
IVTSYLFSGKELDFEKLKKMEGVVGKEKLVVDLSCRRKAEDGPEGPYYVV
KDKWQTYTDFQINRENLAKLSKHCDEFLVHGVDVEGLKVGILEDLVVLLG
DISPLPVTYAGGARSIEDLQRVTELGRGKVRTCTSSSVVFLIVKVYMLLK
EKQ*
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mRNA from alignment at chr16:748756..751538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02590.2 ID=NO16G02590.2|Name=NO16G02590.2|organism=Nannochloropsis oceanica|type=mRNA|length=2783bp|location=Sequence derived from alignment at chr16:748756..751538- (Nannochloropsis oceanica)
AGGAGAGGAGGATGGCAAGGAGGTGGAAGAGGAAGTCGAGTAGGAGAGGA
TGTGCTGCATTAGCAAGTCTTCCTTCCTGGCGTCTGTCCATGTGGGTGAT
GTGGTTGTTTTGGGTACGTGCCACGGAAAGAGAGGGAGATAGGAGGGAGG
GCGCGGGATCGAGGATGGGGCGGCCGAGAGATGTATATACTCCAAAGCTC
TATGCGAATACACACACAAGTGAGTAGAAGCAAAATCTGTCGTTGAGAAA
GGAGCCTGGGCATCGTACAGGAATGTATAAAGTTACCTTGGGTCTTGGGT
TCCATGTTTGCTGGGTGGGCTGGTCCTACAGGCTTTGGCGTCAGTACAGG
ACCAGCTACTCCTGGGCGTCAATGTAGCGATATCGATCGATATGGCGTGT
GGCTATGCGGCCTGTCATGAGTTAATGTGCAAGTTAGCAGCATAGAAAGG
AGGCGAAATGTCGAGGGTGATAAATTTGCTGTCGTGAAAGCGAGTACATC
ACCCATAATTTCCAGGCGTGGTTCCCGTGAGGGTTCTCTGTGAATTCACA
GCTACCCATCTACCACCACGACCTATACACGCCCTGCTATCACAGAGAAA
CCACGTGCTCGCATCCATACCATTGTATTCCTGCTTTGGGCCTCAACAAG
CGTCCCCGACATTGAAACCTCCTCCCTCTCTTCTCCCTCCGCGCTGCACC
CGCGTGTCTCCGTCCTCTCATTGCATTCCCTTCCTCCACTCCACCTTTCA
ACGACAGGGCCCGTGCTTATCCTCATCCTGTCATCCTTGCCATCTTCTCC
ACGTTCAAACCCCCCCCCCCCCCGGCTCTCAGAATGGTTTTCCGTCCCTG
TATCGACCTGCACGCCGGCAAAGTGAAGCAAATCGTGGGCTCGTCTTTGA
CAGGGAATGACGCTGCACTCGTGACCAATTTCGAGGCCAAGATGAGTGCC
GAGGATTTTGCCAAGTAAGAAGGAAGGAGGTTTTGAAGGGACGGGAGGGA
TGCAGGGAGGGAGACAGGCGAAAAAGGTAGCGTGCTTGGTCCCTGACAGA
GTTCGATGCGACTTGAGGTAGTTAAGTGTATTGTACAACAAAACTTGGCG
TTGCTCATGCTAAGTTAAGGGCACCAGAAGGGACCTAAGAAACTCATCTT
CATTGCTCTTTCCCTCTTTACTTACACACTCTCCCTCCCTCTCTTTCACA
TACACTCTCTCTCTCCCTCCTTTCCTCTTACTCCCTCCTCCTCGCTCAGA
ATGTACCAATCCGACGACCTCAAAGGGGGGCACGTCATCATGCTGGGCGA
TGGCTGTGAAGAGGCCGCTCTTGCCGCCTTGCGTGCGTACCCGGGGGGTT
TGCAGATAGGGGGCGGAGTGACGCCGGAGAGCGCACAGAGATACGTAGAC
GCTGGCGCGAGCCATGTGATTGTGACGTCTTATTTATTCTCGGGCAAGGA
GTTGGATTTTGAGAAATTAAAGAAGATGGAGGGGGTAGTGGGGAAGGAGA
AGCTGGTACGTAGAAGCATGGAGGGACGATAAAGAGGAGGAGGACGGAAG
CTTACACACACGTCTTCTCTCGTACCATGTCCTCTTTTCTCTTTCATTTT
TTTTCCCCTTTTCCCTTCACACTCATGATTTGCCGGGACTGACCGTCCAG
GTGGTGGATCTAAGCTGTCGGCGGAAAGCGGAGGACGGCCCAGAGGGGCC
CTACTACGTGGTGAAGGACAAGTGGCAAACGTACACGGACTTTCAAATTA
AGTGAGCAAAGAGGGTGGGACGGAGGGAGGGGGGGAGGGGGGAAGGAAGA
AACGAGCCACATGGACGCCCATCGCCGGATCACTCTCTCCCTGCAAACCC
CCCTTCCTCCATTTTTGTGCCATGAAATCCTGCCCGAACTACCTTTGGGG
GCACAGACGTAAGTGAGAGGCACTTACCCTCTCCCTGCCTCCCTCACTCC
CTGCCTCCCTCAGCCGAGAGAACCTGGCGAAGCTCTCTAAGCACTGCGAC
GAGTTCCTGGTGCACGGCGTGGACGTGGAGGGCCTGAAAGTGGGGATACT
GGTGCGTGGCTGTAGACTACTAGCTGTCTCGTAGTGAGAGAAGACTGGCA
GACGGGGGCTGGGATTGCACCAGCTGTTGCCACTTTCCTTCCTTTCTGTT
TTTGATGAATGAATGAGTTGATTTTCCCTTCATTTCTGAAGATTAACCAT
TCCACTCCTTTTGTTTCTCCCCTCCCTCCCAACGTGTCGCAACAGGAGGA
CCTCGTGGTCCTTCTCGGGGACATCAGCCCCTTGCCAGTCACCTACGCAG
GCGGCGCCCGGTCGATCGAAGACTTGCAGCGCGTGACAGAGCTCGGGAGA
GGCAAGGTACGCACGTGCACTTCGTCTTCAGTCGTTTTCCTGATTGTGAA
GGTGTACATGCTACTTAAAGAAAAGCAATAAGTATAATAGATGTATTGTT
GTGTACATGAATACTTTCCGCAGGCGATGTAAGTCACGATCAACAAAACA
ATCAAAAACATGAGAAGAGAATTTAACGATATATACATCGAAATAGGTGG
ACCTGACAATCGGCAGTGCCTTAGACATCTTTGGTGGTGCCTTGAGCTAC
TCGGATGTGGTCGAGTGGGACAAACGCAATGGCTACATTTAAATCCCGAA
AAAGTGGAAAGCGAGTAAGGGAAGTAGGGAGGACAGGAGGGTTAGGGGGT
TGCTGTAGAATATGCGGCAAATGAGTATGAGTTAATAAAACCAAAGCAAC
TGTGTTAATGCGTCTTGGATGTCATTACTAAAC
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Coding sequence (CDS) from alignment at chr16:748756..751538-

>NO16G02590.2 ID=NO16G02590.2|Name=NO16G02590.2|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr16:748756..751538- (Nannochloropsis oceanica)
ATGGTTTTCCGTCCCTGTATCGACCTGCACGCCGGCAAAGTGAAGCAAAT
CGTGGGCTCGTCTTTGACAGGGAATGACGCTGCACTCGTGACCAATTTCG
AGGCCAAGATGAGTGCCGAGGATTTTGCCAAAATGTACCAATCCGACGAC
CTCAAAGGGGGGCACGTCATCATGCTGGGCGATGGCTGTGAAGAGGCCGC
TCTTGCCGCCTTGCGTGCGTACCCGGGGGGTTTGCAGATAGGGGGCGGAG
TGACGCCGGAGAGCGCACAGAGATACGTAGACGCTGGCGCGAGCCATGTG
ATTGTGACGTCTTATTTATTCTCGGGCAAGGAGTTGGATTTTGAGAAATT
AAAGAAGATGGAGGGGGTAGTGGGGAAGGAGAAGCTGGTGGTGGATCTAA
GCTGTCGGCGGAAAGCGGAGGACGGCCCAGAGGGGCCCTACTACGTGGTG
AAGGACAAGTGGCAAACGTACACGGACTTTCAAATTAACCGAGAGAACCT
GGCGAAGCTCTCTAAGCACTGCGACGAGTTCCTGGTGCACGGCGTGGACG
TGGAGGGCCTGAAAGTGGGGATACTGGAGGACCTCGTGGTCCTTCTCGGG
GACATCAGCCCCTTGCCAGTCACCTACGCAGGCGGCGCCCGGTCGATCGA
AGACTTGCAGCGCGTGACAGAGCTCGGGAGAGGCAAGGTACGCACGTGCA
CTTCGTCTTCAGTCGTTTTCCTGATTGTGAAGGTGTACATGCTACTTAAA
GAAAAGCAATAA
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Synonyms
Publications