NO16G02390.4, NO16G02390.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02390.4
Unique NameNO16G02390.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2353
Alignment locationchr16:687328..689802 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:687328..689802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02390.4 vs.
Match: EWM23920.1 (auxin efflux carrier-like protein [Nannochloropsis gaditana])

HSP 1 Score: 515.8 bits (1327), Expect = 1.200e-142
Identity = 269/351 (76.64%), Postives = 308/351 (87.75%), Query Frame = 0 
Query:   26 QQHPSLLDVRGGAMVTLDPVVVKASMTAVGELLIACSIGAFFTRRGILDRNAIASLSSIVYHILLPSLLVVNVAKTVYATPLLTLLPLPLFGTMQIILCSCIAWVVTWLLGVDVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGYNLLVDSPPLSPESVDERAAITSLADKAKYLFKNPPPVLKRVASPPIIGSVGGLLLGISPLAKLFLGPAAPLGMLTNAIQTIGSAYTSMGLLVLAGSLALPLPALSAAEKVAEAGEVVRVSKGKAIPIWRQIASVCLVRFCLCPALCLSIILRSMSTGFIKLDRLMVFVLFLQSCMP 377
            +Q  +LL VRGG++  LDPVVVKAS+TAVGELL+AC IGA+FTRRGIL R AIA+LSSIVYHILLPSLLVVNVAKTVY TPL TLLPLPLFGTMQI+LCSCIAWVVT+L+G DVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGY+LLV +   + +S+ E+ ++ +LAD+ KY  ++PP  +KR+ SPPI+GS+GGL +G+SPLAKLFLGP APLG+LTNA+QTIGSAYTSMGLLVLAGSLALPLP  S  E+V+ A       + K+I  + QIASVCLVRFCLCPALCLSIILR+MSTG++KLDRLMVFVLFLQSCMP
Sbjct:   91 EQSSALLSVRGGSVANLDPVVVKASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVAKTVYTTPLRTLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGYSLLVPAEAPTAQSIAEKESVVTLADRIKYFIRHPPATIKRILSPPIVGSLGGLCVGVSPLAKLFLGPRAPLGILTNAVQTIGSAYTSMGLLVLAGSLALPLPTPSPLEEVSGA-------ESKSIHPYLQIASVCLVRFCLCPALCLSIILRAMSTGWVKLDRLMVFVLFLQSCMP 434
The following BLAST results are available for this feature:
BLAST of NO16G02390.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23920.11.200e-14276.64auxin efflux carrier-like protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02390NO16G02390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02390.4NO16G02390.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02390.4.cds1NO16G02390.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02390.4.cds2NO16G02390.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02390.4 ID=NO16G02390.4|Name=NO16G02390.4|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp
TAAATCTCTTCATTAAGCTATTTTTTACTTTGTCCTTGCCTTGTACCGGA
AGACCGTAGAGGTCCATCGAGGCCCATGTGCACGCGGGCTGAAGTCAGCG
ACTGCAGCGGATTGCAGCACGTGGTAGGTGGTAGGGTCGAGTTCTATAAA
GAAGTATCCCACCCAACCCCTCTCGAGGCGCTATTGCTCCACACTTGCCT
GAATTTGGCTTCTTACCATCAAGCCCGGAATATCCAATCCTTTCTCGCAA
AAGTGTCAGCAGCCAGCCAGGACCAAGGAGTATCACGTCTAGAAGGCACG
CTACTCGGACCCTCACGACCTCATCATGGCCTTTGCACTGGGACTATTTA
TGCTGCTCATGGTGCCTGGATCGTCCATCGCTAGACTGCGTACGACAGGG
AGCATGGTACGTGGTGCAGTGTGCTTATGGCGGGTGGGAGGTTACTTATG
AGCCCATGGGATGAGATATTCTACACGGTACGGCATCGGCTTGCTCAGGT
GCGAGTCATATAAACTCTTCCCTAGGGTATAACATGTCCTCACTCAACTT
CTTTTCCTTAAGCCGGCATATCGGCAGAGGAGATGCACTCCTCGACACAT
CTCGTCAATCACGGGCTTTGTCTCTTCATCCCGACCTTGGCAAGCAGTCA
GCTCATCCTCAGCCGGAGTGCGTGATTGTTTTCGGGCTGCAGCGACTGCA
CCTGCAGGAGACCTTTTGATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCG
GCACCGCCACATTCAACACAACCATGAGCAACCCTCTACGCAGCAGCAAC
ACCCTTCTCTGCTCGATGTCCGCGGTGGTGCCATGGTGACCCTGGATCCC
GTAGTTGTGAAAGCTTCCATGACAGCTGTGGGTGAGCTTTTGATTGCTTG
TAGCATTGGTGCTTTTTTCACCCGCCGGGGTATCTTGGATCGAAATGCCA
TTGCCAGCTTGAGCTCAATCGTATACCACATCCTCCTACCGTCTCTTCTT
GTTGTAAATGTTGCCAAGACAGTCTATGCCACTCCCCTGCTCACGTTGCT
CCCACTTCCCCTGTTCGGTACGATGCAAATCATCCTCTGCAGCTGCATTG
CCTGGGTCGTCACTTGGTTGCTGGGCGTGGATGTGAACAGTGCAAAAGGT
CGCCAACTGCGCGTGCTCCAGACCTTTGGCAACGGTGGCGTGGCTCCCAT
TCTGTTCGCTACCGTCCTGCTTCGAAATCACCCCGACCCGAGCGTGCTAC
CACTCGCCATTTCCTACATTAGTTTCTATCTTCTGGGATGGACGCCTATC
TTTTGGACGTATGGGTATAATCTTCTAGTTGATTCCCCACCGCTATCTCC
TGAGTCCGTCGACGAGAGGGCAGCTATCACAAGCCTGGCGGACAAAGCCA
AGTACCTTTTCAAGAACCCGCCCCCTGTGCTCAAGCGCGTTGCCTCCCCA
CCCATCATCGGAAGCGTCGGGGGATTGCTGCTGGGCATCAGTCCATTGGC
CAAGCTTTTTTTGGGGCCCGCAGCTCCACTTGGGATGCTTACGAACGCAA
TTCAAACTATTGGCTCAGCCTACACAAGCATGGGTCTCCTGGTGCTGGCC
GGTAGCCTCGCCTTGCCCCTCCCAGCTCTCTCCGCTGCAGAGAAAGTCGC
CGAAGCTGGCGAGGTCGTGAGGGTCTCGAAAGGCAAGGCCATCCCGATAT
GGCGTCAGATTGCCAGTGTGTGCCTCGTGCGATTCTGTCTGTGTCCTGCG
CTCTGCCTTTCCATCATTTTGCGGTCCATGTCTACAGGGTTCATCAAACT
GGATCGGCTCATGGTGTTCGTGCTATTCTTACAGAGCTGCATGCCGAGGT
AAGCTCCCTCTGTCCCTCCGTCGCTCTCTTTCTCCATTCTTCTACTCTAT
CCCTCCTTCCTCGTCCCCGCTCTTTCACATTCCAGCGCACCACCTCTCTT
TGTTACTGCAGTTTTCCTTCTGCCAACTTACATTCCTCGCTTTCTTTTTT
CTAGCGCACAAAACAGCGTGCTTATGGTGCAGCTCAGCGGTCGCACTGCG
GACGCCACCAAGCTAGCACGCATGCTCCTCTTTATATATTCCCTTTCTTG
CATTCCCATTTCCATCCTGTTGACGTTGTTTTTGCAGAAATTCAGTCTGT
AACTGTCCTGTTGTGACAGGTTGGTGACGCAGGTGGAAGTGGTTGGGAAA
GGGTACAAGCACGAGGTGTGAATTCTCGGCGACAAACAGAAATGTACTGA
AATAAAAAAGAAAAGAAAAATACGCATCAGTTGATAAGAACGCTATTTGC
AAAATATTGTGGACCGCTCATGCATGCTTCGGGACATTCGCGAAGAACAC
AAC
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protein sequence of NO16G02390.4

>NO16G02390.4-protein ID=NO16G02390.4-protein|Name=NO16G02390.4|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MESELWPLLRRHRHIQHNHEQPSTQQQHPSLLDVRGGAMVTLDPVVVKAS
MTAVGELLIACSIGAFFTRRGILDRNAIASLSSIVYHILLPSLLVVNVAK
TVYATPLLTLLPLPLFGTMQIILCSCIAWVVTWLLGVDVNSAKGRQLRVL
QTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGY
NLLVDSPPLSPESVDERAAITSLADKAKYLFKNPPPVLKRVASPPIIGSV
GGLLLGISPLAKLFLGPAAPLGMLTNAIQTIGSAYTSMGLLVLAGSLALP
LPALSAAEKVAEAGEVVRVSKGKAIPIWRQIASVCLVRFCLCPALCLSII
LRSMSTGFIKLDRLMVFVLFLQSCMPR*
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mRNA from alignment at chr16:687328..689802+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02390.4 ID=NO16G02390.4|Name=NO16G02390.4|organism=Nannochloropsis oceanica|type=mRNA|length=2475bp|location=Sequence derived from alignment at chr16:687328..689802+ (Nannochloropsis oceanica)
TAAATCTCTTCATTAAGCTATTTTTTACTTTGTCCTTGCCTTGTACCGGA
AGACCGTAGAGGTCCATCGAGGCCCATGTGCACGCGGGCTGAAGTCAGCG
ACTGCAGCGGATTGCAGCACGTGGTAGGTGGTAGGGTCGAGTTCTATAAA
GAAGTATCCCACCCAACCCCTCTCGAGGCGCTATTGCTCCACACTTGCCT
GAATTTGGCTTCTTACCATCAAGCCCGGAATATCCAATCCTTTCTCGCAA
AAGTGTCAGCAGCCAGCCAGGACCAAGGAGTATCACGTCTAGAAGGCACG
CTACTCGGACCCTCACGACCTCATCATGGCCTTTGCACTGGGACTATTTA
TGCTGCTCATGGTGCCTGGATCGTCCATCGCTAGACTGCGTACGACAGGG
AGCATGGTACGTGGTGCAGTGTGCTTATGGCGGGTGGGAGGTTACTTATG
AGCCCATGGGATGAGATATTCTACACGGTACGGCATCGGCTTGCTCAGGT
GCGAGTCATATAAACTCTTCCCTAGGGTATAACATGTCCTCACTCAACTT
CTTTTCCTTAAGCCGGCATATCGGCAGAGGAGATGCACTCCTCGACACAT
CTCGTCAATCACGGGCTTTGTCTCTTCATCCCGACCTTGGCAAGCAGTCA
GCTCATCCTCAGCCGGAGTGCGTGATTGTTTTCGGGCTGCAGCGACTGCA
CCTGCAGGAGACCTTTTGATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCG
GCACCGCCACATTCAACACAACCATGAGCAACCCTCTACGCAGCAGCAAC
ACCCTTCTCTGCTCGATGTCCGCGGTGGTGCCATGGTGACCCTGGATCCC
GTAGTTGTGAAAGCTTCCATGACAGCTGTGGGTGAGCTTTTGATTGCTTG
TAGCATTGGTGCTTTTTTCACCCGCCGGGGTATCTTGGATCGAAATGCCA
TTGCCAGCTTGAGCTCAATCGTATACCACATCCTCCTACCGTCTCTTCTT
GTTGTAAATGTTGCCAAGACAGTCTATGCCACTCCCCTGCTCACGTTGCT
CCCACTTCCCCTGTTCGGTACGATGCAAATCATCCTCTGCAGCTGCATTG
CCTGGGTCGTCACTTGGTTGCTGGGCGTGGATGTGAACAGGTGCGTAAAT
AGATATAATGCGGTCTGCAGCGTCCAAATTTCACTTTGTCCCTTCAATTC
GCCTCACTTAATGCTGCATTTTCATACACAACTATCGTTCACGTGCCATA
CAATACACACAGTGCAAAAGGTCGCCAACTGCGCGTGCTCCAGACCTTTG
GCAACGGTGGCGTGGCTCCCATTCTGTTCGCTACCGTCCTGCTTCGAAAT
CACCCCGACCCGAGCGTGCTACCACTCGCCATTTCCTACATTAGTTTCTA
TCTTCTGGGATGGACGCCTATCTTTTGGACGTATGGGTATAATCTTCTAG
TTGATTCCCCACCGCTATCTCCTGAGTCCGTCGACGAGAGGGCAGCTATC
ACAAGCCTGGCGGACAAAGCCAAGTACCTTTTCAAGAACCCGCCCCCTGT
GCTCAAGCGCGTTGCCTCCCCACCCATCATCGGAAGCGTCGGGGGATTGC
TGCTGGGCATCAGTCCATTGGCCAAGCTTTTTTTGGGGCCCGCAGCTCCA
CTTGGGATGCTTACGAACGCAATTCAAACTATTGGCTCAGCCTACACAAG
CATGGGTCTCCTGGTGCTGGCCGGTAGCCTCGCCTTGCCCCTCCCAGCTC
TCTCCGCTGCAGAGAAAGTCGCCGAAGCTGGCGAGGTCGTGAGGGTCTCG
AAAGGCAAGGCCATCCCGATATGGCGTCAGATTGCCAGTGTGTGCCTCGT
GCGATTCTGTCTGTGTCCTGCGCTCTGCCTTTCCATCATTTTGCGGTCCA
TGTCTACAGGGTTCATCAAACTGGATCGGCTCATGGTGTTCGTGCTATTC
TTACAGAGCTGCATGCCGAGGTAAGCTCCCTCTGTCCCTCCGTCGCTCTC
TTTCTCCATTCTTCTACTCTATCCCTCCTTCCTCGTCCCCGCTCTTTCAC
ATTCCAGCGCACCACCTCTCTTTGTTACTGCAGTTTTCCTTCTGCCAACT
TACATTCCTCGCTTTCTTTTTTCTAGCGCACAAAACAGCGTGCTTATGGT
GCAGCTCAGCGGTCGCACTGCGGACGCCACCAAGCTAGCACGCATGCTCC
TCTTTATATATTCCCTTTCTTGCATTCCCATTTCCATCCTGTTGACGTTG
TTTTTGCAGAAATTCAGTCTGTAACTGTCCTGTTGTGACAGGTTGGTGAC
GCAGGTGGAAGTGGTTGGGAAAGGGTACAAGCACGAGGTGTGAATTCTCG
GCGACAAACAGAAATGTACTGAAATAAAAAAGAAAAGAAAAATACGCATC
AGTTGATAAGAACGCTATTTGCAAAATATTGTGGACCGCTCATGCATGCT
TCGGGACATTCGCGAAGAACACAAC
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Coding sequence (CDS) from alignment at chr16:687328..689802+

>NO16G02390.4 ID=NO16G02390.4|Name=NO16G02390.4|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr16:687328..689802+ (Nannochloropsis oceanica)
ATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCGGCACCGCCACATTCAACA
CAACCATGAGCAACCCTCTACGCAGCAGCAACACCCTTCTCTGCTCGATG
TCCGCGGTGGTGCCATGGTGACCCTGGATCCCGTAGTTGTGAAAGCTTCC
ATGACAGCTGTGGGTGAGCTTTTGATTGCTTGTAGCATTGGTGCTTTTTT
CACCCGCCGGGGTATCTTGGATCGAAATGCCATTGCCAGCTTGAGCTCAA
TCGTATACCACATCCTCCTACCGTCTCTTCTTGTTGTAAATGTTGCCAAG
ACAGTCTATGCCACTCCCCTGCTCACGTTGCTCCCACTTCCCCTGTTCGG
TACGATGCAAATCATCCTCTGCAGCTGCATTGCCTGGGTCGTCACTTGGT
TGCTGGGCGTGGATGTGAACAGTGCAAAAGGTCGCCAACTGCGCGTGCTC
CAGACCTTTGGCAACGGTGGCGTGGCTCCCATTCTGTTCGCTACCGTCCT
GCTTCGAAATCACCCCGACCCGAGCGTGCTACCACTCGCCATTTCCTACA
TTAGTTTCTATCTTCTGGGATGGACGCCTATCTTTTGGACGTATGGGTAT
AATCTTCTAGTTGATTCCCCACCGCTATCTCCTGAGTCCGTCGACGAGAG
GGCAGCTATCACAAGCCTGGCGGACAAAGCCAAGTACCTTTTCAAGAACC
CGCCCCCTGTGCTCAAGCGCGTTGCCTCCCCACCCATCATCGGAAGCGTC
GGGGGATTGCTGCTGGGCATCAGTCCATTGGCCAAGCTTTTTTTGGGGCC
CGCAGCTCCACTTGGGATGCTTACGAACGCAATTCAAACTATTGGCTCAG
CCTACACAAGCATGGGTCTCCTGGTGCTGGCCGGTAGCCTCGCCTTGCCC
CTCCCAGCTCTCTCCGCTGCAGAGAAAGTCGCCGAAGCTGGCGAGGTCGT
GAGGGTCTCGAAAGGCAAGGCCATCCCGATATGGCGTCAGATTGCCAGTG
TGTGCCTCGTGCGATTCTGTCTGTGTCCTGCGCTCTGCCTTTCCATCATT
TTGCGGTCCATGTCTACAGGGTTCATCAAACTGGATCGGCTCATGGTGTT
CGTGCTATTCTTACAGAGCTGCATGCCGAGGTAA
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Synonyms
Publications