NO16G02250.1, NO16G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02250.1
Unique NameNO16G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1574
Alignment locationchr16:653942..655808 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:653942..655808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02250.1 vs.
Match: EWM23922.1 (dihydrodipicolinate synthase [Nannochloropsis gaditana])

HSP 1 Score: 521.2 bits (1341), Expect = 2.500e-144
Identity = 268/344 (77.91%), Postives = 298/344 (86.63%), Query Frame = 0 
Query:    1 MIRQVLVLALVAAYATTCSMGFVVPSLPVTAVTTSRRNMVVMKVE--GARMPIKRGSMVALVTPMKPDGAVDEGQLRTLLQWHVACQTDGVVVLGTTGEASTLSFEERARVLDITAEEIKGKIPIVVGTGTIDPRTVVKLTQQAVNHGADASLVVTPYYVKPTQKGLVSHFGYVAEAVDLPCLLYNVPGRTGSDIKPETAAEVAAKNPSVIGIKEATGDVSRVAAIRKVAGNKFLLYSGDDETGAEFVLKGGDGVISVTSNVVPDVMHQLMMAALAKDAALTEQLNKPLELLHQRLFLQSNPIPAKWALYRMGKIGAGIRPPMTVMEEEFHKPLEEALKAAGAI 343
            M R  LVLAL  A A T S  FV PSL   AV +SRR  + M      +RMPI++GSMVALVTPMKPDGAVDE QLR+LLQWHVACQTDG+VVLGTTGEASTLSF+ERARVLDITAEE+KGKIPIVVGTGTIDPR VVKLTQQA +HGADASLVVTPYYVKPTQKGL+SHFG+VAEAVDLPCLLYNVPGRTGSDIKPETAAEVA+K+  VIG+KEATGD++RVAAIR +AG  FLLYSGDDETGAEFVL+GGDGVISVTSN+VP+ MH LMMAAL KD    + +N PL+LLHQRLFLQ+NPIP KWALYRMG++G  IRPP+TV+EEEFH PLEEAL+AAG I
Sbjct:    1 MSRISLVLALTMALAATSSFAFVGPSLHAPAVRSSRRVRMTMNAVDISSRMPIEKGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGVI 344
The following BLAST results are available for this feature:
BLAST of NO16G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23922.12.500e-14477.91dihydrodipicolinate synthase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02250NO16G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02250.1NO16G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02250.1.cds1NO16G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02250.1.cds2NO16G02250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02250.1 ID=NO16G02250.1|Name=NO16G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1574bp
CGGAGCTTTCTTGAAAATACCGCAAAGCACCTTAATTAAGCCAGGCATAA
ATCGCTTTGCAGAAGAACGGAGTGGAAATAAGGCGCCCTTGACACTACCT
CAATCTCCCGCTGGAAAGGTCCACGGTCGTGCGTTGCTTGACAGGGAACG
CGGCAGGCCCATGCATCATCAACCCCTCTTGCCTCATCCACCACCACTAC
TTACTTCATCAGTCGTTCAGGCTTTCCGCCTTACAAGTCACCGCTGAAAA
CCCCATAACCACCATACCTCAAGGACAGGGAAGCCATCTGCTATACCTTA
CAAGCCAGTATGATTCGCCAAGTGCTAGTCCTGGCCCTGGTGGCGGCCTA
CGCCACGACATGTAGCATGGGTTTCGTGGTCCCCTCCCTCCCTGTCACAG
CTGTCACGACCTCCCGCCGCAACATGGTGGTGATGAAAGTTGAAGGCGCC
CGCATGCCTATCAAGAGAGGCAGCATGGTGGCGCTCGTAACGCCGATGAA
GCCGGACGGGGCCGTGGACGAGGGGCAGCTTCGGACTCTCTTACAATGGC
ACGTGGCTTGTCAGACGGACGGTGTGGTTGTGCTGGGCACGACTGGAGAG
GCTTCCACCTTGTCTTTCGAGGAGCGAGCGCGAGTGTTGGACATAACTGC
CGAGGAGATTAAGGGCAAGATTCCGATTGTGGTTGGCACGGGCACCATTG
ACCCCCGCACTGTCGTGAAGCTGACACAGCAGGCAGTGAATCATGGAGCC
GATGCCAGCTTGGTTGTGACGCCTTACTATGTCAAACCGACGCAAAAAGG
GCTAGTATCTCACTTCGGCTATGTCGCCGAAGCGGTCGACTTGCCCTGCC
TCCTGTACAACGTCCCAGGCCGGACGGGCTCGGACATCAAGCCTGAAACC
GCGGCAGAGGTGGCAGCGAAGAACCCGAGCGTGATCGGAATCAAGGAAGC
CACGGGAGATGTGTCGCGTGTGGCGGCCATTCGGAAGGTGGCGGGGAACA
AGTTTTTGCTTTACAGTGGTGATGATGAAACAGGGGCCGAATTTGTGCTG
AAAGGAGGTGATGGTGTCATCTCTGTGACCTCTAATGTTGTCCCCGATGT
GATGCACCAACTGATGATGGCGGCCCTCGCCAAAGACGCGGCGCTGACTG
AGCAGTTGAACAAGCCTCTTGAGCTGCTGCACCAACGCTTATTCCTCCAA
TCAAACCCCATCCCGGCCAAATGGGCTCTGTATCGCATGGGTAAGATTGG
TGCGGGGATTCGCCCACCTATGACGGTGATGGAAGAGGAGTTTCATAAAC
CCTTGGAAGAGGCATTAAAGGCGGCGGGAGCTATCTAAGTATAGAGGAGG
AGGCAGGGAGGGTGGAAGAGGAGGTGTCAGGGAGAGGGATGAGAGAGAGT
GGGAGAAGAGGAGGTAATACAAAAGCGAGCCGCCAAGTTTAGAAATCAAG
CAATCAACGATGCAAATGAAACGGAAACAGGAGCGTCACTTTCCTGCTTG
CGGATGGATGAACTCAGAGCCTGCCTCCCCTTAGCGTCGCGACACATTTC
GGGATGATTCCGATCCGCCGATTT
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protein sequence of NO16G02250.1

>NO16G02250.1-protein ID=NO16G02250.1-protein|Name=NO16G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MIRQVLVLALVAAYATTCSMGFVVPSLPVTAVTTSRRNMVVMKVEGARMP
IKRGSMVALVTPMKPDGAVDEGQLRTLLQWHVACQTDGVVVLGTTGEAST
LSFEERARVLDITAEEIKGKIPIVVGTGTIDPRTVVKLTQQAVNHGADAS
LVVTPYYVKPTQKGLVSHFGYVAEAVDLPCLLYNVPGRTGSDIKPETAAE
VAAKNPSVIGIKEATGDVSRVAAIRKVAGNKFLLYSGDDETGAEFVLKGG
DGVISVTSNVVPDVMHQLMMAALAKDAALTEQLNKPLELLHQRLFLQSNP
IPAKWALYRMGKIGAGIRPPMTVMEEEFHKPLEEALKAAGAI*
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mRNA from alignment at chr16:653942..655808+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02250.1 ID=NO16G02250.1|Name=NO16G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr16:653942..655808+ (Nannochloropsis oceanica)
CGGAGCTTTCTTGAAAATACCGCAAAGCACCTTAATTAAGCCAGGCATAA
ATCGCTTTGCAGAAGAACGGAGTGGAAATAAGGCGCCCTTGACACTACCT
CAATCTCCCGCTGGAAAGGTCCACGGTCGTGCGTTGCTTGACAGGGAACG
CGGCAGGCCCATGCATCATCAACCCCTCTTGCCTCATCCACCACCACTAC
TTACTTCATCAGTCGTTCAGGCTTTCCGCCTTACAAGTCACCGCTGAAAA
CCCCATAACCACCATACCTCAAGGACAGGGAAGCCATCTGCTATACCTTA
CAAGCCAGTATGATTCGCCAAGTGCTAGGTATGTGCATCTTTCACTCTCC
TTGTCTGCTTTCTGCCTCCAGCAAACAAGGGAACAAATGATGGCGGTCCG
CGCTGCAACACATGCACCGCTACTACAAGCAGCTAAAAAATCACACTCCC
ATCAGATCAGACTCTGAAAAACTCGGGCGTAGGTGCAGCCTTTTGGTCTC
TCCCCACTTCTGGGCTTGTTGCAAATTTTTAGCCTCATCGATATTCGATA
CTACCCTCGAACCTCTAATCGCCCTCCCCCAAGTCACGACTCTGCCCCTA
CCCCACCCCTACACTCAACAGTCCTGGCCCTGGTGGCGGCCTACGCCACG
ACATGTAGCATGGGTTTCGTGGTCCCCTCCCTCCCTGTCACAGCTGTCAC
GACCTCCCGCCGCAACATGGTGGTGATGAAAGTTGAAGGCGCCCGCATGC
CTATCAAGAGAGGCAGCATGGTGGCGCTCGTAACGCCGATGAAGCCGGAC
GGGGCCGTGGACGAGGGGCAGCTTCGGACTCTCTTACAATGGCACGTGGC
TTGTCAGACGGACGGTGTGGTTGTGCTGGGCACGACTGGAGAGGCTTCCA
CCTTGTCTTTCGAGGAGCGAGCGCGAGTGTTGGACATAACTGCCGAGGAG
ATTAAGGGCAAGATTCCGATTGTGGTTGGCACGGGCACCATTGACCCCCG
CACTGTCGTGAAGCTGACACAGCAGGCAGTGAATCATGGAGCCGATGCCA
GCTTGGTTGTGACGCCTTACTATGTCAAACCGACGCAAAAAGGGCTAGTA
TCTCACTTCGGCTATGTCGCCGAAGCGGTCGACTTGCCCTGCCTCCTGTA
CAACGTCCCAGGCCGGACGGGCTCGGACATCAAGCCTGAAACCGCGGCAG
AGGTGGCAGCGAAGAACCCGAGCGTGATCGGAATCAAGGAAGCCACGGGA
GATGTGTCGCGTGTGGCGGCCATTCGGAAGGTGGCGGGGAACAAGTTTTT
GCTTTACAGTGGTGATGATGAAACAGGGGCCGAATTTGTGCTGAAAGGAG
GTGATGGTGTCATCTCTGTGACCTCTAATGTTGTCCCCGATGTGATGCAC
CAACTGATGATGGCGGCCCTCGCCAAAGACGCGGCGCTGACTGAGCAGTT
GAACAAGCCTCTTGAGCTGCTGCACCAACGCTTATTCCTCCAATCAAACC
CCATCCCGGCCAAATGGGCTCTGTATCGCATGGGTAAGATTGGTGCGGGG
ATTCGCCCACCTATGACGGTGATGGAAGAGGAGTTTCATAAACCCTTGGA
AGAGGCATTAAAGGCGGCGGGAGCTATCTAAGTATAGAGGAGGAGGCAGG
GAGGGTGGAAGAGGAGGTGTCAGGGAGAGGGATGAGAGAGAGTGGGAGAA
GAGGAGGTAATACAAAAGCGAGCCGCCAAGTTTAGAAATCAAGCAATCAA
CGATGCAAATGAAACGGAAACAGGAGCGTCACTTTCCTGCTTGCGGATGG
ATGAACTCAGAGCCTGCCTCCCCTTAGCGTCGCGACACATTTCGGGATGA
TTCCGATCCGCCGATTT
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Coding sequence (CDS) from alignment at chr16:653942..655808+

>NO16G02250.1 ID=NO16G02250.1|Name=NO16G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr16:653942..655808+ (Nannochloropsis oceanica)
ATGATTCGCCAAGTGCTAGTCCTGGCCCTGGTGGCGGCCTACGCCACGAC
ATGTAGCATGGGTTTCGTGGTCCCCTCCCTCCCTGTCACAGCTGTCACGA
CCTCCCGCCGCAACATGGTGGTGATGAAAGTTGAAGGCGCCCGCATGCCT
ATCAAGAGAGGCAGCATGGTGGCGCTCGTAACGCCGATGAAGCCGGACGG
GGCCGTGGACGAGGGGCAGCTTCGGACTCTCTTACAATGGCACGTGGCTT
GTCAGACGGACGGTGTGGTTGTGCTGGGCACGACTGGAGAGGCTTCCACC
TTGTCTTTCGAGGAGCGAGCGCGAGTGTTGGACATAACTGCCGAGGAGAT
TAAGGGCAAGATTCCGATTGTGGTTGGCACGGGCACCATTGACCCCCGCA
CTGTCGTGAAGCTGACACAGCAGGCAGTGAATCATGGAGCCGATGCCAGC
TTGGTTGTGACGCCTTACTATGTCAAACCGACGCAAAAAGGGCTAGTATC
TCACTTCGGCTATGTCGCCGAAGCGGTCGACTTGCCCTGCCTCCTGTACA
ACGTCCCAGGCCGGACGGGCTCGGACATCAAGCCTGAAACCGCGGCAGAG
GTGGCAGCGAAGAACCCGAGCGTGATCGGAATCAAGGAAGCCACGGGAGA
TGTGTCGCGTGTGGCGGCCATTCGGAAGGTGGCGGGGAACAAGTTTTTGC
TTTACAGTGGTGATGATGAAACAGGGGCCGAATTTGTGCTGAAAGGAGGT
GATGGTGTCATCTCTGTGACCTCTAATGTTGTCCCCGATGTGATGCACCA
ACTGATGATGGCGGCCCTCGCCAAAGACGCGGCGCTGACTGAGCAGTTGA
ACAAGCCTCTTGAGCTGCTGCACCAACGCTTATTCCTCCAATCAAACCCC
ATCCCGGCCAAATGGGCTCTGTATCGCATGGGTAAGATTGGTGCGGGGAT
TCGCCCACCTATGACGGTGATGGAAGAGGAGTTTCATAAACCCTTGGAAG
AGGCATTAAAGGCGGCGGGAGCTATCTAA
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Synonyms
Publications