NO16G02140.1, NO16G02140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02140.1
Unique NameNO16G02140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length453
Alignment locationchr16:624536..625335 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:624536..625335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02140.1 vs.
Match: EWM23902.1 (mago nashi [Nannochloropsis gaditana])

HSP 1 Score: 282.3 bits (721), Expect = 8.600e-73
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 0 
Query:    1 MSSGDDFYLRYYVGHTGKFGHEFMEFEIQPSGQLRYANNSNYKNAKMIRKQVYVSQTVLDEFRRIVEESQVVAEDDKDWPEPDRVGKQELEVRMGDDHIRFTCSKIGSLLDVQDSKDPEGLRIFYYLVQDLRCLLFSLIGLHFKIKPIPT 151
            M+ GD FYLRYYVGH GKFGHEFMEFEI PSG LRYANNS YKNAKMIRKQVY+SQTVL EF+RIVEESQ+VAEDDKDWPEPDRVGKQELEVR+G+ HIRFTC+KIGSLLDVQDSKDPEGLRIFYYLVQDLRCLLFSLIGLHFKIKPIPT
Sbjct:    6 MTVGDGFYLRYYVGHKGKFGHEFMEFEINPSGLLRYANNSKYKNAKMIRKQVYLSQTVLSEFQRIVEESQIVAEDDKDWPEPDRVGKQELEVRLGESHIRFTCAKIGSLLDVQDSKDPEGLRIFYYLVQDLRCLLFSLIGLHFKIKPIPT 155
The following BLAST results are available for this feature:
BLAST of NO16G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23902.18.600e-7390.00mago nashi [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02140NO16G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02140.1NO16G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02140.1.cds1NO16G02140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02140.1.cds2NO16G02140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02140.1.cds3NO16G02140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02140.1 ID=NO16G02140.1|Name=NO16G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=453bp
ATGAGCAGCGGCGACGACTTCTATCTCCGCTACTATGTGGGGCACACAGG
AAAATTCGGTCACGAATTCATGGAATTTGAGATCCAGCCCTCCGGCCAGC
TACGGTACGCCAACAATAGCAACTACAAGAACGCCAAGATGATCCGCAAG
CAAGTGTATGTCTCCCAAACGGTGCTGGACGAATTTCGGCGCATCGTGGA
GGAGTCCCAGGTAGTGGCAGAAGACGACAAAGACTGGCCGGAGCCTGATA
GGGTTGGGAAACAAGAGCTGGAAGTCCGTATGGGCGATGATCACATTCGG
TTTACCTGCTCGAAGATTGGGTCGCTGCTGGATGTGCAAGACAGCAAGGA
TCCGGAGGGTTTGAGGATATTTTATTACTTGGTTCAGGACTTGCGGTGTT
TGTTGTTTTCATTGATTGGATTGCATTTCAAGATCAAACCCATTCCCACC
TAA
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protein sequence of NO16G02140.1

>NO16G02140.1-protein ID=NO16G02140.1-protein|Name=NO16G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSSGDDFYLRYYVGHTGKFGHEFMEFEIQPSGQLRYANNSNYKNAKMIRK
QVYVSQTVLDEFRRIVEESQVVAEDDKDWPEPDRVGKQELEVRMGDDHIR
FTCSKIGSLLDVQDSKDPEGLRIFYYLVQDLRCLLFSLIGLHFKIKPIPT
*
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mRNA from alignment at chr16:624536..625335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02140.1 ID=NO16G02140.1|Name=NO16G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=800bp|location=Sequence derived from alignment at chr16:624536..625335- (Nannochloropsis oceanica)
ATGAGCAGCGGCGACGACTTCTATCTCCGCTACTATGTGGGGCACACAGG
AAAATTCGGTCACGAATTCATGGAATTTGAGATCCAGCCCTCCGGCCAGC
TACGGTACGCCAACAATAGCAACTACAAGAACGCCAAGATGATCCGCAAG
CAAGGTACGTTCGTTAGGAAGGGAGGAAGGAGGTGGGACAGGAAGGGAAA
CAAGGAAAGCCTCATAACGCGTGATGCGCGTCGTTTTAAACTTCAACTTA
TGCGTCCATTTGCTTCACTAAAGTGTATGTCTCCCAAACGGTGCTGGACG
AATTTCGGCGCATCGTGGAGGAGTCCCAGGTAGTGGCAGAAGACGACAAA
GACTGGCCGGAGCCTGATAGGGTTGGGAAACAAGAGCTGGAAGTCCGTAT
GGGCGATGATCACATTCGGTTTACCTGCTCGAAGATTGGGTCGCTGCTGG
ATGTGCAAGACAGCAAGGATCCGGAGGGTTTGAGGATATTTTATTACTTG
GTTCAGGACTTGCGGTGTTTGTTGTTTTCATTGATTGGATTGCATTTCAA
GGTAAGATCTGCAAGGAAAGTGGGGGAATGGAGGGAATGGGAGGTGGCAC
TGTCGTCCAGATACATGCGGAAAGGGTGGAGTGGAGGGAACGTAGGGAAT
TATAGGTGAAGATCAATTTACGCAGACACTGCGGGAATGACTACAGATCA
TTGACGCGGGTGCGGACAAAGCGGGTGGCTCACATTTTCATCTTCATTTT
TCCTTTTCCCAACTCACGCGACCACACAGATCAAACCCATTCCCACCTAA
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Coding sequence (CDS) from alignment at chr16:624536..625335-

>NO16G02140.1 ID=NO16G02140.1|Name=NO16G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at chr16:624536..625335- (Nannochloropsis oceanica)
ATGAGCAGCGGCGACGACTTCTATCTCCGCTACTATGTGGGGCACACAGG
AAAATTCGGTCACGAATTCATGGAATTTGAGATCCAGCCCTCCGGCCAGC
TACGGTACGCCAACAATAGCAACTACAAGAACGCCAAGATGATCCGCAAG
CAAGTGTATGTCTCCCAAACGGTGCTGGACGAATTTCGGCGCATCGTGGA
GGAGTCCCAGGTAGTGGCAGAAGACGACAAAGACTGGCCGGAGCCTGATA
GGGTTGGGAAACAAGAGCTGGAAGTCCGTATGGGCGATGATCACATTCGG
TTTACCTGCTCGAAGATTGGGTCGCTGCTGGATGTGCAAGACAGCAAGGA
TCCGGAGGGTTTGAGGATATTTTATTACTTGGTTCAGGACTTGCGGTGTT
TGTTGTTTTCATTGATTGGATTGCATTTCAAGATCAAACCCATTCCCACC
TAA
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Synonyms
Publications