NO16G02100.1, NO16G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02100.1
Unique NameNO16G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr16:617607..618311 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:617607..618311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02100.1 vs.
Match: XP_005854175.1 (adenine phosphoribosyltransferase [Nannochloropsis gaditana CCMP526]; EKU22186.1 adenine phosphoribosyltransferase [Nannochloropsis gaditana CCMP526]; EWM23913.1 adenine phosphoribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 343.2 bits (879), Expect = 5.700e-91
Identity = 167/201 (83.08%), Postives = 185/201 (92.04%), Query Frame = 0 
Query:    1 MADNNFATAPDYEEDKRKIAAVIPYYAFHGIDRFYDISGLMLDPALFRRTVEILAERYKGQAIDKIGGFDARGFVLGTPLALALEVPFFMLRKQSKLPNSVTGASYTKEYKGDDGQGGDALCISRTAIQPGDRVLLIDDLIATGGTLMAGLDLVKAQQGVVVEAACMIELGFLGGGKKVREKHPDVSVWSFISEKHLQTKG 202
            MA  N AT+ DYEEDKRKIAAVIPYYAF GIDRFYDISGL+L PAL RRT+EIL ERYKG AIDKIGGFDARGF+LGTPLAL L++PFFMLRKQSKLPNSVTG SYTKEY+GDDG+GGDALCISRTAI PGD+VLL+DDLIATGGTL+AGLDLV A+QGVVVEAACMIELGFL GGKKVRE++P+V+VWS +SE HLQT+G
Sbjct:    1 MAGVNPATSQDYEEDKRKIAAVIPYYAFKGIDRFYDISGLLLSPALLRRTIEILVERYKGMAIDKIGGFDARGFLLGTPLALELDIPFFMLRKQSKLPNSVTGDSYTKEYEGDDGKGGDALCISRTAIIPGDKVLLVDDLIATGGTLLAGLDLVHARQGVVVEAACMIELGFLEGGKKVRERNPNVTVWSLLSEDHLQTRG 201
The following BLAST results are available for this feature:
BLAST of NO16G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854175.15.700e-9183.08adenine phosphoribosyltransferase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02100NO16G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02100.1NO16G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02100.1.cds1NO16G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02100.1.cds2NO16G02100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02100.1 ID=NO16G02100.1|Name=NO16G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGGCCGATAACAACTTCGCCACGGCACCCGACTATGAGGAGGATAAGCG
CAAAATCGCTGCCGTCATTCCGTATTATGCCTTCCACGGCATCGACCGCT
TCTACGACATCAGCGGGCTCATGCTGGATCCGGCGTTGTTCCGTCGAACC
GTGGAAATTCTGGCGGAGCGTTACAAGGGCCAGGCAATCGATAAGATTGG
TGGCTTTGATGCCCGTGGCTTTGTGTTGGGCACGCCTCTGGCTTTGGCAT
TGGAAGTTCCTTTTTTCATGCTTCGGAAGCAAAGCAAGCTTCCAAATTCG
GTGACAGGCGCGTCATACACTAAGGAGTATAAGGGCGATGATGGACAGGG
GGGGGATGCGTTGTGTATTTCTCGGACGGCTATTCAGCCCGGGGATCGGG
TGCTGTTGATTGATGATTTGATTGCGACAGGCGGGACGTTGATGGCGGGT
TTGGACCTCGTGAAGGCCCAACAAGGGGTGGTGGTGGAGGCGGCATGCAT
GATTGAATTGGGTTTCTTGGGGGGAGGAAAGAAGGTGAGGGAGAAGCACC
CGGATGTGAGTGTGTGGTCGTTTATTTCAGAGAAGCACCTTCAGACGAAA
GGAGAGGTGATGGCCAAGGAATAG
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protein sequence of NO16G02100.1

>NO16G02100.1-protein ID=NO16G02100.1-protein|Name=NO16G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MADNNFATAPDYEEDKRKIAAVIPYYAFHGIDRFYDISGLMLDPALFRRT
VEILAERYKGQAIDKIGGFDARGFVLGTPLALALEVPFFMLRKQSKLPNS
VTGASYTKEYKGDDGQGGDALCISRTAIQPGDRVLLIDDLIATGGTLMAG
LDLVKAQQGVVVEAACMIELGFLGGGKKVREKHPDVSVWSFISEKHLQTK
GEVMAKE*
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mRNA from alignment at chr16:617607..618311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02100.1 ID=NO16G02100.1|Name=NO16G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=705bp|location=Sequence derived from alignment at chr16:617607..618311- (Nannochloropsis oceanica)
ATGGCCGATAACAACTTCGCCACGGCACCCGACTATGAGGAGGATAAGCG
CAAGTAAGTAACAGGCAGGTCGTACATGCGCATGGTCGATACACCTAGTA
ACCTCCCCATCCATATCGATCTCTTCTTCCCTAGAATCGCTGCCGTCATT
CCGTATTATGCCTTCCACGGCATCGACCGCTTCTACGACATCAGCGGGCT
CATGCTGGATCCGGCGTTGTTCCGTCGAACCGTGGAAATTCTGGCGGAGC
GTTACAAGGGCCAGGCAATCGATAAGATTGGTGGCTTTGATGCCCGTGGC
TTTGTGTTGGGCACGCCTCTGGCTTTGGCATTGGAAGTTCCTTTTTTCAT
GCTTCGGAAGCAAAGCAAGCTTCCAAATTCGGTGACAGGCGCGTCATACA
CTAAGGAGTATAAGGGCGATGATGGACAGGGGGGGGATGCGTTGTGTATT
TCTCGGACGGCTATTCAGCCCGGGGATCGGGTGCTGTTGATTGATGATTT
GATTGCGACAGGCGGGACGTTGATGGCGGGTTTGGACCTCGTGAAGGCCC
AACAAGGGGTGGTGGTGGAGGCGGCATGCATGATTGAATTGGGTTTCTTG
GGGGGAGGAAAGAAGGTGAGGGAGAAGCACCCGGATGTGAGTGTGTGGTC
GTTTATTTCAGAGAAGCACCTTCAGACGAAAGGAGAGGTGATGGCCAAGG
AATAG
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Coding sequence (CDS) from alignment at chr16:617607..618311-

>NO16G02100.1 ID=NO16G02100.1|Name=NO16G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr16:617607..618311- (Nannochloropsis oceanica)
ATGGCCGATAACAACTTCGCCACGGCACCCGACTATGAGGAGGATAAGCG
CAAAATCGCTGCCGTCATTCCGTATTATGCCTTCCACGGCATCGACCGCT
TCTACGACATCAGCGGGCTCATGCTGGATCCGGCGTTGTTCCGTCGAACC
GTGGAAATTCTGGCGGAGCGTTACAAGGGCCAGGCAATCGATAAGATTGG
TGGCTTTGATGCCCGTGGCTTTGTGTTGGGCACGCCTCTGGCTTTGGCAT
TGGAAGTTCCTTTTTTCATGCTTCGGAAGCAAAGCAAGCTTCCAAATTCG
GTGACAGGCGCGTCATACACTAAGGAGTATAAGGGCGATGATGGACAGGG
GGGGGATGCGTTGTGTATTTCTCGGACGGCTATTCAGCCCGGGGATCGGG
TGCTGTTGATTGATGATTTGATTGCGACAGGCGGGACGTTGATGGCGGGT
TTGGACCTCGTGAAGGCCCAACAAGGGGTGGTGGTGGAGGCGGCATGCAT
GATTGAATTGGGTTTCTTGGGGGGAGGAAAGAAGGTGAGGGAGAAGCACC
CGGATGTGAGTGTGTGGTCGTTTATTTCAGAGAAGCACCTTCAGACGAAA
GGAGAGGTGATGGCCAAGGAATAG
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Synonyms
Publications