NO16G01740.1, NO16G01740.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G01740.1
Unique Name	NO16G01740.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2966
Alignment location	chr16:519905..523259 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:519905..523259 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO16G01740.1 vs.
Match: EWM23991.1 (hypothetical protein Naga_100027g47 [Nannochloropsis gaditana])

HSP 1 Score: 396.0 bits (1016), Expect = 1.400e-106
Identity = 219/333 (65.77%), Postives = 257/333 (77.18%), Query Frame = 0

Query:   52 RPYPTFNLRSLATMPPYVKKFQTAKTAYASEVAAVRKEYIAQVQERKEAEQAKQLAETARIKEAKRQRLLVKAAQRKKNMAIFLQAQKEQRERFERYLAAMQEVREAYTSEVRAKQANLLKALTAESSLWITPENVDEKITDDLFAVAGRTTFTPTQRSRDWQFMALPRVPDFSAYSEEDLFDEKEDKHFLTDKSPWRAEEGSSIVIPEGHHFYTPGPAENLPRKLSSSSDSVDEEGVQGEEDNILYFEDAAYRPSFLAALYQGAYEDFQPSQVPDGEVEHIRELAERYEEQLQTILKQSR---GREGKMTGAGGAS---KKAAFDPKAFSIE 379
            RP      RSLA M P VK+FQ AK AYA+ VAAVRKEYIA+VQ++KE E+AK  AETARIKEAKRQRLLVKA +RKKN++ FL+AQKEQR+RF+RYLAAMQEVREAY  EVR KQ +L+ AL+AES+LWIT EN+DEKITDDLF VAGR TFTPT+RSRDW FMALPRVPDFSAYS+EDLFDEKED HFLT+KSPW  +E S+I IPE H FY  GPAE +PR ++      D++ +    D  +YF+DAAYRPS +AA++QGAY DF+PSQVPD EV+ IRELAERYEEQLQTIL  S+     E + T     S    +  FDPK FS E
Sbjct:   71 RPQHALQHRSLAAMAPEVKRFQLAKQAYAARVAAVRKEYIAEVQQKKEQEEAKLRAETARIKEAKRQRLLVKAEERKKNLSTFLEAQKEQRQRFQRYLAAMQEVREAYVEEVRDKQKHLIDALSAESTLWITSENMDEKITDDLFDVAGRCTFTPTRRSRDWHFMALPRVPDFSAYSDEDLFDEKEDVHFLTEKSPWGHDEKSTINIPEEHEFYASGPAERVPRVVT------DDDTMSSSTDGNIYFKDAAYRPSLIAAIFQGAYADFKPSQVPDKEVKLIRELAERYEEQLQTILHSSQDDVNAEARGTSKSPTSTIADRGGFDPKVFSKE 397

The following BLAST results are available for this feature:

BLAST of NO16G01740.1 vs.

BLAST of NO16G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23991.1	1.400e-106	65.77	hypothetical protein Naga_100027g47 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G01740	NO16G01740	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G01740.1	NO16G01740.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G01740.1.cds1	NO16G01740.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G01740.1.cds2	NO16G01740.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:519905..523259-
coding sequence from alignment at chr16:519905..523259-

mRNA sequence

>NO16G01740.1 ID=NO16G01740.1|Name=NO16G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2966bp
AGTGTTACAGCACACTATCTCGTCATACTAGTGTCGTTCTTGCTATCATA
AAACCGCTTTTGACAGCATACTGAGAGCTTTGCTACCTTACATGGCTGTA
CACACACACACCCCTCCCTCACAGTCCCTTGTTAGTCTGAAACGTGGCAA
TAAACCGACCCTGGCCATCTTTCAATCCCTGAAAATGAGGCTCGAGCTCC
GTCGCCTTGAAGGAGGCAGTTTGAGGAAACAAGGCCATACACACAGGCAG
GGCCCCTGCCAATGACCCCGTGATTGCAGCCACTTCAACAGCTAGACGCA
TTCGGGGGTTCTTGGGTAGAAGGCTTAGCTTGCCCAAGCCCTGCATTATG
GCATGCGGCAACAGCAGGACAGGCAAAGGGAAGATAAGCCCCCGAGAGAC
AGCCGTCTGTAACACGACACTCTTTCCTGCAATGAGGGATTGGCCGTGAT
ATTTGCCCGTGGCGTCGCTCATGGGTGCCCCTTCCCTCAGTTCATTTTGA
CGTGAAAACATAATGTTGCTCATACCAGCAGCCGAAACCGCAATGTATGA
AAAGAGCGCAGGGGAAGCTGCTGGGATTCGCTTGGCCACCTTGCCGAGCC
CCAAAGCTAGGGAGCAGGAAGTTACAACCGCCAACAGGTAGGACTGAAGT
ACTTGCGTGGTTTCTGCTTCCCCGCCCCCTGAGCGATTACTGAAATTAAC
GGCAGAATTATAAGTTTGATTGAGCCAATGCACAAAAAGAACGCTTCCTG
GAGATGTGGCATTCATCATCATTAACACAATGGGGACGTTGCCGGGCGTA
AAGGCCGACATCCGGAAGGGCACGGGAATGGCTTCCTTGCTCACGGGGTG
GGTGCAGGCTTCGAGGGTAGCTTTGCAGTCCCATAGCTCTTGGTCATCGT
GATGGATGCCCTTGCGCCAGTCCTGAATGATACTATCGCATCGTTGTAAT
TCTTGCGAAGGGGTGAAAAGTGTGCGGGGGTTCAAGACTCGGAGGAAGTG
ACTGAGGCGCCCGGCAAAGGTGTTGAGGTCGAACAGGGAGTTCGCGGGGT
CAAAGCGGGGTGGTTTGCTGGTGGGTGGTGCCGAAGTCATGGTTCTAGAG
GGTTGGAATGGGAGATGTCAGATCATTAGGATGAGAAAGACGAGCCGCTG
GTATGGAGGCAGTGGATGAGGCGCTGCGTGCAGCAGTTGCTGGGGCAAAA
TATGAAAGTTCTTTGAGTTTTCTCCCTTCGCCACAGTGAAAGGGACTGTT
AATCCCTTGTGGACACCGATAACGACATTTCGTAGCGTCCTCCGTGAGCG
TGGAAGGGTCTTAATAAGAGATTTTTGCTTGTAGGTTGAAAAGAGGGTTG
TGGGAGAGGAGGTATTTGATTTAACATGCCCCTTCATTTGTCACCAGTTT
GTCACCGTCATTGCATGCACGCAATACCCCGCACAAAACACGCAGACTGA
CGCCTCTTCACCATGCCCTGTTGATACTGCTGAATGGAGATATCTAGTGC
GCCGGAACGTGTGCTCATTATCCTTTCGTTGATTTCTACCTGAGATCTCA
TCTCCACGTCCACACAAACAGCTGCTCAAAACAGTCATGCGAGCGCTCCG
GCCAAGCGGCTGCACCTTGGTCGAGTGCGGCAGCAGCACCACCCTCATCG
TACAGCGGGTCGGCAGAGGAGTCCTGCCTGCGTCGGCGGCAGCGTCATCA
TCCTCATCATCATTACCATCCTCATCATCATCGAAGCCACGACCCTACCC
TACTTTCAACCTTCGCTCCCTCGCAACTATGCCCCCCTATGTCAAGAAGT
TCCAAACCGCCAAAACAGCCTACGCCTCCGAAGTAGCCGCGGTCCGGAAA
GAGTACATTGCGCAAGTTCAAGAACGCAAGGAAGCCGAACAAGCCAAGCA
ACTCGCCGAAACCGCCCGCATCAAAGAAGCCAAGCGTCAACGCCTCCTCG
TTAAGGCTGCCCAGCGTAAGAAGAATATGGCCATCTTTCTCCAGGCCCAA
AAGGAGCAACGAGAGCGATTTGAACGCTATCTCGCCGCAATGCAGGAGGT
CCGCGAAGCCTACACTTCTGAAGTCCGAGCCAAGCAAGCCAATCTCCTCA
AAGCCCTAACCGCAGAGTCCTCCCTTTGGATCACGCCCGAAAACGTTGAC
GAGAAAATCACCGATGATCTTTTTGCTGTCGCGGGACGCACCACATTCAC
CCCAACCCAACGCAGTCGTGACTGGCAATTTATGGCCTTGCCCCGCGTGC
CCGATTTCTCGGCTTACTCGGAAGAGGACCTGTTTGATGAGAAGGAAGAT
AAACATTTTCTGACAGATAAGAGCCCCTGGCGCGCGGAGGAAGGCTCATC
GATTGTCATTCCGGAAGGGCATCATTTCTATACTCCTGGACCTGCGGAAA
ACTTGCCGCGGAAGTTGTCGTCGTCTTCGGATAGTGTTGATGAGGAGGGA
GTACAGGGGGAAGAGGACAATATTTTATACTTTGAAGATGCGGCATACCG
ACCTAGTTTCTTGGCGGCATTGTACCAAGGCGCTTATGAGGACTTTCAAC
CGTCGCAGGTACCGGACGGGGAGGTTGAGCACATTCGGGAGTTGGCGGAG
AGGTACGAGGAGCAGTTGCAGACTATTTTGAAGCAGTCTCGGGGACGGGA
GGGAAAGATGACGGGGGCGGGAGGGGCGAGTAAGAAGGCGGCGTTTGACC
CCAAGGCATTTTCGATAGAGCAGAAGGACGGGACTAACTAGTGGGCATAT
GGGCCAAAAGAAGAGTTCAAAGGCAGTAGATAGAGTAGTGTGAGTGTGTT
TCGGTGCGTAGTAGGGAATTGAGAAAAAAGAATTAAGAATTAAGAATTAA
GAAGAAGAAGAAAGCGGTTAAAGAAGAAAAAGCAGAAATTGCGCCGGTGA
TTTTGCGACATGGGAGTCTAGAGGAGGTTGTGCTTTTGTTGTTGCCATCA
TCACTTACACTAAGCA

protein sequence of NO16G01740.1

>NO16G01740.1-protein ID=NO16G01740.1-protein|Name=NO16G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MRALRPSGCTLVECGSSTTLIVQRVGRGVLPASAAASSSSSSLPSSSSSK
PRPYPTFNLRSLATMPPYVKKFQTAKTAYASEVAAVRKEYIAQVQERKEA
EQAKQLAETARIKEAKRQRLLVKAAQRKKNMAIFLQAQKEQRERFERYLA
AMQEVREAYTSEVRAKQANLLKALTAESSLWITPENVDEKITDDLFAVAG
RTTFTPTQRSRDWQFMALPRVPDFSAYSEEDLFDEKEDKHFLTDKSPWRA
EEGSSIVIPEGHHFYTPGPAENLPRKLSSSSDSVDEEGVQGEEDNILYFE
DAAYRPSFLAALYQGAYEDFQPSQVPDGEVEHIRELAERYEEQLQTILKQ
SRGREGKMTGAGGASKKAAFDPKAFSIEQKDGTN*

mRNA from alignment at chr16:519905..523259-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G01740.1 ID=NO16G01740.1|Name=NO16G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=3355bp|location=Sequence derived from alignment at chr16:519905..523259- (Nannochloropsis oceanica)
AGTGTTACAGCACACTATCTCGTCATACTAGTGTCGTTCTTGCTATCATA
AAACCGCTTTTGACAGCATACTGAGAGCTTTGCTACCTTACATGGCTGTA
CACACACACACCCCTCCCTCACAGTCCCTTGTTAGTCTGAAACGTGGCAA
TAAACCGACCCTGGCCATCTTTCAATCCCTGAAAATGAGGCTCGAGCTCC
GTCGCCTTGAAGGAGGCAGTTTGAGGAAACAAGGCCATACACACAGGCAG
GGCCCCTGCCAATGACCCCGTGATTGCAGCCACTTCAACAGCTAGACGCA
TTCGGGGGTTCTTGGGTAGAAGGCTTAGCTTGCCCAAGCCCTGCATTATG
GCATGCGGCAACAGCAGGACAGGCAAAGGGAAGATAAGCCCCCGAGAGAC
AGCCGTCTGTAACACGACACTCTTTCCTGCAATGAGGGATTGGCCGTGAT
ATTTGCCCGTGGCGTCGCTCATGGGTGCCCCTTCCCTCAGTTCATTTTGA
CGTGAAAACATAATGTTGCTCATACCAGCAGCCGAAACCGCAATGTATGA
AAAGAGCGCAGGGGAAGCTGCTGGGATTCGCTTGGCCACCTTGCCGAGCC
CCAAAGCTAGGGAGCAGGAAGTTACAACCGCCAACAGGTAGGACTGAAGT
ACTTGCGTGGTTTCTGCTTCCCCGCCCCCTGAGCGATTACTGAAATTAAC
GGCAGAATTATAAGTTTGATTGAGCCAATGCACAAAAAGAACGCTTCCTG
GAGATGTGGCATTCATCATCATTAACACAATGGGGACGTTGCCGGGCGTA
AAGGCCGACATCCGGAAGGGCACGGGAATGGCTTCCTTGCTCACGGGGTG
GGTGCAGGCTTCGAGGGTAGCTTTGCAGTCCCATAGCTCTTGGTCATCGT
GATGGATGCCCTTGCGCCAGTCCTGAATGATACTATCGCATCGTTGTAAT
TCTTGCGAAGGGGTGAAAAGTGTGCGGGGGTTCAAGACTCGGAGGAAGTG
ACTGAGGCGCCCGGCAAAGGTGTTGAGGTCGAACAGGGAGTTCGCGGGGT
CAAAGCGGGGTGGTTTGCTGGTGGGTGGTGCCGAAGTCATGGTTCTAGAG
GGTTGGAATGGGAGATGTCAGATCATTAGGATGAGAAAGACGAGCCGCTG
GTATGGAGGCAGTGGATGAGGCGCTGCGTGCAGCAGTTGCTGGGGCAAAA
TATGAAAGTTCTTTGAGTTTTCTCCCTTCGCCACAGTGAAAGGGACTGTT
AATCCCTTGTGGACACCGATAACGACATTTCGTAGCGTCCTCCGTGAGCG
TGGAAGGGTCTTAATAAGAGATTTTTGCTTGTAGGTTGAAAAGAGGGTTG
TGGGAGAGGAGGTATTTGATTTAACATGCCCCTTCATTTGTCACCAGTTT
GTCACCGTCATTGCATGCACGCAATACCCCGCACAAAACACGCAGACTGA
CGCCTCTTCACCATGCCCTGTTGATACTGCTGAATGGAGATATCTAGTGC
GCCGGAACGTGTGCTCATTATCCTTTCGTTGATTTCTACCTGAGATCTCA
TCTCCACGTCCACACAAACAGCTGCTCAAAACAGTCATGCGAGCGCTCCG
GCCAAGCGGCTGCACCTTGGTCGAGTGCGGCAGCAGCACCACCCTCATCG
TACAGCGGGTCGGCAGAGGAGTCCTGCCTGCGTCGGCGGCAGCGTCATCA
TCCTCATCATCATTACCATCCTCATCATCATCGAAGGTAAGTTTATCAAA
ATGCCAACCCCATCTTCGTGTTCTCTATTTGCCTGTGCGTCCAGGTGTCA
TGAAGGACCCTATTGTTTGTACGATGTATTGCTACCGTTCGTGTATTCAA
GAGGTATTGCCTAGATAATGGATTTTCACAGCCCTCTCCTACCTACAATT
GAGTTTTGGGGGAACCTAGGAATGAATTCCAGAGCCCTTTTGCACACGAG
TTCCCAGTCATTCACTCCATCCTGCCATGTGGTCTTACGTGTTTGTTTGT
CTGTTTCTTTGCTTGTTGGTGTTACACCGGGAAGCAAACCCTCGTACCAA
GTCCCTGTCCTTGCGCCTGTCTTGTCCTCCTGTCTCACCACCCACCACCC
CACCTGGTATCAAACACACACACAGCCACGACCCTACCCTACTTTCAACC
TTCGCTCCCTCGCAACTATGCCCCCCTATGTCAAGAAGTTCCAAACCGCC
AAAACAGCCTACGCCTCCGAAGTAGCCGCGGTCCGGAAAGAGTACATTGC
GCAAGTTCAAGAACGCAAGGAAGCCGAACAAGCCAAGCAACTCGCCGAAA
CCGCCCGCATCAAAGAAGCCAAGCGTCAACGCCTCCTCGTTAAGGCTGCC
CAGCGTAAGAAGAATATGGCCATCTTTCTCCAGGCCCAAAAGGAGCAACG
AGAGCGATTTGAACGCTATCTCGCCGCAATGCAGGAGGTCCGCGAAGCCT
ACACTTCTGAAGTCCGAGCCAAGCAAGCCAATCTCCTCAAAGCCCTAACC
GCAGAGTCCTCCCTTTGGATCACGCCCGAAAACGTTGACGAGAAAATCAC
CGATGATCTTTTTGCTGTCGCGGGACGCACCACATTCACCCCAACCCAAC
GCAGTCGTGACTGGCAATTTATGGCCTTGCCCCGCGTGCCCGATTTCTCG
GCTTACTCGGAAGAGGACCTGTTTGATGAGAAGGAAGATAAACATTTTCT
GACAGATAAGAGCCCCTGGCGCGCGGAGGAAGGCTCATCGATTGTCATTC
CGGAAGGGCATCATTTCTATACTCCTGGACCTGCGGAAAACTTGCCGCGG
AAGTTGTCGTCGTCTTCGGATAGTGTTGATGAGGAGGGAGTACAGGGGGA
AGAGGACAATATTTTATACTTTGAAGATGCGGCATACCGACCTAGTTTCT
TGGCGGCATTGTACCAAGGCGCTTATGAGGACTTTCAACCGTCGCAGGTA
CCGGACGGGGAGGTTGAGCACATTCGGGAGTTGGCGGAGAGGTACGAGGA
GCAGTTGCAGACTATTTTGAAGCAGTCTCGGGGACGGGAGGGAAAGATGA
CGGGGGCGGGAGGGGCGAGTAAGAAGGCGGCGTTTGACCCCAAGGCATTT
TCGATAGAGCAGAAGGACGGGACTAACTAGTGGGCATATGGGCCAAAAGA
AGAGTTCAAAGGCAGTAGATAGAGTAGTGTGAGTGTGTTTCGGTGCGTAG
TAGGGAATTGAGAAAAAAGAATTAAGAATTAAGAATTAAGAAGAAGAAGA
AAGCGGTTAAAGAAGAAAAAGCAGAAATTGCGCCGGTGATTTTGCGACAT
GGGAGTCTAGAGGAGGTTGTGCTTTTGTTGTTGCCATCATCACTTACACT
AAGCA

Coding sequence (CDS) from alignment at chr16:519905..523259-

>NO16G01740.1 ID=NO16G01740.1|Name=NO16G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr16:519905..523259- (Nannochloropsis oceanica)
ATGCGAGCGCTCCGGCCAAGCGGCTGCACCTTGGTCGAGTGCGGCAGCAG
CACCACCCTCATCGTACAGCGGGTCGGCAGAGGAGTCCTGCCTGCGTCGG
CGGCAGCGTCATCATCCTCATCATCATTACCATCCTCATCATCATCGAAG
CCACGACCCTACCCTACTTTCAACCTTCGCTCCCTCGCAACTATGCCCCC
CTATGTCAAGAAGTTCCAAACCGCCAAAACAGCCTACGCCTCCGAAGTAG
CCGCGGTCCGGAAAGAGTACATTGCGCAAGTTCAAGAACGCAAGGAAGCC
GAACAAGCCAAGCAACTCGCCGAAACCGCCCGCATCAAAGAAGCCAAGCG
TCAACGCCTCCTCGTTAAGGCTGCCCAGCGTAAGAAGAATATGGCCATCT
TTCTCCAGGCCCAAAAGGAGCAACGAGAGCGATTTGAACGCTATCTCGCC
GCAATGCAGGAGGTCCGCGAAGCCTACACTTCTGAAGTCCGAGCCAAGCA
AGCCAATCTCCTCAAAGCCCTAACCGCAGAGTCCTCCCTTTGGATCACGC
CCGAAAACGTTGACGAGAAAATCACCGATGATCTTTTTGCTGTCGCGGGA
CGCACCACATTCACCCCAACCCAACGCAGTCGTGACTGGCAATTTATGGC
CTTGCCCCGCGTGCCCGATTTCTCGGCTTACTCGGAAGAGGACCTGTTTG
ATGAGAAGGAAGATAAACATTTTCTGACAGATAAGAGCCCCTGGCGCGCG
GAGGAAGGCTCATCGATTGTCATTCCGGAAGGGCATCATTTCTATACTCC
TGGACCTGCGGAAAACTTGCCGCGGAAGTTGTCGTCGTCTTCGGATAGTG
TTGATGAGGAGGGAGTACAGGGGGAAGAGGACAATATTTTATACTTTGAA
GATGCGGCATACCGACCTAGTTTCTTGGCGGCATTGTACCAAGGCGCTTA
TGAGGACTTTCAACCGTCGCAGGTACCGGACGGGGAGGTTGAGCACATTC
GGGAGTTGGCGGAGAGGTACGAGGAGCAGTTGCAGACTATTTTGAAGCAG
TCTCGGGGACGGGAGGGAAAGATGACGGGGGCGGGAGGGGCGAGTAAGAA
GGCGGCGTTTGACCCCAAGGCATTTTCGATAGAGCAGAAGGACGGGACTA
ACTAG

Synonyms

Publications