NO16G01310.1, NO16G01310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G01310.1
Unique Name	NO16G01310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2166
Alignment location	chr16:402185..404541 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:402185..404541 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO16G01310.1 vs.

BLAST of NO16G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G01310	NO16G01310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G01310.1	NO16G01310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G01310.1.cds1	NO16G01310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G01310.1.cds2	NO16G01310.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:402185..404541-
coding sequence from alignment at chr16:402185..404541-

mRNA sequence

>NO16G01310.1 ID=NO16G01310.1|Name=NO16G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp
ATGGAAAAGCCGTCCGTCCTTATAGAACCCACCCCAAGCTTCATCAACAA
TCGCCAAGGCCCCGAGCAACGGCCACGCCCTACCATGACTGCGCCCAACC
CCAAGAACCAGGCCATCGAGCTCGCCATCCAATGCCATGCAGCCTCGTAT
TTCAAGACCGCAAAGGGCTCAGTGGATAATCAGATGAACTGGCTCCAGCT
TGCAAGCACTCTTTACGCCAATGCCTCGCGTGAGCTCCGTGATATGCACC
CTTGCACAAAGCTCTCCCTCGCCTTATTTGTGGTAGCCACCGGTGCAATG
GACAAGGCCTTGGAAGCCGTGGTATTGCTTCGGGATTGGAAAGTGACCAA
GGGTCCTTGGGCGAGCTTCAATCTAAACCTGATAGCCCAAGCCACCCTCC
ATGAAGTCCGCCAAGCTATTGAAGAGGCCGAGCAAGACCAAGACGCCTCG
GTCTTCGACCGGCAGCAAAAAATCGCCCCCCATGTCCTCAAAGAAAAGCT
CGAAGCCGGGATGAAAAACATCCTTGAACCGCAGCTTGATCAATGCACTC
CTCTAGTTCGCTCCTGGCTCTTAGGTCTCCAGGAGGAACTTCGGCACACG
GCAACCCAAGCAGTTGCCTTGAAGAAGGTCTCAGTCATTCCCTCCTTGTT
AAAAGCACATGACTTAAATCGATTGCAGAATCCCTTTGTCACATGGGTCT
TGGCGCTATTGGCAGAGTTTGGGGCGCCACCTGTGAGGAGGGCCTTGAGG
GAGGTCGGTTTTGGTGGGGAGGAAGGGATGGAGGAACTGATGGAGCGGGA
AGTGTCGGTAGAGAGAGATGAGGGGAGAAAGCAGGAGAAGCGCTGGCGAG
AGCATCGAGTGGAGGAGATGAAAGACGAAGTGGATGTGGAAGAGGAGGAA
GCTGTAACGCTGACGAAAAAGCAGCAGCAGCAGCAGCAGCAGCGGGGGCA
GAAAGACAAGAGCAAGGAGGAGGATGAGGATGAGGAGGAGGAGGAAGGGG
TGGCAGGAGGAGAAGAGCATAGAGGGGCTAATTCTAATAAGAGGGGAAAG
ACTGCGAGAAAATCACAGGATCAGCTGCGACAGGAGAGAAAGAGGAAGGA
TAAAAAAGTGTCTCCGTCCACGAAGTACAGCGCTCGTGCAGCGATGGCTG
CCGAGGATGAAGAGAAGGAGGAGGAGCAGCAGCAGCAGCCGGATAGTCCC
CTGGCGGCAATGGCTCTGTCCACATCTACCATCAATCTTCGTACCCGAAG
ACAAACTTCAGAAGTAGAGGCAGGTCCGTTGGAGGTGGGAGACGCCGTGT
ACGTCCAATCCAGGTTTTTAGTTGTCCCACGCGCGGTGGTAACGGCAGTG
GTGGAACCGGGAAAGTTGGAGAGGAAGTATGTAGCGGAAGAGAAGATAGA
AGAGAGGACATTTGACGTGATGTACGAAGAGGAAGGGGATGGGGTGGAGA
AGGTAGCAAAGATGCTGCCTCGGCAATATCTGACGCTGTTGGAAAAGGGC
GCTGGATTACTCGTGCCTTCCCCCTCCCCCACGCTCCAGCGGCGACAACA
GCAACAGTACCAGCAGCGTTTGAAGGATGTGAATGCCTCGAAAAAGTACA
GTGCACGGGTGGCCATGGCTGCGGAGGAAGTGGAAGAGGCGGACGAGCAG
GGGCAGGAGCAGGAGTTGCAGAAAGGGAGAAAGAGGATCAAGATTGCTGC
GACTACTACGCAAGAGGAGCAGGGGAAGGAAGAGGAAGAGGGTGGGGAGA
AGGACACCTCACCCAAGCGTAGCGCTCGAGAGTTTTGGACGGAGCCTCAG
ACACAAGAACCCATGACGCAATTTCCGGAGGGCGAGGAGGAACAGGAAGG
TGGGGGAGAATGTGAGACGGAGGACCAAGAAAACCAGGACAGTAACGGAC
GCAAGGAGGAGGGGGGAGAGGAAGCACAAGGGGGGGGAAAAGGGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAATCGGGGAAGATGG
AAGAGATTGAAAGCGTGAGCTCCGATACACGGGGTAGGGGGTCGTGGATC
TCGCCGTTGCAGGCCCCGTTCGGAATGCTGAGGCGCGTGCTGGTGGGTGG
AAAGACACAGACTTAG

protein sequence of NO16G01310.1

>NO16G01310.1-protein ID=NO16G01310.1-protein|Name=NO16G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MEKPSVLIEPTPSFINNRQGPEQRPRPTMTAPNPKNQAIELAIQCHAASY
FKTAKGSVDNQMNWLQLASTLYANASRELRDMHPCTKLSLALFVVATGAM
DKALEAVVLLRDWKVTKGPWASFNLNLIAQATLHEVRQAIEEAEQDQDAS
VFDRQQKIAPHVLKEKLEAGMKNILEPQLDQCTPLVRSWLLGLQEELRHT
ATQAVALKKVSVIPSLLKAHDLNRLQNPFVTWVLALLAEFGAPPVRRALR
EVGFGGEEGMEELMEREVSVERDEGRKQEKRWREHRVEEMKDEVDVEEEE
AVTLTKKQQQQQQQRGQKDKSKEEDEDEEEEEGVAGGEEHRGANSNKRGK
TARKSQDQLRQERKRKDKKVSPSTKYSARAAMAAEDEEKEEEQQQQPDSP
LAAMALSTSTINLRTRRQTSEVEAGPLEVGDAVYVQSRFLVVPRAVVTAV
VEPGKLERKYVAEEKIEERTFDVMYEEEGDGVEKVAKMLPRQYLTLLEKG
AGLLVPSPSPTLQRRQQQQYQQRLKDVNASKKYSARVAMAAEEVEEADEQ
GQEQELQKGRKRIKIAATTTQEEQGKEEEEGGEKDTSPKRSAREFWTEPQ
TQEPMTQFPEGEEEQEGGGECETEDQENQDSNGRKEEGGEEAQGGGKGEE
EEEEEEEEEEEEEEEEEEEEEEEEEEEEQSGKMEEIESVSSDTRGRGSWI
SPLQAPFGMLRRVLVGGKTQT*

mRNA from alignment at chr16:402185..404541-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G01310.1 ID=NO16G01310.1|Name=NO16G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp|location=Sequence derived from alignment at chr16:402185..404541- (Nannochloropsis oceanica)
ATGGAAAAGGTGAGAAGTATTAGGGTGGGTGATGGATGGGTGTGAGGGAA
GAGGTCGGTGTTGGCGAACTTTCTCTTCTTTCGCTACCGATTTGCTGCTA
CCCCGGCATTATTTCCTAGGGAGTATTGGAATGCTCCCGATGTCGTAGTT
GAATTTGTTGCGCATTTCTAATGCTTTCCTTGCCTCCGCGCCACCCCTAG
CCGTCCGTCCTTATAGAACCCACCCCAAGCTTCATCAACAATCGCCAAGG
CCCCGAGCAACGGCCACGCCCTACCATGACTGCGCCCAACCCCAAGAACC
AGGCCATCGAGCTCGCCATCCAATGCCATGCAGCCTCGTATTTCAAGACC
GCAAAGGGCTCAGTGGATAATCAGATGAACTGGCTCCAGCTTGCAAGCAC
TCTTTACGCCAATGCCTCGCGTGAGCTCCGTGATATGCACCCTTGCACAA
AGCTCTCCCTCGCCTTATTTGTGGTAGCCACCGGTGCAATGGACAAGGCC
TTGGAAGCCGTGGTATTGCTTCGGGATTGGAAAGTGACCAAGGGTCCTTG
GGCGAGCTTCAATCTAAACCTGATAGCCCAAGCCACCCTCCATGAAGTCC
GCCAAGCTATTGAAGAGGCCGAGCAAGACCAAGACGCCTCGGTCTTCGAC
CGGCAGCAAAAAATCGCCCCCCATGTCCTCAAAGAAAAGCTCGAAGCCGG
GATGAAAAACATCCTTGAACCGCAGCTTGATCAATGCACTCCTCTAGTTC
GCTCCTGGCTCTTAGGTCTCCAGGAGGAACTTCGGCACACGGCAACCCAA
GCAGTTGCCTTGAAGAAGGTCTCAGTCATTCCCTCCTTGTTAAAAGCACA
TGACTTAAATCGATTGCAGAATCCCTTTGTCACATGGGTCTTGGCGCTAT
TGGCAGAGTTTGGGGCGCCACCTGTGAGGAGGGCCTTGAGGGAGGTCGGT
TTTGGTGGGGAGGAAGGGATGGAGGAACTGATGGAGCGGGAAGTGTCGGT
AGAGAGAGATGAGGGGAGAAAGCAGGAGAAGCGCTGGCGAGAGCATCGAG
TGGAGGAGATGAAAGACGAAGTGGATGTGGAAGAGGAGGAAGCTGTAACG
CTGACGAAAAAGCAGCAGCAGCAGCAGCAGCAGCGGGGGCAGAAAGACAA
GAGCAAGGAGGAGGATGAGGATGAGGAGGAGGAGGAAGGGGTGGCAGGAG
GAGAAGAGCATAGAGGGGCTAATTCTAATAAGAGGGGAAAGACTGCGAGA
AAATCACAGGATCAGCTGCGACAGGAGAGAAAGAGGAAGGATAAAAAAGT
GTCTCCGTCCACGAAGTACAGCGCTCGTGCAGCGATGGCTGCCGAGGATG
AAGAGAAGGAGGAGGAGCAGCAGCAGCAGCCGGATAGTCCCCTGGCGGCA
ATGGCTCTGTCCACATCTACCATCAATCTTCGTACCCGAAGACAAACTTC
AGAAGTAGAGGCAGGTCCGTTGGAGGTGGGAGACGCCGTGTACGTCCAAT
CCAGGTTTTTAGTTGTCCCACGCGCGGTGGTAACGGCAGTGGTGGAACCG
GGAAAGTTGGAGAGGAAGTATGTAGCGGAAGAGAAGATAGAAGAGAGGAC
ATTTGACGTGATGTACGAAGAGGAAGGGGATGGGGTGGAGAAGGTAGCAA
AGATGCTGCCTCGGCAATATCTGACGCTGTTGGAAAAGGGCGCTGGATTA
CTCGTGCCTTCCCCCTCCCCCACGCTCCAGCGGCGACAACAGCAACAGTA
CCAGCAGCGTTTGAAGGATGTGAATGCCTCGAAAAAGTACAGTGCACGGG
TGGCCATGGCTGCGGAGGAAGTGGAAGAGGCGGACGAGCAGGGGCAGGAG
CAGGAGTTGCAGAAAGGGAGAAAGAGGATCAAGATTGCTGCGACTACTAC
GCAAGAGGAGCAGGGGAAGGAAGAGGAAGAGGGTGGGGAGAAGGACACCT
CACCCAAGCGTAGCGCTCGAGAGTTTTGGACGGAGCCTCAGACACAAGAA
CCCATGACGCAATTTCCGGAGGGCGAGGAGGAACAGGAAGGTGGGGGAGA
ATGTGAGACGGAGGACCAAGAAAACCAGGACAGTAACGGACGCAAGGAGG
AGGGGGGAGAGGAAGCACAAGGGGGGGGAAAAGGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGCAATCGGGGAAGATGGAAGAGATTG
AAAGCGTGAGCTCCGATACACGGGGTAGGGGGTCGTGGATCTCGCCGTTG
CAGGCCCCGTTCGGAATGCTGAGGCGCGTGCTGGTGGGTGGAAAGACACA
GACTTAG

Coding sequence (CDS) from alignment at chr16:402185..404541-

>NO16G01310.1 ID=NO16G01310.1|Name=NO16G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at chr16:402185..404541- (Nannochloropsis oceanica)
ATGGAAAAGCCGTCCGTCCTTATAGAACCCACCCCAAGCTTCATCAACAA
TCGCCAAGGCCCCGAGCAACGGCCACGCCCTACCATGACTGCGCCCAACC
CCAAGAACCAGGCCATCGAGCTCGCCATCCAATGCCATGCAGCCTCGTAT
TTCAAGACCGCAAAGGGCTCAGTGGATAATCAGATGAACTGGCTCCAGCT
TGCAAGCACTCTTTACGCCAATGCCTCGCGTGAGCTCCGTGATATGCACC
CTTGCACAAAGCTCTCCCTCGCCTTATTTGTGGTAGCCACCGGTGCAATG
GACAAGGCCTTGGAAGCCGTGGTATTGCTTCGGGATTGGAAAGTGACCAA
GGGTCCTTGGGCGAGCTTCAATCTAAACCTGATAGCCCAAGCCACCCTCC
ATGAAGTCCGCCAAGCTATTGAAGAGGCCGAGCAAGACCAAGACGCCTCG
GTCTTCGACCGGCAGCAAAAAATCGCCCCCCATGTCCTCAAAGAAAAGCT
CGAAGCCGGGATGAAAAACATCCTTGAACCGCAGCTTGATCAATGCACTC
CTCTAGTTCGCTCCTGGCTCTTAGGTCTCCAGGAGGAACTTCGGCACACG
GCAACCCAAGCAGTTGCCTTGAAGAAGGTCTCAGTCATTCCCTCCTTGTT
AAAAGCACATGACTTAAATCGATTGCAGAATCCCTTTGTCACATGGGTCT
TGGCGCTATTGGCAGAGTTTGGGGCGCCACCTGTGAGGAGGGCCTTGAGG
GAGGTCGGTTTTGGTGGGGAGGAAGGGATGGAGGAACTGATGGAGCGGGA
AGTGTCGGTAGAGAGAGATGAGGGGAGAAAGCAGGAGAAGCGCTGGCGAG
AGCATCGAGTGGAGGAGATGAAAGACGAAGTGGATGTGGAAGAGGAGGAA
GCTGTAACGCTGACGAAAAAGCAGCAGCAGCAGCAGCAGCAGCGGGGGCA
GAAAGACAAGAGCAAGGAGGAGGATGAGGATGAGGAGGAGGAGGAAGGGG
TGGCAGGAGGAGAAGAGCATAGAGGGGCTAATTCTAATAAGAGGGGAAAG
ACTGCGAGAAAATCACAGGATCAGCTGCGACAGGAGAGAAAGAGGAAGGA
TAAAAAAGTGTCTCCGTCCACGAAGTACAGCGCTCGTGCAGCGATGGCTG
CCGAGGATGAAGAGAAGGAGGAGGAGCAGCAGCAGCAGCCGGATAGTCCC
CTGGCGGCAATGGCTCTGTCCACATCTACCATCAATCTTCGTACCCGAAG
ACAAACTTCAGAAGTAGAGGCAGGTCCGTTGGAGGTGGGAGACGCCGTGT
ACGTCCAATCCAGGTTTTTAGTTGTCCCACGCGCGGTGGTAACGGCAGTG
GTGGAACCGGGAAAGTTGGAGAGGAAGTATGTAGCGGAAGAGAAGATAGA
AGAGAGGACATTTGACGTGATGTACGAAGAGGAAGGGGATGGGGTGGAGA
AGGTAGCAAAGATGCTGCCTCGGCAATATCTGACGCTGTTGGAAAAGGGC
GCTGGATTACTCGTGCCTTCCCCCTCCCCCACGCTCCAGCGGCGACAACA
GCAACAGTACCAGCAGCGTTTGAAGGATGTGAATGCCTCGAAAAAGTACA
GTGCACGGGTGGCCATGGCTGCGGAGGAAGTGGAAGAGGCGGACGAGCAG
GGGCAGGAGCAGGAGTTGCAGAAAGGGAGAAAGAGGATCAAGATTGCTGC
GACTACTACGCAAGAGGAGCAGGGGAAGGAAGAGGAAGAGGGTGGGGAGA
AGGACACCTCACCCAAGCGTAGCGCTCGAGAGTTTTGGACGGAGCCTCAG
ACACAAGAACCCATGACGCAATTTCCGGAGGGCGAGGAGGAACAGGAAGG
TGGGGGAGAATGTGAGACGGAGGACCAAGAAAACCAGGACAGTAACGGAC
GCAAGGAGGAGGGGGGAGAGGAAGCACAAGGGGGGGGAAAAGGGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAATCGGGGAAGATGG
AAGAGATTGAAAGCGTGAGCTCCGATACACGGGGTAGGGGGTCGTGGATC
TCGCCGTTGCAGGCCCCGTTCGGAATGCTGAGGCGCGTGCTGGTGGGTGG
AAAGACACAGACTTAG

Synonyms

Publications