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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr16 | genome | chr16:392487..394903 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G01270.2 vs.
Match: EWM24032.1 (Casein kinase II, regulatory subunit, alpha-helical [Nannochloropsis gaditana]) HSP 1 Score: 392.5 bits (1007), Expect = 2.400e-105 Identity = 284/565 (50.27%), Postives = 348/565 (61.59%), Query Frame = 0
Query: 1 MPRSGDGKAGSGCTVSAGQEDGR-KEKIGGQKGQEEALHPLPSASTNSTNTSSSSSSSSFSSSSSSSSTGQDATKGELFVVQYETAEDHAQRKDGSRCIGSSSASGSGSRSTAVTGPEEPADVPPPSPALVIAPVVGQGDSLALQLQASPTPSGKSRGDINAGSRDSS---YGSDRSGLDSVTHGVCVGGAGGRADATQVGAMLKVTGGTNAA-EKVQPREQQQQQAQEQQQSTAMLAPRVPVPP-----SLVPVQ---RECEELRSEEEDLSASEEEEEEEEEE------------EEDEDEDEEEEEETSWVNWYVNLKGNEFLCEVDEEYIQDDFNLTGLSSLVPYYDYALDVVSDVELPIESMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKFQASHFGRCPRVFCGMQPVLPVGQADHPRVSTVNVYCPKCQDIFLPRSTRHAVMDGAYFGTTFAHLFLLTHPESIPTRPEQAYVPRIYGFKINAESVYFSRARQREGEERERAGGGGTGLARGGNASGAGVGGRGGGGGRRPSSAAAAVGRPPQLGTGGGGG 541
M R GD S V G+E+ R +E+ + Q+ + HPL STNST+T +SSSS+ ++++ ++ G ++ G + E R DG + SGS STA TG +P V P G+ S + S G+S G +G G G + V RA G V+GGT + E+ + +++ + QQ L RVP+PP + P R +E +SE EDLS S+EEEEEEEEE EE+E+E+EEEEEE SWV+WYV+LKGNEF+CEVDEEYIQDDFNLTGLSSLVPYYDYALD+V DVELPIESMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEK+++S FGRCPR CG QPVLP+G ADHPRVSTVNV+CP+C+D+F+PRSTRHA MDGAYFGTTFAHLFLLTHPE+IP EQ+YVPRIYGFKINA+S Y++ AR+RE EERER G GAG GG G GR P S+ A + R Q+ G G
Sbjct: 1 MRRYGD----STRNVGVGKEEERGRERSKELEHQDGSSHPLALTSTNSTSTPTSSSSNGKGNNNAHATKGPQSSGGG------KNEEARLSRNDGGE------SCSSGSCSTAATGEATTLSLPTVVSGSVPLPAGGRTCSGQISPGTSCVKEGRSGGGAESGRTGCERREQGPTTRGEEWAARNVSTPIDAERAGLRAKGGGRMVSGGTGCSGERPHGPGKDREECERLQQEE--LQRRVPIPPPSRSETTPPAPTGWRGSKEQKSEMEDLSRSDEEEEEEEEEVEEEEEEEEEDEEEEEEEEEEEEEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIESMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAG-----------RGAGGGGGERGEGRAPLSSTAIMRRVRQMVRDGRDG 536
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G01270.2 ID=NO16G01270.2|Name=NO16G01270.2|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp
GGTCGAACAGGAATCAAAATTGCCCCATCCCCGACACTATAATTGCCTGC
TGAAACGAACGAATTCATTCTTCACACGATTAAGTGTCGAGCAGCCTGGT
GGACGGGTGGATAGGGGAGGAAGGGTTTGCGGAGGCACCTCGGTGATGTT
GACTCGAGCCCTGCGCCCTCCTCCCTCACACTTCACTGTGTATGGCATCA
TCATCATCATCATCTCACTGTTAAGTCTACGCGTCGACGTGCGATTCCAT
GCCCATCCAAAATCCAAACAACACACCTATCCCTACATGAAACGACCACA
GACTCATACACAGCCACATGCCAAGAAGTGGGGACGGCAAGGCGGGCAGC
GGCTGCACGGTCTCGGCAGGACAAGAAGACGGGAGGAAAGAGAAGATAGG
TGGCCAGAAGGGGCAAGAGGAGGCACTCCACCCCCTCCCGAGCGCCTCCA
CCAACAGTACCAACACGAGCAGCAGCAGCAGTAGTAGTAGTTTTAGCAGC
AGTAGCAGCAGCAGCAGCACTGGCCAGGATGCCACCAAGGGCGAGCTATT
CGTCGTCCAGTATGAGACAGCAGAAGACCACGCCCAACGAAAAGACGGCA
GCCGCTGCATAGGTAGCAGCAGTGCCAGTGGAAGCGGCAGCCGCAGCACA
GCAGTAACAGGCCCAGAAGAACCGGCTGATGTACCACCACCTTCTCCAGC
GCTGGTGATCGCTCCTGTTGTGGGGCAAGGAGATTCGTTAGCGCTGCAGC
TGCAAGCTTCTCCTACCCCGAGTGGGAAGAGTAGGGGGGATATTAATGCT
GGCAGCAGGGACAGCAGCTATGGGAGTGATAGGTCTGGGCTTGATTCAGT
CACGCATGGGGTGTGTGTGGGTGGAGCAGGGGGAAGGGCCGATGCCACCC
AGGTAGGTGCAATGCTGAAGGTGACAGGCGGCACAAATGCAGCGGAGAAG
GTACAGCCACGAGAGCAGCAACAACAGCAGGCACAAGAGCAGCAGCAGTC
GACAGCAATGTTGGCGCCGCGAGTGCCGGTGCCGCCATCACTGGTGCCGG
TGCAGCGGGAGTGTGAGGAGCTAAGAAGTGAGGAGGAAGATTTGAGTGCG
TCGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGACGA
GGATGAGGAAGAGGAGGAGGAAACAAGTTGGGTCAATTGGTATGTCAATT
TGAAGGGAAATGAGTTTTTGTGCGAGGTGGATGAGGAGTACATTCAGGAT
GATTTCAATTTGACGGGGCTAAGTAGTTTGGTACCGTATTACGACTATGC
CTTGGATGTGGTGTCGGACGTCGAGTTGCCGATAGAGAGCATGACGGAGG
AGCAGCATGAGCTGGTCGAGGGGGCGGCGGAGATGCTGTACGGGTTGATT
CATGCGAGATATATTTTGACGAGTCGAGGCTTGCATGCCATGAATGAAAA
ATTCCAAGCTTCCCATTTCGGCCGTTGCCCCCGAGTGTTTTGCGGCATGC
AGCCCGTCCTCCCTGTAGGGCAAGCCGACCATCCCCGTGTCAGTACCGTC
AACGTGTACTGTCCAAAATGCCAGGACATCTTCCTTCCCCGCTCCACCCG
CCACGCCGTCATGGACGGGGCCTATTTTGGCACCACTTTCGCCCATCTCT
TCCTCCTTACTCACCCGGAATCCATCCCTACGAGGCCCGAACAAGCGTAC
GTCCCCAGGATATATGGCTTCAAAATCAATGCAGAAAGTGTGTATTTTTC
CAGGGCACGGCAAAGGGAGGGGGAGGAGAGGGAGAGGGCAGGAGGGGGAG
GAACAGGGTTGGCGAGAGGAGGAAACGCTAGTGGTGCTGGTGTTGGAGGA
AGGGGAGGAGGCGGAGGACGAAGGCCGTCGTCGGCTGCGGCGGCGGTGGG
GAGGCCACCGCAGTTGGGGACGGGGGGGGGAGGAGGATGTTGCGATAATG
CGACTTTTGAGACAAGGGAGCCAGAGGGAGAGAGAAATACCAACAATTGG
ATGGTACAGAAAGGCATACAGGCGGATGGAAGAGAGGATGTTGAACAGGG
CTTTGGAAGGTGGTGGTGTAGTATAAGAAACAAGAGATGGTGGAAGGGAT
TCGGGGCGGTGTGGGGAGATGTGGAGGTAGTGCACCGGTCTAGGCCACGA
CCAAAACCCGAAAAGGCATGGCTGGTTTTGCAGAAGAAGGAAATATAAAA
GAATCAACAACAAAAACCGTTTTCATGCA back to topprotein sequence of NO16G01270.2 >NO16G01270.2-protein ID=NO16G01270.2-protein|Name=NO16G01270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MPRSGDGKAGSGCTVSAGQEDGRKEKIGGQKGQEEALHPLPSASTNSTNT
SSSSSSSSFSSSSSSSSTGQDATKGELFVVQYETAEDHAQRKDGSRCIGS
SSASGSGSRSTAVTGPEEPADVPPPSPALVIAPVVGQGDSLALQLQASPT
PSGKSRGDINAGSRDSSYGSDRSGLDSVTHGVCVGGAGGRADATQVGAML
KVTGGTNAAEKVQPREQQQQQAQEQQQSTAMLAPRVPVPPSLVPVQRECE
ELRSEEEDLSASEEEEEEEEEEEEDEDEDEEEEEETSWVNWYVNLKGNEF
LCEVDEEYIQDDFNLTGLSSLVPYYDYALDVVSDVELPIESMTEEQHELV
EGAAEMLYGLIHARYILTSRGLHAMNEKFQASHFGRCPRVFCGMQPVLPV
GQADHPRVSTVNVYCPKCQDIFLPRSTRHAVMDGAYFGTTFAHLFLLTHP
ESIPTRPEQAYVPRIYGFKINAESVYFSRARQREGEERERAGGGGTGLAR
GGNASGAGVGGRGGGGGRRPSSAAAAVGRPPQLGTGGGGGCCDNATFETR
EPEGERNTNNWMVQKGIQADGREDVEQGFGRWWCSIRNKRWWKGFGAVWG
DVEVVHRSRPRPKPEKAWLVLQKKEI* back to topmRNA from alignment at chr16:392487..394903- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G01270.2 ID=NO16G01270.2|Name=NO16G01270.2|organism=Nannochloropsis oceanica|type=mRNA|length=2417bp|location=Sequence derived from alignment at chr16:392487..394903- (Nannochloropsis oceanica)
GGTCGAACAGGAATCAAAATTGCCCCATCCCCGACACTATAATTGCCTGC
TGAAACGAACGAATTCATTCTTCACACGATTAAGTGTCGAGCAGCCTGGT
GGACGGGTGGATAGGGGAGGAAGGGTTTGCGGAGGCACCTCGGTGATGTT
GACTCGAGCCCTGCGCCCTCCTCCCTCACACTTCACTGTGTATGGCATCA
TCATCATCATCATCTCACTGTTAAGTCTACGCGTCGACGTGCGATTCCAT
GCCCATCCAAAATCCAAACAACACACCTATCCCTACATGAAACGACCACA
GACTCATACACAGCCACATGCCAAGAAGTGGGGACGGCAAGGCGGGCAGC
GGCTGCACGGTCTCGGCAGGACAAGAAGACGGGAGGAAAGAGAAGATAGG
TGGCCAGAAGGGGCAAGAGGAGGCACTCCACCCCCTCCCGAGCGCCTCCA
CCAACAGTACCAACACGAGCAGCAGCAGCAGTAGTAGTAGTTTTAGCAGC
AGTAGCAGCAGCAGCAGCACTGGCCAGGATGCCACCAAGGGCGAGCTATT
CGTCGTCCAGTATGAGACAGCAGAAGACCACGCCCAACGAAAAGACGGCA
GCCGCTGCATAGGTAGCAGCAGTGCCAGTGGAAGCGGCAGCCGCAGCACA
GCAGTAACAGGCCCAGAAGAACCGGCTGATGTACCACCACCTTCTCCAGC
GCTGGTGATCGCTCCTGTTGTGGGGCAAGGAGATTCGTTAGCGCTGCAGC
TGCAAGCTTCTCCTACCCCGAGTGGGAAGAGTAGGGGGGATATTAATGCT
GGCAGCAGGGACAGCAGCTATGGGAGTGATAGGTCTGGGCTTGATTCAGT
CACGCATGGGGTGTGTGTGGGTGGAGCAGGGGGAAGGGCCGATGCCACCC
AGGTAGGTGCAATGCTGAAGGTGACAGGCGGCACAAATGCAGCGGAGAAG
GTACAGCCACGAGAGCAGCAACAACAGCAGGCACAAGAGCAGCAGCAGTC
GACAGCAATGTTGGCGCCGCGAGTGCCGGTGCCGCCATCACTGGTGCCGG
TGCAGCGGGAGTGTGAGGAGCTAAGAAGTGAGGAGGAAGATTTGAGTGCG
TCGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGACGA
GGATGAGGAAGAGGAGGAGGAAACAAGTTGGGTCAATTGGTATGTCAATT
TGAAGGGAAATGAGTTTTTGTGCGAGGTGGATGAGGAGTACATTCAGGAT
GATTTCAATTTGACGGGGCTAAGTAGTTTGGTACCGTATTACGACTATGC
CTTGGATGTGGTGTCGGACGTCGAGTTGCCGATAGAGAGCATGACGGAGG
AGCAGCATGAGCTGGTCGAGGGGGCGGCGGAGATGCTGTACGGGTTGATT
CATGCGAGATATATTTTGACGAGTCGAGGCTTGCATGCCATGGTACGTGC
GTGTGTGAACCTCTATTTCCCTCTTATGTACCTGACCTCCCTCGTCGTCT
TTCCGTCTCCAACTCTTCTCCCTCACCATTTTTTCTTCATCTCTCTCACT
CTTCCAACTCTTCCTACTTCTCGACTCTAATCCCATCTTTCCACCCGCCC
TCCCTCCCCCTCCCTTCCCCCACATAACAGAATGAAAAATTCCAAGCTTC
CCATTTCGGCCGTTGCCCCCGAGTGTTTTGCGGCATGCAGCCCGTCCTCC
CTGTAGGGCAAGCCGACCATCCCCGTGTCAGTACCGTCAACGTGTACTGT
CCAAAATGCCAGGACATCTTCCTTCCCCGCTCCACCCGCCACGCCGTCAT
GGACGGGGCCTATTTTGGCACCACTTTCGCCCATCTCTTCCTCCTTACTC
ACCCGGAATCCATCCCTACGAGGCCCGAACAAGCGTACGTCCCCAGGATA
TATGGCTTCAAAATCAATGCAGAAAGTGTGTATTTTTCCAGGGCACGGCA
AAGGGAGGGGGAGGAGAGGGAGAGGGCAGGAGGGGGAGGAACAGGGTTGG
CGAGAGGAGGAAACGCTAGTGGTGCTGGTGTTGGAGGAAGGGGAGGAGGC
GGAGGACGAAGGCCGTCGTCGGCTGCGGCGGCGGTGGGGAGGCCACCGCA
GTTGGGGACGGGGGGGGGAGGAGGATGTTGCGATAATGCGACTTTTGAGA
CAAGGGAGCCAGAGGGAGAGAGAAATACCAACAATTGGATGGTACAGAAA
GGCATACAGGCGGATGGAAGAGAGGATGTTGAACAGGGCTTTGGAAGGTG
GTGGTGTAGTATAAGAAACAAGAGATGGTGGAAGGGATTCGGGGCGGTGT
GGGGAGATGTGGAGGTAGTGCACCGGTCTAGGCCACGACCAAAACCCGAA
AAGGCATGGCTGGTTTTGCAGAAGAAGGAAATATAAAAGAATCAACAACA
AAAACCGTTTTCATGCA back to topCoding sequence (CDS) from alignment at chr16:392487..394903- >NO16G01270.2 ID=NO16G01270.2|Name=NO16G01270.2|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr16:392487..394903- (Nannochloropsis oceanica)
ATGCCAAGAAGTGGGGACGGCAAGGCGGGCAGCGGCTGCACGGTCTCGGC
AGGACAAGAAGACGGGAGGAAAGAGAAGATAGGTGGCCAGAAGGGGCAAG
AGGAGGCACTCCACCCCCTCCCGAGCGCCTCCACCAACAGTACCAACACG
AGCAGCAGCAGCAGTAGTAGTAGTTTTAGCAGCAGTAGCAGCAGCAGCAG
CACTGGCCAGGATGCCACCAAGGGCGAGCTATTCGTCGTCCAGTATGAGA
CAGCAGAAGACCACGCCCAACGAAAAGACGGCAGCCGCTGCATAGGTAGC
AGCAGTGCCAGTGGAAGCGGCAGCCGCAGCACAGCAGTAACAGGCCCAGA
AGAACCGGCTGATGTACCACCACCTTCTCCAGCGCTGGTGATCGCTCCTG
TTGTGGGGCAAGGAGATTCGTTAGCGCTGCAGCTGCAAGCTTCTCCTACC
CCGAGTGGGAAGAGTAGGGGGGATATTAATGCTGGCAGCAGGGACAGCAG
CTATGGGAGTGATAGGTCTGGGCTTGATTCAGTCACGCATGGGGTGTGTG
TGGGTGGAGCAGGGGGAAGGGCCGATGCCACCCAGGTAGGTGCAATGCTG
AAGGTGACAGGCGGCACAAATGCAGCGGAGAAGGTACAGCCACGAGAGCA
GCAACAACAGCAGGCACAAGAGCAGCAGCAGTCGACAGCAATGTTGGCGC
CGCGAGTGCCGGTGCCGCCATCACTGGTGCCGGTGCAGCGGGAGTGTGAG
GAGCTAAGAAGTGAGGAGGAAGATTTGAGTGCGTCGGAAGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGATGAAGACGAGGATGAGGAAGAGGAGG
AGGAAACAAGTTGGGTCAATTGGTATGTCAATTTGAAGGGAAATGAGTTT
TTGTGCGAGGTGGATGAGGAGTACATTCAGGATGATTTCAATTTGACGGG
GCTAAGTAGTTTGGTACCGTATTACGACTATGCCTTGGATGTGGTGTCGG
ACGTCGAGTTGCCGATAGAGAGCATGACGGAGGAGCAGCATGAGCTGGTC
GAGGGGGCGGCGGAGATGCTGTACGGGTTGATTCATGCGAGATATATTTT
GACGAGTCGAGGCTTGCATGCCATGAATGAAAAATTCCAAGCTTCCCATT
TCGGCCGTTGCCCCCGAGTGTTTTGCGGCATGCAGCCCGTCCTCCCTGTA
GGGCAAGCCGACCATCCCCGTGTCAGTACCGTCAACGTGTACTGTCCAAA
ATGCCAGGACATCTTCCTTCCCCGCTCCACCCGCCACGCCGTCATGGACG
GGGCCTATTTTGGCACCACTTTCGCCCATCTCTTCCTCCTTACTCACCCG
GAATCCATCCCTACGAGGCCCGAACAAGCGTACGTCCCCAGGATATATGG
CTTCAAAATCAATGCAGAAAGTGTGTATTTTTCCAGGGCACGGCAAAGGG
AGGGGGAGGAGAGGGAGAGGGCAGGAGGGGGAGGAACAGGGTTGGCGAGA
GGAGGAAACGCTAGTGGTGCTGGTGTTGGAGGAAGGGGAGGAGGCGGAGG
ACGAAGGCCGTCGTCGGCTGCGGCGGCGGTGGGGAGGCCACCGCAGTTGG
GGACGGGGGGGGGAGGAGGATGTTGCGATAATGCGACTTTTGAGACAAGG
GAGCCAGAGGGAGAGAGAAATACCAACAATTGGATGGTACAGAAAGGCAT
ACAGGCGGATGGAAGAGAGGATGTTGAACAGGGCTTTGGAAGGTGGTGGT
GTAGTATAAGAAACAAGAGATGGTGGAAGGGATTCGGGGCGGTGTGGGGA
GATGTGGAGGTAGTGCACCGGTCTAGGCCACGACCAAAACCCGAAAAGGC
ATGGCTGGTTTTGCAGAAGAAGGAAATATAA back to top
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