NO16G01170.1, NO16G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01170.1
Unique NameNO16G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1681
Alignment locationchr16:365982..367662 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:365982..367662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01170.1 vs.
Match: EWM23997.1 (trna (guanine-n7-)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 468.4 bits (1204), Expect = 2.600e-128
Identity = 273/479 (56.99%), Postives = 338/479 (70.56%), Query Frame = 0 
Query:    1 MRDKLLVSSSSSGK---LLCAYAGEQVYLIDTASQSSSKIIALPAPSQPAGKADASAPPITALGQVEAVALTADGNKAAALYRHKVLALWDIRDSTAPALLAHRLLPKKAFSLLFAQLEVP--------GNVQKEDTILVNDKVGDVRAYFATTELLSKSSAFLLGHTASVGTCLDLSPDGTCLASGDRDEKVRLSKFPCTLMIDAYLTGHDNFISSVTFIRRGTAVLTGSGDGTLALWDAQTGAEKVKRVLPFTLKVKNETQREEEGKEEGSNEPSKTRNKATTVPCAVAINREESLAIVTLLGSAELLVYSLPALELVQTLKLPSPPLGAVWLEKGGQ-EGGKEEVLYVTVGAPEYLMAYVLIGN------ELQAQIEEHSVVVAVRSFGMKAGLESELTVDEGDEGFLGGMTKENLEVRFEWNSRQRKEEHVEKARQKRQEKRHRERDERIAGMGDGGK-----KGKRGGGEGGGE 457
            MRDKLLV++  SG    LLCAYAGE V+LIDT  +    ++ALP P   A   D +      LGQVEA+ALT +G +AAALYRHKVLALWD  DS +P LL+HRLLPKKAF+LLFA+L+ P        G   +ED +LVNDKVGDVR Y AT E+L K+SAFLLGHTASVGTCLDLSPDG  LA+GDRDEKVR+S FPCT++I+ YL GH+ F+SSV F+  G  VLTGSGD TLALWDA TG E V+  LP  L+ +   + E+ G E G    + +++ +T VPCAVA+  + +LA VTLLG ++LLVY+LPAL L+QTL LPS P+GA +++   + EG    VLYVTVGAPEYL+AY +  +       L+A  E   V+V+VR FG+K GL++ LTVDEGDE FLGGMTKENL VR +WNSRQR+EEH E+AR+KRQ+KRHRERD  +A  G  G+     K K   G   GE
Sbjct:    1 MRDKLLVAAKCSGGAGILLCAYAGEDVFLIDT--KQPGNVVALPVPDLSAASVDGTESNADGLGQVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRATAEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVENGAKVLTGSGDQTLALWDAHTGCEVVRESLP-PLEGELVAEGEQLGPENGERGRNSSKSPSTIVPCAVAVTSDSALAAVTLLGQSKLLVYALPALSLIQTLDLPSVPVGAAFMDNPEEAEGEVRRVLYVTVGAPEYLLAYRVTKDGEGGAWRLEAAEEGTGVLVSVRLFGLKMGLKASLTVDEGDEDFLGGMTKENLTVRCDWNSRQRREEHAERARRKRQDKRHRERDGAVAEEGKEGEADLPAKAKPRTGTQSGE 476
The following BLAST results are available for this feature:
BLAST of NO16G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23997.12.600e-12856.99trna (guanine-n7-)-methyltransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01170NO16G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01170.1NO16G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01170.1.cds1NO16G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01170.1 ID=NO16G01170.1|Name=NO16G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
CACAACACGACATTCGCAGTCAGTCAGCGAACGCGAGCGATAATCATAGG
GCTCGTCCGCTAGCCATTGCTACGGCCTCTTGCAAAAACATCAAACACAT
ATTATGCATGTAATCTCTCTCTCCCTTTTTCTTCATCTTTGTCCACGATG
CGAATTAGGAAAAAAAGCCAACTTGATCGGCGCGCTCGCGCCCCTTCGCG
GAATAACCTCCCATTAATCTTATCCACCGCCCACAAAACCTACAATCCGA
ACCCATAGCAGCCCACACCACTGCACCAACTTAGCCATGCGTGACAAGCT
CTTAGTTTCGAGCAGTAGCAGCGGCAAGCTTCTTTGTGCCTACGCAGGGG
AGCAAGTTTACCTCATCGACACAGCCAGCCAGAGCAGCAGCAAAATCATA
GCCTTGCCTGCCCCTAGCCAACCCGCCGGCAAAGCCGATGCTTCCGCGCC
GCCTATCACGGCATTGGGGCAAGTGGAGGCCGTGGCCCTGACTGCCGATG
GTAACAAAGCGGCGGCGCTGTATCGGCACAAGGTCCTGGCCTTGTGGGAC
ATCCGCGACAGCACCGCTCCCGCCCTCCTTGCCCATCGTCTCTTGCCCAA
AAAGGCATTTTCCCTTCTCTTTGCTCAACTAGAAGTACCAGGTAACGTGC
AAAAAGAAGACACCATCCTTGTCAATGACAAGGTGGGGGATGTGCGTGCC
TATTTTGCCACTACCGAGCTGCTGTCCAAATCGTCAGCGTTTTTGCTGGG
CCACACTGCCTCTGTTGGAACCTGCCTCGACCTCTCTCCTGATGGCACAT
GTCTCGCGTCGGGGGACCGAGACGAAAAAGTTCGTCTTTCGAAGTTTCCT
TGTACGTTGATGATTGATGCGTATTTGACAGGGCATGATAACTTTATAAG
CTCCGTGACATTCATTCGGAGGGGTACGGCGGTGCTGACGGGGAGTGGGG
ACGGAACCCTTGCCTTGTGGGATGCCCAAACAGGGGCTGAGAAAGTAAAG
CGTGTCCTTCCCTTCACCTTAAAAGTGAAAAATGAGACCCAAAGGGAGGA
GGAGGGGAAGGAGGAGGGAAGTAACGAGCCTAGCAAGACGAGGAACAAGG
CAACGACCGTACCATGCGCCGTGGCCATTAATCGCGAGGAAAGTCTCGCA
ATTGTCACTCTCTTGGGATCGGCTGAGTTGCTCGTTTATTCGTTACCGGC
TCTAGAGCTGGTGCAGACTTTGAAATTACCCTCCCCACCGTTGGGGGCTG
TGTGGTTGGAGAAGGGAGGGCAGGAGGGCGGGAAGGAGGAAGTGCTGTAT
GTCACGGTGGGCGCACCGGAGTATTTGATGGCTTACGTTCTTATAGGAAA
TGAGCTACAGGCACAAATAGAGGAACACTCAGTGGTTGTAGCGGTGAGAT
CGTTCGGAATGAAAGCGGGCTTAGAGAGTGAATTGACGGTCGATGAAGGC
GACGAGGGATTCTTAGGGGGGATGACCAAGGAAAATTTGGAGGTGAGGTT
TGAGTGGAACAGCCGCCAAAGAAAGGAGGAGCACGTGGAGAAGGCGCGAC
AGAAGCGACAGGAGAAGAGACACAGGGAGAGAGATGAGAGGATTGCGGGG
ATGGGGGACGGAGGGAAGAAGGGGAAGCGGGGGGGAGGAGAGGGAGGGGG
GGAGGCCAGCGCGATATCGAAGGAGGGGTAA
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protein sequence of NO16G01170.1

>NO16G01170.1-protein ID=NO16G01170.1-protein|Name=NO16G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MRDKLLVSSSSSGKLLCAYAGEQVYLIDTASQSSSKIIALPAPSQPAGKA
DASAPPITALGQVEAVALTADGNKAAALYRHKVLALWDIRDSTAPALLAH
RLLPKKAFSLLFAQLEVPGNVQKEDTILVNDKVGDVRAYFATTELLSKSS
AFLLGHTASVGTCLDLSPDGTCLASGDRDEKVRLSKFPCTLMIDAYLTGH
DNFISSVTFIRRGTAVLTGSGDGTLALWDAQTGAEKVKRVLPFTLKVKNE
TQREEEGKEEGSNEPSKTRNKATTVPCAVAINREESLAIVTLLGSAELLV
YSLPALELVQTLKLPSPPLGAVWLEKGGQEGGKEEVLYVTVGAPEYLMAY
VLIGNELQAQIEEHSVVVAVRSFGMKAGLESELTVDEGDEGFLGGMTKEN
LEVRFEWNSRQRKEEHVEKARQKRQEKRHRERDERIAGMGDGGKKGKRGG
GEGGGEASAISKEG*
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mRNA from alignment at chr16:365982..367662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01170.1 ID=NO16G01170.1|Name=NO16G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at chr16:365982..367662- (Nannochloropsis oceanica)
CACAACACGACATTCGCAGTCAGTCAGCGAACGCGAGCGATAATCATAGG
GCTCGTCCGCTAGCCATTGCTACGGCCTCTTGCAAAAACATCAAACACAT
ATTATGCATGTAATCTCTCTCTCCCTTTTTCTTCATCTTTGTCCACGATG
CGAATTAGGAAAAAAAGCCAACTTGATCGGCGCGCTCGCGCCCCTTCGCG
GAATAACCTCCCATTAATCTTATCCACCGCCCACAAAACCTACAATCCGA
ACCCATAGCAGCCCACACCACTGCACCAACTTAGCCATGCGTGACAAGCT
CTTAGTTTCGAGCAGTAGCAGCGGCAAGCTTCTTTGTGCCTACGCAGGGG
AGCAAGTTTACCTCATCGACACAGCCAGCCAGAGCAGCAGCAAAATCATA
GCCTTGCCTGCCCCTAGCCAACCCGCCGGCAAAGCCGATGCTTCCGCGCC
GCCTATCACGGCATTGGGGCAAGTGGAGGCCGTGGCCCTGACTGCCGATG
GTAACAAAGCGGCGGCGCTGTATCGGCACAAGGTCCTGGCCTTGTGGGAC
ATCCGCGACAGCACCGCTCCCGCCCTCCTTGCCCATCGTCTCTTGCCCAA
AAAGGCATTTTCCCTTCTCTTTGCTCAACTAGAAGTACCAGGTAACGTGC
AAAAAGAAGACACCATCCTTGTCAATGACAAGGTGGGGGATGTGCGTGCC
TATTTTGCCACTACCGAGCTGCTGTCCAAATCGTCAGCGTTTTTGCTGGG
CCACACTGCCTCTGTTGGAACCTGCCTCGACCTCTCTCCTGATGGCACAT
GTCTCGCGTCGGGGGACCGAGACGAAAAAGTTCGTCTTTCGAAGTTTCCT
TGTACGTTGATGATTGATGCGTATTTGACAGGGCATGATAACTTTATAAG
CTCCGTGACATTCATTCGGAGGGGTACGGCGGTGCTGACGGGGAGTGGGG
ACGGAACCCTTGCCTTGTGGGATGCCCAAACAGGGGCTGAGAAAGTAAAG
CGTGTCCTTCCCTTCACCTTAAAAGTGAAAAATGAGACCCAAAGGGAGGA
GGAGGGGAAGGAGGAGGGAAGTAACGAGCCTAGCAAGACGAGGAACAAGG
CAACGACCGTACCATGCGCCGTGGCCATTAATCGCGAGGAAAGTCTCGCA
ATTGTCACTCTCTTGGGATCGGCTGAGTTGCTCGTTTATTCGTTACCGGC
TCTAGAGCTGGTGCAGACTTTGAAATTACCCTCCCCACCGTTGGGGGCTG
TGTGGTTGGAGAAGGGAGGGCAGGAGGGCGGGAAGGAGGAAGTGCTGTAT
GTCACGGTGGGCGCACCGGAGTATTTGATGGCTTACGTTCTTATAGGAAA
TGAGCTACAGGCACAAATAGAGGAACACTCAGTGGTTGTAGCGGTGAGAT
CGTTCGGAATGAAAGCGGGCTTAGAGAGTGAATTGACGGTCGATGAAGGC
GACGAGGGATTCTTAGGGGGGATGACCAAGGAAAATTTGGAGGTGAGGTT
TGAGTGGAACAGCCGCCAAAGAAAGGAGGAGCACGTGGAGAAGGCGCGAC
AGAAGCGACAGGAGAAGAGACACAGGGAGAGAGATGAGAGGATTGCGGGG
ATGGGGGACGGAGGGAAGAAGGGGAAGCGGGGGGGAGGAGAGGGAGGGGG
GGAGGCCAGCGCGATATCGAAGGAGGGGTAA
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Coding sequence (CDS) from alignment at chr16:365982..367662-

>NO16G01170.1 ID=NO16G01170.1|Name=NO16G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at chr16:365982..367662- (Nannochloropsis oceanica)
ATGCGTGACAAGCTCTTAGTTTCGAGCAGTAGCAGCGGCAAGCTTCTTTG
TGCCTACGCAGGGGAGCAAGTTTACCTCATCGACACAGCCAGCCAGAGCA
GCAGCAAAATCATAGCCTTGCCTGCCCCTAGCCAACCCGCCGGCAAAGCC
GATGCTTCCGCGCCGCCTATCACGGCATTGGGGCAAGTGGAGGCCGTGGC
CCTGACTGCCGATGGTAACAAAGCGGCGGCGCTGTATCGGCACAAGGTCC
TGGCCTTGTGGGACATCCGCGACAGCACCGCTCCCGCCCTCCTTGCCCAT
CGTCTCTTGCCCAAAAAGGCATTTTCCCTTCTCTTTGCTCAACTAGAAGT
ACCAGGTAACGTGCAAAAAGAAGACACCATCCTTGTCAATGACAAGGTGG
GGGATGTGCGTGCCTATTTTGCCACTACCGAGCTGCTGTCCAAATCGTCA
GCGTTTTTGCTGGGCCACACTGCCTCTGTTGGAACCTGCCTCGACCTCTC
TCCTGATGGCACATGTCTCGCGTCGGGGGACCGAGACGAAAAAGTTCGTC
TTTCGAAGTTTCCTTGTACGTTGATGATTGATGCGTATTTGACAGGGCAT
GATAACTTTATAAGCTCCGTGACATTCATTCGGAGGGGTACGGCGGTGCT
GACGGGGAGTGGGGACGGAACCCTTGCCTTGTGGGATGCCCAAACAGGGG
CTGAGAAAGTAAAGCGTGTCCTTCCCTTCACCTTAAAAGTGAAAAATGAG
ACCCAAAGGGAGGAGGAGGGGAAGGAGGAGGGAAGTAACGAGCCTAGCAA
GACGAGGAACAAGGCAACGACCGTACCATGCGCCGTGGCCATTAATCGCG
AGGAAAGTCTCGCAATTGTCACTCTCTTGGGATCGGCTGAGTTGCTCGTT
TATTCGTTACCGGCTCTAGAGCTGGTGCAGACTTTGAAATTACCCTCCCC
ACCGTTGGGGGCTGTGTGGTTGGAGAAGGGAGGGCAGGAGGGCGGGAAGG
AGGAAGTGCTGTATGTCACGGTGGGCGCACCGGAGTATTTGATGGCTTAC
GTTCTTATAGGAAATGAGCTACAGGCACAAATAGAGGAACACTCAGTGGT
TGTAGCGGTGAGATCGTTCGGAATGAAAGCGGGCTTAGAGAGTGAATTGA
CGGTCGATGAAGGCGACGAGGGATTCTTAGGGGGGATGACCAAGGAAAAT
TTGGAGGTGAGGTTTGAGTGGAACAGCCGCCAAAGAAAGGAGGAGCACGT
GGAGAAGGCGCGACAGAAGCGACAGGAGAAGAGACACAGGGAGAGAGATG
AGAGGATTGCGGGGATGGGGGACGGAGGGAAGAAGGGGAAGCGGGGGGGA
GGAGAGGGAGGGGGGGAGGCCAGCGCGATATCGAAGGAGGGGTAA
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Synonyms
Publications