NO16G01070.3, NO16G01070.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01070.3
Unique NameNO16G01070.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1108
Alignment locationchr16:338205..339548 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:338205..339548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01070.3 vs.
Match: EWM24025.1 (clusterin-associated protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 127.9 bits (320), Expect = 3.400e-26
Identity = 78/141 (55.32%), Postives = 112/141 (79.43%), Query Frame = 0 
Query:    3 TDDLPTLRQTLQVLEQQHAALDAEEQMIESEIKKKKIEVNRNEARLKSLQTVSPAFMGEYTLLEEELEKQYEVYVRRFRNVEYLEHELDRLRVAEHAKQARAERRLRRMQQEVQAEEERR--LGRGGKKAGVQGGSKGGGG 142
            T+D+P+LR+TL+ L++QHAALDAEE+M+E ++++KK E+ R+EARL+SLQ+V P+ + E+ +LE+EL +QY+ YVR ++N+++LE E+D LR AE AKQ+RAERR+R +Q+ VQ EEERR  L  GG   G Q G  GGGG
Sbjct:    7 TEDVPSLRRTLESLQRQHAALDAEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQELVAGGGGPGKQEG--GGGG 145
The following BLAST results are available for this feature:
BLAST of NO16G01070.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24025.13.400e-2655.32clusterin-associated protein 1 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01070NO16G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01070.3NO16G01070.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01070.3.cds1NO16G01070.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01070.3.cds2NO16G01070.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01070.3.cds3NO16G01070.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01070.3 ID=NO16G01070.3|Name=NO16G01070.3|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp
AGGCCGTAATATCAGCATGAGGACAGATGACTTGCCGACGCTCCGCCAAA
CGTTGCAGGTTCTTGAGCAACAGCACGCGGCGCTCGATGCAGAGGAGCAG
ATGATCGAGTCTGAGATCAAAAAGAAGAAAATTGAGGTGAACCGGAACGA
GGCCCGGCTCAAGAGCTTGCAGACCGTAAGCCCGGCATTCATGGGAGAAT
ACACACTCCTCGAAGAAGAGCTCGAGAAACAGTATGAGGTGTACGTGCGG
CGTTTCCGGAACGTGGAGTACTTAGAGCATGAACTTGACAGGCTCCGCGT
GGCGGAACACGCCAAGCAAGCGCGCGCGGAGAGGCGGCTTAGAAGGATGC
AACAAGAAGTGCAGGCAGAGGAGGAACGAAGGCTGGGAAGAGGTGGAAAA
AAGGCAGGAGTTCAAGGTGGAAGCAAAGGAGGTGGCGGTGTGTTTGCCAA
GGTACGTTTTGGGAAGTGGTTGTATTTTGGCGCAGGGGAGGAGGAATCCT
CACTTCGCACTCTTCATCTATACAGGATTACGACTACCGTTTGGGGGGCA
ACAGCAATAAAGCCAGCAGCAGTAGCATAAGGAGAGCAAGAAGCACGGCC
AGGTACGTAAGATGGAAAAGGGGAAAATTGCGGGAAGTGCATTAATTCAT
GTGGCCTCTCCTTGCTTCCCATTCCCCTCTTCTTCCAGATCCGTCATCCG
ATCCCAACAACCATCACCACCACCCTCCTCCTCTTCAAGCCATCAACCAG
TGGAACACCTGTATCAATACCCACAGCACGCTCAAATCTTGGGACCAGGC
AATCGGAAGGCCTCCACCGCCTCTTCAATTCTTGACATGGGGACTAAGCG
TTCCTCGCCTTCCTCATTGGGTGAGGACACGGAAGGGACTTTGGAGGGTG
GGGGGAAGAGGATAGTGAGGAAGAAGAGGAGATAGAGGAGGATGATTCGT
CTTTGTTGCCAGCGGAGGAGGAAGAGGATGAGCAGGACGACGAGGAAAGG
GAAAAGGGGACAAAGGGGGGGGAGGGCTTTTACCACCAGATGGAGGAAGA
CGATTTTTGAGAAGACAGCGAGCTAGCATGCAAAGAAAATAATGGTAGAA
GTTGTAGA
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protein sequence of NO16G01070.3

>NO16G01070.3-protein ID=NO16G01070.3-protein|Name=NO16G01070.3|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MRTDDLPTLRQTLQVLEQQHAALDAEEQMIESEIKKKKIEVNRNEARLKS
LQTVSPAFMGEYTLLEEELEKQYEVYVRRFRNVEYLEHELDRLRVAEHAK
QARAERRLRRMQQEVQAEEERRLGRGGKKAGVQGGSKGGGGVFAKVRFGK
WLYFGAGEEESSLRTLHLYRITTTVWGATAIKPAAVA*
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mRNA from alignment at chr16:338205..339548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01070.3 ID=NO16G01070.3|Name=NO16G01070.3|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at chr16:338205..339548- (Nannochloropsis oceanica)
AGGCCGTAATATCAGCATGAGGACAGATGACTTGCCGACGCTCCGCCAAA
CGTTGCAGGTTCTTGAGCAACAGCACGCGGCGCTCGATGCAGAGGAGCAG
ATGATCGAGTCTGAGGTACGTGGAGTGTTGGCATTGGGGTGGAATCGTCG
TGTCGTAGAAGTTCCTCGAACACATCAAAATCCGTCCACTCTTCCCGCAC
AGATCAAAAAGAAGAAAATTGAGGTGAACCGGAACGAGGCCCGGCTCAAG
AGCTTGCAGACCGTAAGGTACATATTTGTTTGTGGCGAGAAAGGAATAAA
TCGGGTCATTTTCTGATCACGCATTCTGGGGTGAGCCCCAACATAAGCTC
TCTTCCTTTCTTTCCCTCTCCCCTCTCACGGCCCCCATCTCACCCCTCTC
CCCTCGTACACGACAGCCCGGCATTCATGGGAGAATACACACTCCTCGAA
GAAGAGCTCGAGAAACAGTATGAGGTGTACGTGCGGCGTTTCCGGAACGT
GGAGTACTTAGAGCATGAACTTGACAGGCTCCGCGTGGCGGAACACGCCA
AGCAAGCGCGCGCGGAGAGGCGGCTTAGAAGGATGCAACAAGAAGTGCAG
GCAGAGGAGGAACGAAGGCTGGGAAGAGGTGGAAAAAAGGCAGGAGTTCA
AGGTGGAAGCAAAGGAGGTGGCGGTGTGTTTGCCAAGGTACGTTTTGGGA
AGTGGTTGTATTTTGGCGCAGGGGAGGAGGAATCCTCACTTCGCACTCTT
CATCTATACAGGATTACGACTACCGTTTGGGGGGCAACAGCAATAAAGCC
AGCAGCAGTAGCATAAGGAGAGCAAGAAGCACGGCCAGGTACGTAAGATG
GAAAAGGGGAAAATTGCGGGAAGTGCATTAATTCATGTGGCCTCTCCTTG
CTTCCCATTCCCCTCTTCTTCCAGATCCGTCATCCGATCCCAACAACCAT
CACCACCACCCTCCTCCTCTTCAAGCCATCAACCAGTGGAACACCTGTAT
CAATACCCACAGCACGCTCAAATCTTGGGACCAGGCAATCGGAAGGCCTC
CACCGCCTCTTCAATTCTTGACATGGGGACTAAGCGTTCCTCGCCTTCCT
CATTGGGTGAGGACACGGAAGGGACTTTGGAGGGTGGGGGGAAGAGGATA
GTGAGGAAGAAGAGGAGATAGAGGAGGATGATTCGTCTTTGTTGCCAGCG
GAGGAGGAAGAGGATGAGCAGGACGACGAGGAAAGGGAAAAGGGGACAAA
GGGGGGGGAGGGCTTTTACCACCAGATGGAGGAAGACGATTTTTGAGAAG
ACAGCGAGCTAGCATGCAAAGAAAATAATGGTAGAAGTTGTAGA
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Coding sequence (CDS) from alignment at chr16:338205..339548-

>NO16G01070.3 ID=NO16G01070.3|Name=NO16G01070.3|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr16:338205..339548- (Nannochloropsis oceanica)
ATGAGGACAGATGACTTGCCGACGCTCCGCCAAACGTTGCAGGTTCTTGA
GCAACAGCACGCGGCGCTCGATGCAGAGGAGCAGATGATCGAGTCTGAGA
TCAAAAAGAAGAAAATTGAGGTGAACCGGAACGAGGCCCGGCTCAAGAGC
TTGCAGACCGTAAGCCCGGCATTCATGGGAGAATACACACTCCTCGAAGA
AGAGCTCGAGAAACAGTATGAGGTGTACGTGCGGCGTTTCCGGAACGTGG
AGTACTTAGAGCATGAACTTGACAGGCTCCGCGTGGCGGAACACGCCAAG
CAAGCGCGCGCGGAGAGGCGGCTTAGAAGGATGCAACAAGAAGTGCAGGC
AGAGGAGGAACGAAGGCTGGGAAGAGGTGGAAAAAAGGCAGGAGTTCAAG
GTGGAAGCAAAGGAGGTGGCGGTGTGTTTGCCAAGGTACGTTTTGGGAAG
TGGTTGTATTTTGGCGCAGGGGAGGAGGAATCCTCACTTCGCACTCTTCA
TCTATACAGGATTACGACTACCGTTTGGGGGGCAACAGCAATAAAGCCAG
CAGCAGTAGCATAA
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Synonyms
Publications