NO16G01000.1, NO16G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01000.1
Unique NameNO16G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1167
Alignment locationchr16:320209..321555 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:320209..321555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01000.1 vs.
Match: EWM24015.1 (uroporphyrinogen-iii synthase [Nannochloropsis gaditana])

HSP 1 Score: 360.5 bits (924), Expect = 6.000e-96
Identity = 210/374 (56.15%), Postives = 266/374 (71.12%), Query Frame = 0 
Query:    4 LFCLALLLPAATDAFLLIPHLKQQHLQRPLAKTYQKHPR-HLQSLLTYLNT-GSITLLSAATADVHQGTSSSS---------SSSSSSSSSSSSSSSNPTEDLVVLTREAGKNDKLRKLLEAREFNILELPCIAHCHAEGHAQLQQTLETQVFDYIVITSPEAAQVFLEVAQTCPTYKPTNLVPIGEATGVLLKKAGAGIKFTPSKALAKVLAVELPEMEEEKVGGKEGGMKSRRTARVLYPASKRAAHTLEDGLYARGVCE---EGEREAQGEREGGSRLFEVTRLNTYDTVPAEWSEADESRAKACRVVTFASPSALKVWASRVGMEFNVACIGETTATAARQAGWKEERIFYPREAPGIEGWAAAVEEALQ 364
            LF    L+ +A  +FL +  L       P    +++ P  H Q    YLN  G       ++ +V++    S+         SS  +  SS+  S+S  + ++VVLTREAGKNDKLR++LE+++   LE+PCIAHCHAEG+AQL++TL+ + FDYIVITSPEAAQVFLE A+TC  YKPTNLV IGEATG LLKKAGA I FTPSKALAKVL VELPE+ EE+     GGM+ R+TA+VLYPASKRAA TLE+GL  RG+ E   E E E  G  +   RLF+V RLNTYDTVPA+W++ + S A++C VVTFASPSALKVWA+R+GM+FN+ACIGETTATAA   GW E RIFYP++APGI+GWA+AV +AL+
Sbjct:   16 LFSFVGLILSAAVSFLTVNVLASHAYLLPAPPQHEQQPSFHQQVHPNYLNKHGQTQSFGYSSVEVNRARMPSNMVGISQRIKSSLFAGRSSAPPSTSTSSRNVVVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEER-----GGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARLGMDFNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALE 384
The following BLAST results are available for this feature:
BLAST of NO16G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24015.16.000e-9656.15uroporphyrinogen-iii synthase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01000NO16G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01000.1NO16G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01000.1.cds1NO16G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01000.1.cds2NO16G01000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01000.1 ID=NO16G01000.1|Name=NO16G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ATGGGCGGACTCTTTTGCCTGGCACTCCTCCTTCCTGCAGCAACAGATGC
TTTTCTCCTCATACCACACCTCAAGCAACAGCACCTGCAAAGGCCCCTTG
CCAAGACCTATCAGAAGCACCCAAGACACCTTCAGAGCTTGCTAACATAT
CTAAACACCGGATCAATCACTCTCTTATCCGCGGCCACGGCAGACGTGCA
CCAAGGGACTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCAACCCTACCGAGGACCTCGTGGTACTCACCCGC
GAAGCCGGCAAGAATGACAAGCTTCGCAAACTTTTGGAAGCACGAGAGTT
CAATATCTTAGAGCTTCCATGTATTGCGCACTGCCATGCAGAGGGCCATG
CCCAGCTGCAACAAACATTGGAGACGCAGGTGTTTGACTACATCGTCATC
ACGTCACCAGAGGCCGCACAAGTCTTTCTAGAAGTTGCACAGACATGTCC
CACCTACAAACCGACGAATCTTGTTCCGATCGGCGAAGCGACAGGCGTGC
TGTTGAAAAAAGCAGGAGCAGGCATAAAATTCACGCCGTCAAAGGCCCTT
GCGAAAGTGCTTGCTGTGGAGCTACCAGAGATGGAGGAAGAGAAAGTGGG
AGGGAAAGAGGGAGGCATGAAGTCGAGAAGAACGGCAAGAGTACTTTATC
CGGCGTCTAAACGAGCGGCGCATACGTTGGAAGACGGATTGTATGCTAGG
GGTGTGTGCGAGGAGGGGGAAAGAGAGGCGCAGGGAGAGAGGGAGGGAGG
AAGCAGGTTGTTTGAGGTGACCAGGCTTAATACATATGACACAGTTCCTG
CAGAATGGAGTGAAGCCGACGAATCAAGAGCCAAAGCATGCAGAGTCGTA
ACATTCGCGAGTCCGAGTGCTCTAAAGGTTTGGGCATCGCGGGTAGGCAT
GGAGTTTAACGTGGCCTGTATTGGGGAAACGACAGCGACAGCAGCAAGGC
AGGCGGGCTGGAAGGAAGAGAGGATTTTTTATCCGAGGGAAGCACCAGGG
ATTGAGGGATGGGCAGCGGCGGTGGAAGAAGCTTTACAGGGATGAAGGGG
TTAGGGGTCAGGGTAGGGGTCGGGGAGGTTCATCACGTGCGGAGGAGTAC
AGGGGCAAATAATAAAG
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protein sequence of NO16G01000.1

>NO16G01000.1-protein ID=NO16G01000.1-protein|Name=NO16G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MGGLFCLALLLPAATDAFLLIPHLKQQHLQRPLAKTYQKHPRHLQSLLTY
LNTGSITLLSAATADVHQGTSSSSSSSSSSSSSSSSSSSNPTEDLVVLTR
EAGKNDKLRKLLEAREFNILELPCIAHCHAEGHAQLQQTLETQVFDYIVI
TSPEAAQVFLEVAQTCPTYKPTNLVPIGEATGVLLKKAGAGIKFTPSKAL
AKVLAVELPEMEEEKVGGKEGGMKSRRTARVLYPASKRAAHTLEDGLYAR
GVCEEGEREAQGEREGGSRLFEVTRLNTYDTVPAEWSEADESRAKACRVV
TFASPSALKVWASRVGMEFNVACIGETTATAARQAGWKEERIFYPREAPG
IEGWAAAVEEALQG*
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mRNA from alignment at chr16:320209..321555+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01000.1 ID=NO16G01000.1|Name=NO16G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at chr16:320209..321555+ (Nannochloropsis oceanica)
ATGGGCGGACTCTTTTGCCTGGCACTCCTCCTTCCTGCAGCAACAGATGC
TTTTCTCCTCATACCACACCTCAAGCAACAGCACCTGCAAAGGCCCCTTG
CCAAGACCTATCAGAAGCACCCAAGACACCTTCAGAGCTTGCTAACATAT
CTAAACACCGGATCAATCACTCTCTTATCCGCGGCCACGGCAGACGTGCA
CCAAGGGACTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCAACCCTACCGAGGACCTCGTGGTACTCACCCGC
GAAGCCGGCAAGAATGACAAGCTTCGCAAACTTTTGGAAGCACGAGAGTT
CAATATCTTAGAGCTTCCATGTATTGCGCACTGCCATGCAGAGGGCCATG
CCCAGCTGCAACAAACATTGGAGACGCAGGTGTTTGACTACATCGTCATC
ACGTCACCAGAGGTGAGAGTGATGGAGAGGGAGGCACAGCAGAAGGAATA
GTCCTTACTAGAAAGTAGCTGAAATAATGCCATTGCCACATGTGGAGTGG
CACGTCTCCTGGCAAAGACAAGAAGCTCACCGTCTCTCCACTCCATTTCT
CCACCCCTCCCCTCCTTGCCCCCCCCCTTCCCTCTCTCTCAGGCCGCACA
AGTCTTTCTAGAAGTTGCACAGACATGTCCCACCTACAAACCGACGAATC
TTGTTCCGATCGGCGAAGCGACAGGCGTGCTGTTGAAAAAAGCAGGAGCA
GGCATAAAATTCACGCCGTCAAAGGCCCTTGCGAAAGTGCTTGCTGTGGA
GCTACCAGAGATGGAGGAAGAGAAAGTGGGAGGGAAAGAGGGAGGCATGA
AGTCGAGAAGAACGGCAAGAGTACTTTATCCGGCGTCTAAACGAGCGGCG
CATACGTTGGAAGACGGATTGTATGCTAGGGGTGTGTGCGAGGAGGGGGA
AAGAGAGGCGCAGGGAGAGAGGGAGGGAGGAAGCAGGTTGTTTGAGGTGA
CCAGGCTTAATACATATGACACAGTTCCTGCAGAATGGAGTGAAGCCGAC
GAATCAAGAGCCAAAGCATGCAGAGTCGTAACATTCGCGAGTCCGAGTGC
TCTAAAGGTTTGGGCATCGCGGGTAGGCATGGAGTTTAACGTGGCCTGTA
TTGGGGAAACGACAGCGACAGCAGCAAGGCAGGCGGGCTGGAAGGAAGAG
AGGATTTTTTATCCGAGGGAAGCACCAGGGATTGAGGGATGGGCAGCGGC
GGTGGAAGAAGCTTTACAGGGATGAAGGGGTTAGGGGTCAGGGTAGGGGT
CGGGGAGGTTCATCACGTGCGGAGGAGTACAGGGGCAAATAATAAAG
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Coding sequence (CDS) from alignment at chr16:320209..321555+

>NO16G01000.1 ID=NO16G01000.1|Name=NO16G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr16:320209..321555+ (Nannochloropsis oceanica)
ATGGGCGGACTCTTTTGCCTGGCACTCCTCCTTCCTGCAGCAACAGATGC
TTTTCTCCTCATACCACACCTCAAGCAACAGCACCTGCAAAGGCCCCTTG
CCAAGACCTATCAGAAGCACCCAAGACACCTTCAGAGCTTGCTAACATAT
CTAAACACCGGATCAATCACTCTCTTATCCGCGGCCACGGCAGACGTGCA
CCAAGGGACTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCAACCCTACCGAGGACCTCGTGGTACTCACCCGC
GAAGCCGGCAAGAATGACAAGCTTCGCAAACTTTTGGAAGCACGAGAGTT
CAATATCTTAGAGCTTCCATGTATTGCGCACTGCCATGCAGAGGGCCATG
CCCAGCTGCAACAAACATTGGAGACGCAGGTGTTTGACTACATCGTCATC
ACGTCACCAGAGGCCGCACAAGTCTTTCTAGAAGTTGCACAGACATGTCC
CACCTACAAACCGACGAATCTTGTTCCGATCGGCGAAGCGACAGGCGTGC
TGTTGAAAAAAGCAGGAGCAGGCATAAAATTCACGCCGTCAAAGGCCCTT
GCGAAAGTGCTTGCTGTGGAGCTACCAGAGATGGAGGAAGAGAAAGTGGG
AGGGAAAGAGGGAGGCATGAAGTCGAGAAGAACGGCAAGAGTACTTTATC
CGGCGTCTAAACGAGCGGCGCATACGTTGGAAGACGGATTGTATGCTAGG
GGTGTGTGCGAGGAGGGGGAAAGAGAGGCGCAGGGAGAGAGGGAGGGAGG
AAGCAGGTTGTTTGAGGTGACCAGGCTTAATACATATGACACAGTTCCTG
CAGAATGGAGTGAAGCCGACGAATCAAGAGCCAAAGCATGCAGAGTCGTA
ACATTCGCGAGTCCGAGTGCTCTAAAGGTTTGGGCATCGCGGGTAGGCAT
GGAGTTTAACGTGGCCTGTATTGGGGAAACGACAGCGACAGCAGCAAGGC
AGGCGGGCTGGAAGGAAGAGAGGATTTTTTATCCGAGGGAAGCACCAGGG
ATTGAGGGATGGGCAGCGGCGGTGGAAGAAGCTTTACAGGGATGA
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Synonyms
Publications