|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr16 | genome | chr16:232483..235151 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G00670.1 vs.
Match: EWM24063.1 (Prolyl 4-hydroxylase, alpha subunit [Nannochloropsis gaditana]) HSP 1 Score: 663.3 bits (1710), Expect = 8.000e-187 Identity = 343/610 (56.23%), Postives = 435/610 (71.31%), Query Frame = 0
Query: 61 RRTSSSTPAQKPMKGRIPESHQLDEDDNGSLLSSLAATSSSSPLLAFLKSNPLIIVIAALAAGVYFGMKHQSQGVDLADSVSSFLHEGRSDSITARAPTLATPSLASSSQQEQHMAGTPMKARKKQRQSKQEGQECATTSRLALFLSRNVTVHICRNGQSIPMGTLYLTPSSTRCLDDLRNAVGDLLPACVPGACRLFDRYGYEIKALGALQDEQLLFAVLPKRHFMWPAFEVGHKVAVPGVTSSIPGQPITLETLSESPRVFLVENFLSPQDAEDLIENALGITAEGFALKRSTTGAEGSEVSSQRTSENAFDTTSPIAMKLKRRVFDLLGMRPYVETWADGLQVLRYNESKAYISHLDYLEVNDRSNHDFDSAREGGTNRFATVLLYLTDVEQGGETVFPHGYKLEGETLSKKEALAKAKALGLTAALQPGSWQEEMMGECINRLAVKPKKARAVLFYSQNEDGTVDKRSLHGACPVIKGVKWAANLWVWNGPRYGYSARQREKAVAAAEGEDWKGNGEGKGKGKYKGRDGRVEAEFSSSVGGVALFWEETRWGEMGPGLPAVKAITYQNHKWNVRREEGGEGGEVLVAWEIKTAEAVEGVVKFNYAG 671
+ +S S+P + KG IP+S E + + + A SS L S P +++ A +A G++HQSQG+DLAD++ + L + + P+L+ A + Q + ++++R SK+ + RLA LSRN+TV I NG+S P G+LYL P +T +++L++AVG ++ AC G CR+FDRYGYEIKALGAL DEQLLFAV P RHF+WPAFE+GH+VAVPGVTSS+PG PI LETLS+SPRVF++ENFLS +DA+++IE LGITA GFALKRSTTG +G+ VSSQRTSENAFDTTSP+AMKLKRRVFDLLGMRPYVETWADGLQVLRYN SKAYI H+DYLE + ++H+FDSA GGTNRFATVLLYLTDVE+GGETVFP G LE E + +E A+A+A G A L+PGSW+EEM CI+RLAVKP+K RAVLFYSQ+ DG D+RSLHGACPV+KGVKWAANLWVWNGPR+G+SA K +G+++A FSS+V GVAL+WE TRWG+MGPG +KA+TYQ HKWNVRR+EG E G VL +W I+ +A +G++K+ Y G
Sbjct: 8 KSSSMSSPRKTTNKGIIPDSGHSGEREENTRPTDNTAPSSFFKLWT---SAPFVVIFAIMAIAFALGLQHQSQGMDLADNIINLLQD--YSGAVSDVPSLSNWDAAQMPHKAQ-------RQKQRRRTSKEVNR------RLAPTLSRNMTVLIHDNGESTPAGSLYLEPKTTTSIEELKSAVGLVIDACHGGTCRVFDRYGYEIKALGALHDEQLLFAVPPSRHFVWPAFEIGHRVAVPGVTSSLPGHPIILETLSDSPRVFMLENFLSAEDADEVIETTLGITAAGFALKRSTTGTQGAVVSSQRTSENAFDTTSPVAMKLKRRVFDLLGMRPYVETWADGLQVLRYNASKAYIPHMDYLEFDSNADHNFDSASPGGTNRFATVLLYLTDVEEGGETVFPLGEPLEKEMRTTQEVQAEARARGRAADLKPGSWEEEMTETCISRLAVKPRKGRAVLFYSQHPDGRPDERSLHGACPVVKGVKWAANLWVWNGPRFGHSATSLAKEA-----------------------EGKIQAVFSSAVEGVALYWETTRWGKMGPGEAELKAMTYQGHKWNVRRDEGDEHGAVLASWTIEAEKAEDGIIKYRYEG 576
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G00670.1 ID=NO16G00670.1|Name=NO16G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp AAGCAAGCATGTACGGTCCATTTCTGCGGCATTGTGTAAACACCATCGCA GCAGGTCCCCATAGTCCTGTTGTGCAGCATGGTGGCCTCGTGCGGGACGT TGAGTCATCATCAAATTACGCGCTTGACCGGTCCGGCTGGCGCTCTGCCT TTCTTCCATGCCCCATCCCCAACAAACGGAACGCCCTACATCCCTCACAC TCACTCCTTTACTCAAAATTTCCAGTGCTTCTGCAAAGACGACGACGCTA TGGCCAGTCGACGCACTTCCTCCAGCACACCGGCGCAAAAGCCCATGAAA GGCAGGATCCCCGAGTCCCACCAGCTCGACGAGGATGACAATGGCTCTCT GCTTTCCTCCTTGGCCGCCACCTCGTCTTCTTCCCCCCTCCTGGCATTCT TGAAATCCAACCCCTTGATCATCGTGATAGCTGCATTAGCCGCCGGGGTA TATTTTGGCATGAAGCACCAGTCTCAAGGCGTGGACCTGGCCGACAGCGT CTCCTCTTTTCTCCACGAAGGACGCAGCGACAGCATCACCGCGCGTGCCC CCACCCTCGCGACTCCCTCTCTTGCTTCCTCCTCCCAGCAAGAGCAGCAC ATGGCAGGTACCCCTATGAAAGCCCGAAAGAAGCAGCGACAATCCAAGCA GGAGGGACAAGAATGTGCTACCACTTCCCGTCTCGCCCTTTTTCTCTCGC GAAACGTCACCGTCCACATCTGCCGCAACGGCCAAAGCATCCCCATGGGA ACCCTGTACCTTACTCCCAGCAGCACCCGTTGCCTCGACGACCTCCGAAA CGCGGTGGGTGATTTATTGCCTGCATGTGTTCCTGGGGCCTGCCGACTCT TTGATCGCTATGGGTATGAAATCAAGGCTCTAGGCGCCCTGCAAGATGAG CAGCTTCTCTTCGCCGTCCTCCCCAAGCGACACTTCATGTGGCCGGCCTT CGAGGTCGGGCACAAAGTTGCTGTGCCTGGAGTGACTTCCTCAATCCCGG GGCAGCCTATCACGCTGGAGACGCTATCGGAGTCTCCGCGTGTGTTCTTG GTCGAAAATTTCCTCTCTCCCCAAGACGCGGAGGACTTGATTGAGAATGC CCTAGGCATTACTGCCGAAGGCTTTGCTCTTAAGCGATCCACCACAGGCG CAGAGGGGTCTGAGGTATCTTCGCAACGAACGAGCGAGAATGCATTTGAT ACTACCTCGCCCATTGCGATGAAGCTAAAGAGAAGGGTGTTTGACCTTCT GGGGATGAGGCCCTACGTCGAGACCTGGGCGGATGGTCTTCAAGTGCTCC GCTACAATGAAAGCAAGGCTTACATCTCCCATTTAGACTATCTGGAGGTC AATGACCGGTCCAACCACGATTTTGACTCAGCAAGGGAGGGAGGGACCAA CCGCTTTGCAACCGTGCTGCTGTACCTCACGGATGTGGAACAGGGGGGCG AGACGGTGTTTCCCCACGGATACAAATTGGAGGGGGAAACCTTGTCAAAA AAGGAGGCATTGGCCAAGGCAAAAGCCCTCGGGTTGACCGCGGCCCTCCA ACCGGGTTCGTGGCAAGAGGAGATGATGGGCGAATGTATCAACAGGCTAG CGGTCAAACCCAAAAAGGCACGAGCTGTCTTGTTCTACTCTCAGAATGAG GACGGGACGGTGGACAAGAGAAGCCTGCATGGTGCGTGCCCGGTCATCAA GGGAGTGAAGTGGGCAGCAAACCTCTGGGTCTGGAACGGTCCGAGGTACG GATACAGTGCCAGGCAGAGAGAGAAGGCAGTGGCAGCGGCGGAAGGGGAG GACTGGAAGGGGAATGGGGAAGGGAAAGGGAAGGGGAAGTATAAGGGACG GGACGGGAGGGTGGAGGCAGAGTTTTCAAGTAGCGTTGGCGGAGTGGCTT TGTTCTGGGAGGAGACAAGGTGGGGAGAGATGGGACCAGGGCTACCGGCG GTAAAGGCCATAACGTATCAGAACCATAAGTGGAATGTGAGGAGGGAGGA AGGAGGGGAGGGAGGGGAGGTGTTGGTGGCTTGGGAGATTAAGACCGCGG AGGCGGTGGAGGGGGTGGTGAAATTTAATTATGCAGGGTGAAGGAGGGAA GGAGGGCTGGTAAGATGGAAAGTATATGTGTGTAACGATAAAGGGAAATA GGAATGCGACTCAATCACAAACCCAGAAGCATGACCGAGAGGACCGACGA AAAGAAGACGATGAGAGCAAGCAACAACAGTTAAACAAGCACTTTATTCA TTGAAGCGTATTACATGTATACAAGTATGCATGAAATAAATGTATGCATG TAATACATGAATGCATGAAGGTACCACCAACGTTGTCGTTTGGAATGCCA TCGAGCGCCTGTCTCGACACATCGAAATATGGAATTCCC back to topprotein sequence of NO16G00670.1 >NO16G00670.1-protein ID=NO16G00670.1-protein|Name=NO16G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=671bp MVASCGTLSHHQITRLTGPAGALPFFHAPSPTNGTPYIPHTHSFTQNFQC FCKDDDAMASRRTSSSTPAQKPMKGRIPESHQLDEDDNGSLLSSLAATSS SSPLLAFLKSNPLIIVIAALAAGVYFGMKHQSQGVDLADSVSSFLHEGRS DSITARAPTLATPSLASSSQQEQHMAGTPMKARKKQRQSKQEGQECATTS RLALFLSRNVTVHICRNGQSIPMGTLYLTPSSTRCLDDLRNAVGDLLPAC VPGACRLFDRYGYEIKALGALQDEQLLFAVLPKRHFMWPAFEVGHKVAVP GVTSSIPGQPITLETLSESPRVFLVENFLSPQDAEDLIENALGITAEGFA LKRSTTGAEGSEVSSQRTSENAFDTTSPIAMKLKRRVFDLLGMRPYVETW ADGLQVLRYNESKAYISHLDYLEVNDRSNHDFDSAREGGTNRFATVLLYL TDVEQGGETVFPHGYKLEGETLSKKEALAKAKALGLTAALQPGSWQEEMM GECINRLAVKPKKARAVLFYSQNEDGTVDKRSLHGACPVIKGVKWAANLW VWNGPRYGYSARQREKAVAAAEGEDWKGNGEGKGKGKYKGRDGRVEAEFS SSVGGVALFWEETRWGEMGPGLPAVKAITYQNHKWNVRREEGGEGGEVLV AWEIKTAEAVEGVVKFNYAG* back to topmRNA from alignment at chr16:232483..235151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G00670.1 ID=NO16G00670.1|Name=NO16G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2669bp|location=Sequence derived from alignment at chr16:232483..235151- (Nannochloropsis oceanica) AAGCAAGCATGTACGGTCCATTTCTGCGGCATTGTGTAAACACCATCGCA
GCAGGTCCCCATAGTCCTGTTGTGCAGCATGGTGGCCTCGTGCGGGACGT
TGAGTCATCATCAAATTACGCGCTTGACCGGTCCGGCTGGCGCTCTGCCT
TTCTTCCATGCCCCATCCCCAACAAACGGAACGCCCTACATCCCTCACAC
TCACTCCTTTACTCAAAATTTCCAGTGCTTCTGCAAAGACGACGACGCTA
TGGCCAGTCGACGCACTTCCTCCAGCACACCGGCGCAAAAGCCCATGAAA
GGCAGGATCCCCGAGTCCCACCAGCTCGACGAGGATGACAATGGCTCTCT
GCTTTCCTCCTTGGCCGCCACCTCGTCTTCTTCCCCCCTCCTGGCATTCT
TGAAATCCAACCCCTTGATCATCGTGATAGCTGCATTAGCCGCCGGGGTA
TATTTTGGCATGAAGCACCAGTCTCAAGGCGTGGACCTGGCCGACAGCGT
CTCCTCTTTTCTCCACGAAGGACGCAGCGACAGCATCACCGCGCGTGCCC
CCACCCTCGCGACTCCCTCTCTTGCTTCCTCCTCCCAGCAAGAGCAGCAC
ATGGCAGGTACCCCTATGAAAGCCCGAAAGAAGCAGCGACAATCCAAGCA
GGAGGGACAAGAATGTGCTACCACTTCCCGTCTCGCCCTTTTTCTCTCGC
GAAACGTCACCGTCCACATCTGCCGCAACGGCCAAAGCATCCCCATGGGA
ACCCTGTACCTTACTCCCAGCAGCACCCGTTGCCTCGACGACCTCCGAAA
CGCGGTGGGTGATTTATTGCCTGCATGTGTTCCTGGGGCCTGCCGACTCT
TTGATCGCTATGGGTATGAAATCAAGGCTCTAGGCGCCCTGCAAGATGAG
CAGCTTCTCTTCGCCGTCCTCCCCAAGCGACACTTCATGTGGCCGGCCTT
CGAGGTCGGGCACAAAGTTGCTGTGCCTGGAGTGACTTCCTCAATCCCGG
GGCAGCCTATCACGCTGGAGACGCTATCGGAGTCTCCGCGTGTGTTCTTG
GTCGAAAATTTCCTCTCTCCCCAAGACGCGGAGGACTTGATTGAGAATGC
CCTAGGTATTTTAGGTGGCAGTTTGGCATACATTTGCTGATAATTAAGGG
AAAGAGTGTGAGATAAAAGAGTCTTTGGCTTTCTTTTCCCTCTCCTTTGG
CCTGCATTAGATGCTTACCAACTCAGTCCCCTCCTTCCCTTCCTTCCCTT
CTTCCCTTATTTTTTCCAGGCATTACTGCCGAAGGCTTTGCTCTTAAGCG
ATCCACCACAGGCGCAGAGGGGTCTGAGGTATCTTCGCAACGAACGAGCG
AGAATGCATTTGATACTACCTCGCCCATTGCGATGAAGCTAAAGAGAAGG
GTGTTTGACCTTCTGGGGATGAGGTACGTATGTAAGCAGGGCGGGAGGGA
GGGAGGTGGGGACGAAAGGACAGAAAAGTAGAAGTAAGCCATCAACTCAC
GAATATCCTGTCCCCTCCCTCCCTCCCTCCCTCCCTTAGGCCCTACGTCG
AGACCTGGGCGGATGGTCTTCAAGTGCTCCGCTACAATGAAAGCAAGGCT
TACATCTCCCATTTAGACTATCTGGAGGTCAATGACCGGTCCAACCACGA
TTTTGACTCAGCAAGGGAGGGAGGGACCAACCGCTTTGCAACCGTGCTGC
TGTACCTCACGGATGTGGAACAGGGGGGCGAGACGGTGTTTCCCCACGGA
TACAAATTGGAGGGGGAAACCTTGTCAAAAAAGGAGGCATTGGCCAAGGC
AAAAGCCCTCGGGTTGACCGCGGCCCTCCAACCGGGTTCGTGGCAAGAGG
AGATGATGGGCGAATGTATCAACAGGCTAGCGGTCAAACCCAAAAAGGCA
CGAGCTGTCTTGTTCTACTCTCAGAATGAGGACGGGACGGTGGACAAGAG
AAGCCTGCATGGTGCGTGCCCGGTCATCAAGGGAGTGAAGTGGGCAGCAA
ACCTCTGGGTCTGGAACGGTCCGAGGTACGGATACAGTGCCAGGCAGAGA
GAGAAGGCAGTGGCAGCGGCGGAAGGGGAGGACTGGAAGGGGAATGGGGA
AGGGAAAGGGAAGGGGAAGTATAAGGGACGGGACGGGAGGGTGGAGGCAG
AGTTTTCAAGTAGCGTTGGCGGAGTGGCTTTGTTCTGGGAGGAGACAAGG
TGGGGAGAGATGGGACCAGGGCTACCGGCGGTAAAGGCCATAACGTATCA
GAACCATAAGTGGAATGTGAGGAGGGAGGAAGGAGGGGAGGGAGGGGAGG
TGTTGGTGGCTTGGGAGATTAAGACCGCGGAGGCGGTGGAGGGGGTGGTG
AAATTTAATTATGCAGGGTGAAGGAGGGAAGGAGGGCTGGTAAGATGGAA
AGTATATGTGTGTAACGATAAAGGGAAATAGGAATGCGACTCAATCACAA
ACCCAGAAGCATGACCGAGAGGACCGACGAAAAGAAGACGATGAGAGCAA
GCAACAACAGTTAAACAAGCACTTTATTCATTGAAGCGTATTACATGTAT
ACAAGTATGCATGAAATAAATGTATGCATGTAATACATGAATGCATGAAG
GTACCACCAACGTTGTCGTTTGGAATGCCATCGAGCGCCTGTCTCGACAC
ATCGAAATATGGAATTCCC back to topCoding sequence (CDS) from alignment at chr16:232483..235151- >NO16G00670.1 ID=NO16G00670.1|Name=NO16G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=2013bp|location=Sequence derived from alignment at chr16:232483..235151- (Nannochloropsis oceanica) ATGGTGGCCTCGTGCGGGACGTTGAGTCATCATCAAATTACGCGCTTGAC CGGTCCGGCTGGCGCTCTGCCTTTCTTCCATGCCCCATCCCCAACAAACG GAACGCCCTACATCCCTCACACTCACTCCTTTACTCAAAATTTCCAGTGC TTCTGCAAAGACGACGACGCTATGGCCAGTCGACGCACTTCCTCCAGCAC ACCGGCGCAAAAGCCCATGAAAGGCAGGATCCCCGAGTCCCACCAGCTCG ACGAGGATGACAATGGCTCTCTGCTTTCCTCCTTGGCCGCCACCTCGTCT TCTTCCCCCCTCCTGGCATTCTTGAAATCCAACCCCTTGATCATCGTGAT AGCTGCATTAGCCGCCGGGGTATATTTTGGCATGAAGCACCAGTCTCAAG GCGTGGACCTGGCCGACAGCGTCTCCTCTTTTCTCCACGAAGGACGCAGC GACAGCATCACCGCGCGTGCCCCCACCCTCGCGACTCCCTCTCTTGCTTC CTCCTCCCAGCAAGAGCAGCACATGGCAGGTACCCCTATGAAAGCCCGAA AGAAGCAGCGACAATCCAAGCAGGAGGGACAAGAATGTGCTACCACTTCC CGTCTCGCCCTTTTTCTCTCGCGAAACGTCACCGTCCACATCTGCCGCAA CGGCCAAAGCATCCCCATGGGAACCCTGTACCTTACTCCCAGCAGCACCC GTTGCCTCGACGACCTCCGAAACGCGGTGGGTGATTTATTGCCTGCATGT GTTCCTGGGGCCTGCCGACTCTTTGATCGCTATGGGTATGAAATCAAGGC TCTAGGCGCCCTGCAAGATGAGCAGCTTCTCTTCGCCGTCCTCCCCAAGC GACACTTCATGTGGCCGGCCTTCGAGGTCGGGCACAAAGTTGCTGTGCCT GGAGTGACTTCCTCAATCCCGGGGCAGCCTATCACGCTGGAGACGCTATC GGAGTCTCCGCGTGTGTTCTTGGTCGAAAATTTCCTCTCTCCCCAAGACG CGGAGGACTTGATTGAGAATGCCCTAGGCATTACTGCCGAAGGCTTTGCT CTTAAGCGATCCACCACAGGCGCAGAGGGGTCTGAGGTATCTTCGCAACG AACGAGCGAGAATGCATTTGATACTACCTCGCCCATTGCGATGAAGCTAA AGAGAAGGGTGTTTGACCTTCTGGGGATGAGGCCCTACGTCGAGACCTGG GCGGATGGTCTTCAAGTGCTCCGCTACAATGAAAGCAAGGCTTACATCTC CCATTTAGACTATCTGGAGGTCAATGACCGGTCCAACCACGATTTTGACT CAGCAAGGGAGGGAGGGACCAACCGCTTTGCAACCGTGCTGCTGTACCTC ACGGATGTGGAACAGGGGGGCGAGACGGTGTTTCCCCACGGATACAAATT GGAGGGGGAAACCTTGTCAAAAAAGGAGGCATTGGCCAAGGCAAAAGCCC TCGGGTTGACCGCGGCCCTCCAACCGGGTTCGTGGCAAGAGGAGATGATG GGCGAATGTATCAACAGGCTAGCGGTCAAACCCAAAAAGGCACGAGCTGT CTTGTTCTACTCTCAGAATGAGGACGGGACGGTGGACAAGAGAAGCCTGC ATGGTGCGTGCCCGGTCATCAAGGGAGTGAAGTGGGCAGCAAACCTCTGG GTCTGGAACGGTCCGAGGTACGGATACAGTGCCAGGCAGAGAGAGAAGGC AGTGGCAGCGGCGGAAGGGGAGGACTGGAAGGGGAATGGGGAAGGGAAAG GGAAGGGGAAGTATAAGGGACGGGACGGGAGGGTGGAGGCAGAGTTTTCA AGTAGCGTTGGCGGAGTGGCTTTGTTCTGGGAGGAGACAAGGTGGGGAGA GATGGGACCAGGGCTACCGGCGGTAAAGGCCATAACGTATCAGAACCATA AGTGGAATGTGAGGAGGGAGGAAGGAGGGGAGGGAGGGGAGGTGTTGGTG GCTTGGGAGATTAAGACCGCGGAGGCGGTGGAGGGGGTGGTGAAATTTAA TTATGCAGGGTGA back to top
|