NO16G00670.1, NO16G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00670.1
Unique NameNO16G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2389
Alignment locationchr16:232483..235151 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:232483..235151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO16G00670.1 vs.
Match: EWM24063.1 (Prolyl 4-hydroxylase, alpha subunit [Nannochloropsis gaditana])

HSP 1 Score: 663.3 bits (1710), Expect = 8.000e-187
Identity = 343/610 (56.23%), Postives = 435/610 (71.31%), Query Frame = 0
Query:   61 RRTSSSTPAQKPMKGRIPESHQLDEDDNGSLLSSLAATSSSSPLLAFLKSNPLIIVIAALAAGVYFGMKHQSQGVDLADSVSSFLHEGRSDSITARAPTLATPSLASSSQQEQHMAGTPMKARKKQRQSKQEGQECATTSRLALFLSRNVTVHICRNGQSIPMGTLYLTPSSTRCLDDLRNAVGDLLPACVPGACRLFDRYGYEIKALGALQDEQLLFAVLPKRHFMWPAFEVGHKVAVPGVTSSIPGQPITLETLSESPRVFLVENFLSPQDAEDLIENALGITAEGFALKRSTTGAEGSEVSSQRTSENAFDTTSPIAMKLKRRVFDLLGMRPYVETWADGLQVLRYNESKAYISHLDYLEVNDRSNHDFDSAREGGTNRFATVLLYLTDVEQGGETVFPHGYKLEGETLSKKEALAKAKALGLTAALQPGSWQEEMMGECINRLAVKPKKARAVLFYSQNEDGTVDKRSLHGACPVIKGVKWAANLWVWNGPRYGYSARQREKAVAAAEGEDWKGNGEGKGKGKYKGRDGRVEAEFSSSVGGVALFWEETRWGEMGPGLPAVKAITYQNHKWNVRREEGGEGGEVLVAWEIKTAEAVEGVVKFNYAG 671
            + +S S+P +   KG IP+S    E +  +  +   A SS   L     S P +++ A +A     G++HQSQG+DLAD++ + L +       +  P+L+    A    + Q       + ++++R SK+  +      RLA  LSRN+TV I  NG+S P G+LYL P +T  +++L++AVG ++ AC  G CR+FDRYGYEIKALGAL DEQLLFAV P RHF+WPAFE+GH+VAVPGVTSS+PG PI LETLS+SPRVF++ENFLS +DA+++IE  LGITA GFALKRSTTG +G+ VSSQRTSENAFDTTSP+AMKLKRRVFDLLGMRPYVETWADGLQVLRYN SKAYI H+DYLE +  ++H+FDSA  GGTNRFATVLLYLTDVE+GGETVFP G  LE E  + +E  A+A+A G  A L+PGSW+EEM   CI+RLAVKP+K RAVLFYSQ+ DG  D+RSLHGACPV+KGVKWAANLWVWNGPR+G+SA    K                         +G+++A FSS+V GVAL+WE TRWG+MGPG   +KA+TYQ HKWNVRR+EG E G VL +W I+  +A +G++K+ Y G
Sbjct:    8 KSSSMSSPRKTTNKGIIPDSGHSGEREENTRPTDNTAPSSFFKLWT---SAPFVVIFAIMAIAFALGLQHQSQGMDLADNIINLLQD--YSGAVSDVPSLSNWDAAQMPHKAQ-------RQKQRRRTSKEVNR------RLAPTLSRNMTVLIHDNGESTPAGSLYLEPKTTTSIEELKSAVGLVIDACHGGTCRVFDRYGYEIKALGALHDEQLLFAVPPSRHFVWPAFEIGHRVAVPGVTSSLPGHPIILETLSDSPRVFMLENFLSAEDADEVIETTLGITAAGFALKRSTTGTQGAVVSSQRTSENAFDTTSPVAMKLKRRVFDLLGMRPYVETWADGLQVLRYNASKAYIPHMDYLEFDSNADHNFDSASPGGTNRFATVLLYLTDVEEGGETVFPLGEPLEKEMRTTQEVQAEARARGRAADLKPGSWEEEMTETCISRLAVKPRKGRAVLFYSQHPDGRPDERSLHGACPVVKGVKWAANLWVWNGPRFGHSATSLAKEA-----------------------EGKIQAVFSSAVEGVALYWETTRWGKMGPGEAELKAMTYQGHKWNVRRDEGDEHGAVLASWTIEAEKAEDGIIKYRYEG 576          
The following BLAST results are available for this feature:
BLAST of NO16G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24063.18.000e-18756.23Prolyl 4-hydroxylase, alpha subunit [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00670NO16G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00670.1NO16G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00670.1.cds1NO16G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00670.1.cds2NO16G00670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00670.1.cds3NO16G00670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00670.1 ID=NO16G00670.1|Name=NO16G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp
AAGCAAGCATGTACGGTCCATTTCTGCGGCATTGTGTAAACACCATCGCA
GCAGGTCCCCATAGTCCTGTTGTGCAGCATGGTGGCCTCGTGCGGGACGT
TGAGTCATCATCAAATTACGCGCTTGACCGGTCCGGCTGGCGCTCTGCCT
TTCTTCCATGCCCCATCCCCAACAAACGGAACGCCCTACATCCCTCACAC
TCACTCCTTTACTCAAAATTTCCAGTGCTTCTGCAAAGACGACGACGCTA
TGGCCAGTCGACGCACTTCCTCCAGCACACCGGCGCAAAAGCCCATGAAA
GGCAGGATCCCCGAGTCCCACCAGCTCGACGAGGATGACAATGGCTCTCT
GCTTTCCTCCTTGGCCGCCACCTCGTCTTCTTCCCCCCTCCTGGCATTCT
TGAAATCCAACCCCTTGATCATCGTGATAGCTGCATTAGCCGCCGGGGTA
TATTTTGGCATGAAGCACCAGTCTCAAGGCGTGGACCTGGCCGACAGCGT
CTCCTCTTTTCTCCACGAAGGACGCAGCGACAGCATCACCGCGCGTGCCC
CCACCCTCGCGACTCCCTCTCTTGCTTCCTCCTCCCAGCAAGAGCAGCAC
ATGGCAGGTACCCCTATGAAAGCCCGAAAGAAGCAGCGACAATCCAAGCA
GGAGGGACAAGAATGTGCTACCACTTCCCGTCTCGCCCTTTTTCTCTCGC
GAAACGTCACCGTCCACATCTGCCGCAACGGCCAAAGCATCCCCATGGGA
ACCCTGTACCTTACTCCCAGCAGCACCCGTTGCCTCGACGACCTCCGAAA
CGCGGTGGGTGATTTATTGCCTGCATGTGTTCCTGGGGCCTGCCGACTCT
TTGATCGCTATGGGTATGAAATCAAGGCTCTAGGCGCCCTGCAAGATGAG
CAGCTTCTCTTCGCCGTCCTCCCCAAGCGACACTTCATGTGGCCGGCCTT
CGAGGTCGGGCACAAAGTTGCTGTGCCTGGAGTGACTTCCTCAATCCCGG
GGCAGCCTATCACGCTGGAGACGCTATCGGAGTCTCCGCGTGTGTTCTTG
GTCGAAAATTTCCTCTCTCCCCAAGACGCGGAGGACTTGATTGAGAATGC
CCTAGGCATTACTGCCGAAGGCTTTGCTCTTAAGCGATCCACCACAGGCG
CAGAGGGGTCTGAGGTATCTTCGCAACGAACGAGCGAGAATGCATTTGAT
ACTACCTCGCCCATTGCGATGAAGCTAAAGAGAAGGGTGTTTGACCTTCT
GGGGATGAGGCCCTACGTCGAGACCTGGGCGGATGGTCTTCAAGTGCTCC
GCTACAATGAAAGCAAGGCTTACATCTCCCATTTAGACTATCTGGAGGTC
AATGACCGGTCCAACCACGATTTTGACTCAGCAAGGGAGGGAGGGACCAA
CCGCTTTGCAACCGTGCTGCTGTACCTCACGGATGTGGAACAGGGGGGCG
AGACGGTGTTTCCCCACGGATACAAATTGGAGGGGGAAACCTTGTCAAAA
AAGGAGGCATTGGCCAAGGCAAAAGCCCTCGGGTTGACCGCGGCCCTCCA
ACCGGGTTCGTGGCAAGAGGAGATGATGGGCGAATGTATCAACAGGCTAG
CGGTCAAACCCAAAAAGGCACGAGCTGTCTTGTTCTACTCTCAGAATGAG
GACGGGACGGTGGACAAGAGAAGCCTGCATGGTGCGTGCCCGGTCATCAA
GGGAGTGAAGTGGGCAGCAAACCTCTGGGTCTGGAACGGTCCGAGGTACG
GATACAGTGCCAGGCAGAGAGAGAAGGCAGTGGCAGCGGCGGAAGGGGAG
GACTGGAAGGGGAATGGGGAAGGGAAAGGGAAGGGGAAGTATAAGGGACG
GGACGGGAGGGTGGAGGCAGAGTTTTCAAGTAGCGTTGGCGGAGTGGCTT
TGTTCTGGGAGGAGACAAGGTGGGGAGAGATGGGACCAGGGCTACCGGCG
GTAAAGGCCATAACGTATCAGAACCATAAGTGGAATGTGAGGAGGGAGGA
AGGAGGGGAGGGAGGGGAGGTGTTGGTGGCTTGGGAGATTAAGACCGCGG
AGGCGGTGGAGGGGGTGGTGAAATTTAATTATGCAGGGTGAAGGAGGGAA
GGAGGGCTGGTAAGATGGAAAGTATATGTGTGTAACGATAAAGGGAAATA
GGAATGCGACTCAATCACAAACCCAGAAGCATGACCGAGAGGACCGACGA
AAAGAAGACGATGAGAGCAAGCAACAACAGTTAAACAAGCACTTTATTCA
TTGAAGCGTATTACATGTATACAAGTATGCATGAAATAAATGTATGCATG
TAATACATGAATGCATGAAGGTACCACCAACGTTGTCGTTTGGAATGCCA
TCGAGCGCCTGTCTCGACACATCGAAATATGGAATTCCC
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protein sequence of NO16G00670.1

>NO16G00670.1-protein ID=NO16G00670.1-protein|Name=NO16G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=671bp
MVASCGTLSHHQITRLTGPAGALPFFHAPSPTNGTPYIPHTHSFTQNFQC
FCKDDDAMASRRTSSSTPAQKPMKGRIPESHQLDEDDNGSLLSSLAATSS
SSPLLAFLKSNPLIIVIAALAAGVYFGMKHQSQGVDLADSVSSFLHEGRS
DSITARAPTLATPSLASSSQQEQHMAGTPMKARKKQRQSKQEGQECATTS
RLALFLSRNVTVHICRNGQSIPMGTLYLTPSSTRCLDDLRNAVGDLLPAC
VPGACRLFDRYGYEIKALGALQDEQLLFAVLPKRHFMWPAFEVGHKVAVP
GVTSSIPGQPITLETLSESPRVFLVENFLSPQDAEDLIENALGITAEGFA
LKRSTTGAEGSEVSSQRTSENAFDTTSPIAMKLKRRVFDLLGMRPYVETW
ADGLQVLRYNESKAYISHLDYLEVNDRSNHDFDSAREGGTNRFATVLLYL
TDVEQGGETVFPHGYKLEGETLSKKEALAKAKALGLTAALQPGSWQEEMM
GECINRLAVKPKKARAVLFYSQNEDGTVDKRSLHGACPVIKGVKWAANLW
VWNGPRYGYSARQREKAVAAAEGEDWKGNGEGKGKGKYKGRDGRVEAEFS
SSVGGVALFWEETRWGEMGPGLPAVKAITYQNHKWNVRREEGGEGGEVLV
AWEIKTAEAVEGVVKFNYAG*
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mRNA from alignment at chr16:232483..235151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00670.1 ID=NO16G00670.1|Name=NO16G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2669bp|location=Sequence derived from alignment at chr16:232483..235151- (Nannochloropsis oceanica)
AAGCAAGCATGTACGGTCCATTTCTGCGGCATTGTGTAAACACCATCGCA GCAGGTCCCCATAGTCCTGTTGTGCAGCATGGTGGCCTCGTGCGGGACGT TGAGTCATCATCAAATTACGCGCTTGACCGGTCCGGCTGGCGCTCTGCCT TTCTTCCATGCCCCATCCCCAACAAACGGAACGCCCTACATCCCTCACAC TCACTCCTTTACTCAAAATTTCCAGTGCTTCTGCAAAGACGACGACGCTA TGGCCAGTCGACGCACTTCCTCCAGCACACCGGCGCAAAAGCCCATGAAA GGCAGGATCCCCGAGTCCCACCAGCTCGACGAGGATGACAATGGCTCTCT GCTTTCCTCCTTGGCCGCCACCTCGTCTTCTTCCCCCCTCCTGGCATTCT TGAAATCCAACCCCTTGATCATCGTGATAGCTGCATTAGCCGCCGGGGTA TATTTTGGCATGAAGCACCAGTCTCAAGGCGTGGACCTGGCCGACAGCGT CTCCTCTTTTCTCCACGAAGGACGCAGCGACAGCATCACCGCGCGTGCCC CCACCCTCGCGACTCCCTCTCTTGCTTCCTCCTCCCAGCAAGAGCAGCAC ATGGCAGGTACCCCTATGAAAGCCCGAAAGAAGCAGCGACAATCCAAGCA GGAGGGACAAGAATGTGCTACCACTTCCCGTCTCGCCCTTTTTCTCTCGC GAAACGTCACCGTCCACATCTGCCGCAACGGCCAAAGCATCCCCATGGGA ACCCTGTACCTTACTCCCAGCAGCACCCGTTGCCTCGACGACCTCCGAAA CGCGGTGGGTGATTTATTGCCTGCATGTGTTCCTGGGGCCTGCCGACTCT TTGATCGCTATGGGTATGAAATCAAGGCTCTAGGCGCCCTGCAAGATGAG CAGCTTCTCTTCGCCGTCCTCCCCAAGCGACACTTCATGTGGCCGGCCTT CGAGGTCGGGCACAAAGTTGCTGTGCCTGGAGTGACTTCCTCAATCCCGG GGCAGCCTATCACGCTGGAGACGCTATCGGAGTCTCCGCGTGTGTTCTTG GTCGAAAATTTCCTCTCTCCCCAAGACGCGGAGGACTTGATTGAGAATGC CCTAGGTATTTTAGGTGGCAGTTTGGCATACATTTGCTGATAATTAAGGG AAAGAGTGTGAGATAAAAGAGTCTTTGGCTTTCTTTTCCCTCTCCTTTGG CCTGCATTAGATGCTTACCAACTCAGTCCCCTCCTTCCCTTCCTTCCCTT CTTCCCTTATTTTTTCCAGGCATTACTGCCGAAGGCTTTGCTCTTAAGCG ATCCACCACAGGCGCAGAGGGGTCTGAGGTATCTTCGCAACGAACGAGCG AGAATGCATTTGATACTACCTCGCCCATTGCGATGAAGCTAAAGAGAAGG GTGTTTGACCTTCTGGGGATGAGGTACGTATGTAAGCAGGGCGGGAGGGA GGGAGGTGGGGACGAAAGGACAGAAAAGTAGAAGTAAGCCATCAACTCAC GAATATCCTGTCCCCTCCCTCCCTCCCTCCCTCCCTTAGGCCCTACGTCG AGACCTGGGCGGATGGTCTTCAAGTGCTCCGCTACAATGAAAGCAAGGCT TACATCTCCCATTTAGACTATCTGGAGGTCAATGACCGGTCCAACCACGA TTTTGACTCAGCAAGGGAGGGAGGGACCAACCGCTTTGCAACCGTGCTGC TGTACCTCACGGATGTGGAACAGGGGGGCGAGACGGTGTTTCCCCACGGA TACAAATTGGAGGGGGAAACCTTGTCAAAAAAGGAGGCATTGGCCAAGGC AAAAGCCCTCGGGTTGACCGCGGCCCTCCAACCGGGTTCGTGGCAAGAGG AGATGATGGGCGAATGTATCAACAGGCTAGCGGTCAAACCCAAAAAGGCA CGAGCTGTCTTGTTCTACTCTCAGAATGAGGACGGGACGGTGGACAAGAG AAGCCTGCATGGTGCGTGCCCGGTCATCAAGGGAGTGAAGTGGGCAGCAA ACCTCTGGGTCTGGAACGGTCCGAGGTACGGATACAGTGCCAGGCAGAGA GAGAAGGCAGTGGCAGCGGCGGAAGGGGAGGACTGGAAGGGGAATGGGGA AGGGAAAGGGAAGGGGAAGTATAAGGGACGGGACGGGAGGGTGGAGGCAG AGTTTTCAAGTAGCGTTGGCGGAGTGGCTTTGTTCTGGGAGGAGACAAGG TGGGGAGAGATGGGACCAGGGCTACCGGCGGTAAAGGCCATAACGTATCA GAACCATAAGTGGAATGTGAGGAGGGAGGAAGGAGGGGAGGGAGGGGAGG TGTTGGTGGCTTGGGAGATTAAGACCGCGGAGGCGGTGGAGGGGGTGGTG AAATTTAATTATGCAGGGTGAAGGAGGGAAGGAGGGCTGGTAAGATGGAA AGTATATGTGTGTAACGATAAAGGGAAATAGGAATGCGACTCAATCACAA ACCCAGAAGCATGACCGAGAGGACCGACGAAAAGAAGACGATGAGAGCAA GCAACAACAGTTAAACAAGCACTTTATTCATTGAAGCGTATTACATGTAT ACAAGTATGCATGAAATAAATGTATGCATGTAATACATGAATGCATGAAG GTACCACCAACGTTGTCGTTTGGAATGCCATCGAGCGCCTGTCTCGACAC ATCGAAATATGGAATTCCC
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Coding sequence (CDS) from alignment at chr16:232483..235151-

>NO16G00670.1 ID=NO16G00670.1|Name=NO16G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=2013bp|location=Sequence derived from alignment at chr16:232483..235151- (Nannochloropsis oceanica)
ATGGTGGCCTCGTGCGGGACGTTGAGTCATCATCAAATTACGCGCTTGAC
CGGTCCGGCTGGCGCTCTGCCTTTCTTCCATGCCCCATCCCCAACAAACG
GAACGCCCTACATCCCTCACACTCACTCCTTTACTCAAAATTTCCAGTGC
TTCTGCAAAGACGACGACGCTATGGCCAGTCGACGCACTTCCTCCAGCAC
ACCGGCGCAAAAGCCCATGAAAGGCAGGATCCCCGAGTCCCACCAGCTCG
ACGAGGATGACAATGGCTCTCTGCTTTCCTCCTTGGCCGCCACCTCGTCT
TCTTCCCCCCTCCTGGCATTCTTGAAATCCAACCCCTTGATCATCGTGAT
AGCTGCATTAGCCGCCGGGGTATATTTTGGCATGAAGCACCAGTCTCAAG
GCGTGGACCTGGCCGACAGCGTCTCCTCTTTTCTCCACGAAGGACGCAGC
GACAGCATCACCGCGCGTGCCCCCACCCTCGCGACTCCCTCTCTTGCTTC
CTCCTCCCAGCAAGAGCAGCACATGGCAGGTACCCCTATGAAAGCCCGAA
AGAAGCAGCGACAATCCAAGCAGGAGGGACAAGAATGTGCTACCACTTCC
CGTCTCGCCCTTTTTCTCTCGCGAAACGTCACCGTCCACATCTGCCGCAA
CGGCCAAAGCATCCCCATGGGAACCCTGTACCTTACTCCCAGCAGCACCC
GTTGCCTCGACGACCTCCGAAACGCGGTGGGTGATTTATTGCCTGCATGT
GTTCCTGGGGCCTGCCGACTCTTTGATCGCTATGGGTATGAAATCAAGGC
TCTAGGCGCCCTGCAAGATGAGCAGCTTCTCTTCGCCGTCCTCCCCAAGC
GACACTTCATGTGGCCGGCCTTCGAGGTCGGGCACAAAGTTGCTGTGCCT
GGAGTGACTTCCTCAATCCCGGGGCAGCCTATCACGCTGGAGACGCTATC
GGAGTCTCCGCGTGTGTTCTTGGTCGAAAATTTCCTCTCTCCCCAAGACG
CGGAGGACTTGATTGAGAATGCCCTAGGCATTACTGCCGAAGGCTTTGCT
CTTAAGCGATCCACCACAGGCGCAGAGGGGTCTGAGGTATCTTCGCAACG
AACGAGCGAGAATGCATTTGATACTACCTCGCCCATTGCGATGAAGCTAA
AGAGAAGGGTGTTTGACCTTCTGGGGATGAGGCCCTACGTCGAGACCTGG
GCGGATGGTCTTCAAGTGCTCCGCTACAATGAAAGCAAGGCTTACATCTC
CCATTTAGACTATCTGGAGGTCAATGACCGGTCCAACCACGATTTTGACT
CAGCAAGGGAGGGAGGGACCAACCGCTTTGCAACCGTGCTGCTGTACCTC
ACGGATGTGGAACAGGGGGGCGAGACGGTGTTTCCCCACGGATACAAATT
GGAGGGGGAAACCTTGTCAAAAAAGGAGGCATTGGCCAAGGCAAAAGCCC
TCGGGTTGACCGCGGCCCTCCAACCGGGTTCGTGGCAAGAGGAGATGATG
GGCGAATGTATCAACAGGCTAGCGGTCAAACCCAAAAAGGCACGAGCTGT
CTTGTTCTACTCTCAGAATGAGGACGGGACGGTGGACAAGAGAAGCCTGC
ATGGTGCGTGCCCGGTCATCAAGGGAGTGAAGTGGGCAGCAAACCTCTGG
GTCTGGAACGGTCCGAGGTACGGATACAGTGCCAGGCAGAGAGAGAAGGC
AGTGGCAGCGGCGGAAGGGGAGGACTGGAAGGGGAATGGGGAAGGGAAAG
GGAAGGGGAAGTATAAGGGACGGGACGGGAGGGTGGAGGCAGAGTTTTCA
AGTAGCGTTGGCGGAGTGGCTTTGTTCTGGGAGGAGACAAGGTGGGGAGA
GATGGGACCAGGGCTACCGGCGGTAAAGGCCATAACGTATCAGAACCATA
AGTGGAATGTGAGGAGGGAGGAAGGAGGGGAGGGAGGGGAGGTGTTGGTG
GCTTGGGAGATTAAGACCGCGGAGGCGGTGGAGGGGGTGGTGAAATTTAA
TTATGCAGGGTGA
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Synonyms
Publications