NO16G00580.1, NO16G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00580.1
Unique NameNO16G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1745
Alignment locationchr16:202849..205175 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:202849..205175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00580.1 vs.
Match: EWM24073.1 (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]; EWM24074.1 Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana])

HSP 1 Score: 483.4 bits (1243), Expect = 5.500e-133
Identity = 235/330 (71.21%), Postives = 268/330 (81.21%), Query Frame = 0 
Query:    1 MCVG------PTLTQSNTPAIPLEPSTLPPLVATSGLDAQDGGPEIDIVDRLNAQTKRLAAKSKSEPGDEDYACLQLVKGGATVFKHRFWPLLYLYWAYTAYGIVTAPSLAFAIGAFILTYIYIDLYGAVLHIVLDNPNFLKLPLLGEACLEFQFHHIIPHEITVRSYIHIAADLNGIIGLQYGWHLFLFKGLGDPAFRCLACCAVLNAYLGQLAHRQAHMLPEKRDPVVDVLQRLGLMVAPDTHRRHHKTYDQGFPILSGWCDAPITFLFQHIVSSQWIWLSAFLLLTFGGIAGVARLYLPVFAWAMEGKGWEGAWEGAAESWSRSSML 325
            MC+G      P +T ++  A+    S   P       DAQDG   +DIVDRLN Q K LAAK+   PGDE YACLQ+VK GATVFKHR WPL+Y+YWAYT YGI+T PSLAFA+GAF+LTY+YIDLYGAVLHIVLDNPNFLKLPL+GEACLEFQFHHIIPHEITVR + HIAADLNGIIGL+YG +L LF GL DPA+RC+ACCAVLNAYLGQLAHRQAHM PEKRDPVV VLQ LGLMV PDTHRRHHKTYDQGFPILSGW DAP+TFL++++V SQW+WL+ F+LLTFGGIAG+ RLYLP+ AWA+E    EG  EGA   W++SSML
Sbjct:    1 MCIGSVSAAIPPVTAASAEAVAQHSSMPVP-----ESDAQDGDASMDIVDRLNVQAKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAAWALE----EGGCEGAIRGWAKSSML 321
The following BLAST results are available for this feature:
BLAST of NO16G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24073.15.500e-13371.21Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00580NO16G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00580.1NO16G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00580.1.cds1NO16G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00580.1.cds2NO16G00580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00580.1.cds3NO16G00580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00580.1.cds4NO16G00580.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00580.1 ID=NO16G00580.1|Name=NO16G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1745bp
AGGTACACCCAGCCTGCAACACCAGCACAACCGCCACCATCGACAGCCAT
GTGCGTGGGACCGACATTGACTCAGAGCAATACCCCTGCCATCCCTTTGG
AACCGTCGACGCTTCCTCCTTTGGTTGCTACCTCAGGGCTTGATGCCCAG
GACGGCGGCCCGGAGATAGACATTGTTGATCGATTGAACGCACAAACCAA
ACGGTTGGCAGCCAAGAGCAAGAGCGAGCCGGGCGATGAAGACTATGCTT
GCTTGCAGCTTGTTAAGGGCGGGGCGACGGTATTCAAGCACCGCTTCTGG
CCCCTTCTGTACCTGTACTGGGCCTACACCGCGTATGGCATCGTCACGGC
TCCCTCCCTCGCCTTCGCCATCGGGGCCTTCATCCTAACGTACATCTACA
TCGATTTGTACGGCGCAGTTCTCCATATCGTGCTGGACAACCCGAATTTC
TTGAAGCTACCCTTGTTGGGCGAGGCCTGCTTGGAGTTTCAGTTCCACCA
CATCATTCCCCACGAAATCACCGTTCGATCCTACATCCATATTGCCGCCG
ACCTCAACGGCATCATTGGATTGCAGTACGGCTGGCACCTGTTTTTGTTC
AAAGGTCTGGGGGACCCGGCGTTTCGCTGTCTGGCGTGCTGTGCAGTGCT
CAACGCCTACCTTGGCCAACTTGCGCACAGGCAGGCCCACATGCTGCCCG
AAAAGAGGGATCCTGTGGTTGATGTTCTCCAGCGCTTGGGCCTTATGGTG
GCGCCGGACACGCACCGCCGCCACCACAAGACGTACGATCAGGGCTTCCC
TATCTTGAGTGGCTGGTGCGATGCGCCCATCACCTTCCTCTTCCAGCACA
TCGTCTCCTCTCAGTGGATCTGGCTTTCGGCCTTCCTCCTTCTTACCTTT
GGGGGTATTGCGGGTGTGGCGAGGTTGTATCTGCCTGTCTTTGCCTGGGC
GATGGAGGGGAAGGGATGGGAAGGAGCGTGGGAGGGAGCGGCCGAATCCT
GGTCGAGGTCGTCGATGCTCTAAGGAGGGCGAGAGGGAGATCGGGAGGGG
GGGCGGGATAATGATTCTGAAGACCTAAAGTAAAATGCGATAGACAACTA
GCAAATAGGAAGACCTTACATTTGATCATACCAACCTTCTTCACTCCTTC
CTTCCCTCCTGCCTCCCTGGGCTGAAGCGATCGTTCGCAAAAAGTATGTA
TTCTGCGGGGCGTGGTCCAGGAGAGAGAGGGAGGAGTAGGGAGGGAAGGC
GGGAAGGCGACGACGGTTGCCTTTTTGACATAATGGTGCATGCGTATACG
TGCTAGCATGAAATCCAGGCAGCCGTGAGGAGCACCGACAGCTGTAGCAA
CTGAACCAGCAGGAAAAGAAAGAGGTGCATGAATAGTTCAGGGTGGGGGC
TCCGCAATATTCTCCTTTCTCTTGACGGTCCGCACCTAGATAGGGAACAA
GGGAATGAGGGAGGGCGGGCTTGAAGCCCTACTAAGGTGTAACACGACGA
AAGATCTTTGTGTGCACATGTGACCAGCTAGCCAATGAGAAAGCAGAACA
ACAGCAGCGACAGCAATAACACAGACGCAATGACAGCGGCGACCCCGGTA
GGAGGAGAAAGAAGATGAGGGTACTTTTTAAGGTGCGAAGGGCGTGAGAG
AGAAAGAGGAATAAGGAAACACATTGTCATCAGAAGAAGACCACGTAAGG
ATATACGCGTGGTGTACTGTGTGCGCTTGTGTAAGTGTGCGTTTG
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protein sequence of NO16G00580.1

>NO16G00580.1-protein ID=NO16G00580.1-protein|Name=NO16G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MCVGPTLTQSNTPAIPLEPSTLPPLVATSGLDAQDGGPEIDIVDRLNAQT
KRLAAKSKSEPGDEDYACLQLVKGGATVFKHRFWPLLYLYWAYTAYGIVT
APSLAFAIGAFILTYIYIDLYGAVLHIVLDNPNFLKLPLLGEACLEFQFH
HIIPHEITVRSYIHIAADLNGIIGLQYGWHLFLFKGLGDPAFRCLACCAV
LNAYLGQLAHRQAHMLPEKRDPVVDVLQRLGLMVAPDTHRRHHKTYDQGF
PILSGWCDAPITFLFQHIVSSQWIWLSAFLLLTFGGIAGVARLYLPVFAW
AMEGKGWEGAWEGAAESWSRSSML*
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mRNA from alignment at chr16:202849..205175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00580.1 ID=NO16G00580.1|Name=NO16G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2327bp|location=Sequence derived from alignment at chr16:202849..205175+ (Nannochloropsis oceanica)
AGGTACACCCAGCCTGCAACACCAGCACAACCGCCACCATCGACAGCCAT
GTGCGTGGGACCGACATTGACTCAGAGCAATACCCCTGCCATCCCTTTGG
AACCGTCGACGCTTCCTCCTTTGGTTGCTACCTCAGGGCTTGATGCCCAG
GACGGCGGCCCGGAGATAGACATTGTTGATCGATTGAACGCACAAACCAA
ACGGTTGGCAGCCAAGAGCAAGAGCGAGCCGGGCGATGAAGACTATGCTT
GCTTGCAGCTTGTTAAGGGCGGGGCGACGGTGCGTTTATCGGAGGGAAGG
AGGGCTGGAAGGGAAGGAGGGAGGGCAGTCGATGATAGGTTGCACGTCGG
CGGGGGCGGACTCGTCAGGATTGAGGTCTTGAGCATATATAACCAGAAGA
ATGAAGAATAATTATTTCCGTTAAACTCATATTTTCTTTTCACCTCTAAT
TCAGGTATTCAAGCACCGCTTCTGGCCCCTTCTGTACCTGTACTGGGCCT
ACACCGCGTATGGCATCGTCACGGCTCCCTCCCTCGCCTTCGCCATCGGG
GCCTTCATCCTAACGTACATCTACATCGATTTGTACGGCGCAGTTCTCCA
TATCGTGCTGGACAACCCGAATTTCTTGAAGCTACCCTTGTTGGGCGAGG
CCTGCTTGGAGTTTCAGGTGAGAAACATTCTGCATTTCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCGCCTCTCCATATTTTTTCGCCTTCAA
TCTGTATCACGCGGCCTATCTTGTGTAGAAACCCTCTGTGGCTTCACAAA
CTGACCTCAAACCCTCCCTCCCCAGTTCCACCACATCATTCCCCACGAAA
TCACCGTTCGATCCTACATCCATATTGCCGCCGACCTCAACGGCATCATT
GGATTGCAGTACGGCTGGCACCTGTTTTTGTTCAAAGGTCTGGGGGACCC
GGCGTTTCGCTGTCTGGCGTGCTGTGCAGTGCTCAACGCCTACCTTGGCC
AACTTGCGCACAGGCAGGCCCACATGCTGCCCGAAAAGAGGGATCCTGTG
GTTGATGTTCTCCAGCGCTTGGGCCTTATGGTGGCGCCGGACACGCACCG
CCGCCACCACAAGACGTACGATCAGGGCTTCCCTATCTTGAGTGGTACGT
GCTTGCTTCTTCACTTACCCACTTGTCTGCTTGCCTGCTTGCCTACTTGC
CTACTTGCCTACATGCTTTTCCTCCTTCCCTCTTTTCCCTCTTTCCCTCG
TCCAGGCTGATGCAATGCCCCCATAACCTTCCTCTTCCAACATGCCGTGT
CCTTCCAGTGGGTCTGGCTAAGCCATCATCTTACATTCATCCCTCCTTTC
CTTCTCTGTCTTCTTCCCTCTTTCCCCCACCCATTCCATGCAGGCTGGTG
CGATGCGCCCATCACCTTCCTCTTCCAGCACATCGTCTCCTCTCAGTGGA
TCTGGCTTTCGGCCTTCCTCCTTCTTACCTTTGGGGGTATTGCGGGTGTG
GCGAGGTTGTATCTGCCTGTCTTTGCCTGGGCGATGGAGGGGAAGGGATG
GGAAGGAGCGTGGGAGGGAGCGGCCGAATCCTGGTCGAGGTCGTCGATGC
TCTAAGGAGGGCGAGAGGGAGATCGGGAGGGGGGGCGGGATAATGATTCT
GAAGACCTAAAGTAAAATGCGATAGACAACTAGCAAATAGGAAGACCTTA
CATTTGATCATACCAACCTTCTTCACTCCTTCCTTCCCTCCTGCCTCCCT
GGGCTGAAGCGATCGTTCGCAAAAAGTATGTATTCTGCGGGGCGTGGTCC
AGGAGAGAGAGGGAGGAGTAGGGAGGGAAGGCGGGAAGGCGACGACGGTT
GCCTTTTTGACATAATGGTGCATGCGTATACGTGCTAGCATGAAATCCAG
GCAGCCGTGAGGAGCACCGACAGCTGTAGCAACTGAACCAGCAGGAAAAG
AAAGAGGTGCATGAATAGTTCAGGGTGGGGGCTCCGCAATATTCTCCTTT
CTCTTGACGGTCCGCACCTAGATAGGGAACAAGGGAATGAGGGAGGGCGG
GCTTGAAGCCCTACTAAGGTGTAACACGACGAAAGATCTTTGTGTGCACA
TGTGACCAGCTAGCCAATGAGAAAGCAGAACAACAGCAGCGACAGCAATA
ACACAGACGCAATGACAGCGGCGACCCCGGTAGGAGGAGAAAGAAGATGA
GGGTACTTTTTAAGGTGCGAAGGGCGTGAGAGAGAAAGAGGAATAAGGAA
ACACATTGTCATCAGAAGAAGACCACGTAAGGATATACGCGTGGTGTACT
GTGTGCGCTTGTGTAAGTGTGCGTTTG
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Coding sequence (CDS) from alignment at chr16:202849..205175+

>NO16G00580.1 ID=NO16G00580.1|Name=NO16G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr16:202849..205175+ (Nannochloropsis oceanica)
ATGTGCGTGGGACCGACATTGACTCAGAGCAATACCCCTGCCATCCCTTT
GGAACCGTCGACGCTTCCTCCTTTGGTTGCTACCTCAGGGCTTGATGCCC
AGGACGGCGGCCCGGAGATAGACATTGTTGATCGATTGAACGCACAAACC
AAACGGTTGGCAGCCAAGAGCAAGAGCGAGCCGGGCGATGAAGACTATGC
TTGCTTGCAGCTTGTTAAGGGCGGGGCGACGGTATTCAAGCACCGCTTCT
GGCCCCTTCTGTACCTGTACTGGGCCTACACCGCGTATGGCATCGTCACG
GCTCCCTCCCTCGCCTTCGCCATCGGGGCCTTCATCCTAACGTACATCTA
CATCGATTTGTACGGCGCAGTTCTCCATATCGTGCTGGACAACCCGAATT
TCTTGAAGCTACCCTTGTTGGGCGAGGCCTGCTTGGAGTTTCAGTTCCAC
CACATCATTCCCCACGAAATCACCGTTCGATCCTACATCCATATTGCCGC
CGACCTCAACGGCATCATTGGATTGCAGTACGGCTGGCACCTGTTTTTGT
TCAAAGGTCTGGGGGACCCGGCGTTTCGCTGTCTGGCGTGCTGTGCAGTG
CTCAACGCCTACCTTGGCCAACTTGCGCACAGGCAGGCCCACATGCTGCC
CGAAAAGAGGGATCCTGTGGTTGATGTTCTCCAGCGCTTGGGCCTTATGG
TGGCGCCGGACACGCACCGCCGCCACCACAAGACGTACGATCAGGGCTTC
CCTATCTTGAGTGGCTGGTGCGATGCGCCCATCACCTTCCTCTTCCAGCA
CATCGTCTCCTCTCAGTGGATCTGGCTTTCGGCCTTCCTCCTTCTTACCT
TTGGGGGTATTGCGGGTGTGGCGAGGTTGTATCTGCCTGTCTTTGCCTGG
GCGATGGAGGGGAAGGGATGGGAAGGAGCGTGGGAGGGAGCGGCCGAATC
CTGGTCGAGGTCGTCGATGCTCTAA
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Synonyms
Publications