NO16G00480.1, NO16G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00480.1
Unique NameNO16G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1325
Alignment locationchr16:171511..173054 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:171511..173054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00480.1 vs.
Match: XP_005856061.1 (ribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i [Nannochloropsis gaditana CCMP526]; EKU20308.1 ribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 467.2 bits (1201), Expect = 5.300e-128
Identity = 238/313 (76.04%), Postives = 266/313 (84.98%), Query Frame = 0 
Query:   88 TAKWSTSNKPTSGQEERDWKQALLEDDDLDIDAIIAANKEALPRLPGILNTGPQDSVTTDGAFDLPDSFADEAASKPEARGSEEGVGPL--RSKMQGLGGKGDDSDEKKKAQQNARLSAWLGENGVWMKDKSGWGVPPHPLLLSSKTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKQKALEAFNGALPDDINEYFAIALMLIKQRALGAASFWSPYIDVLPTAEEVNPTLIWAEEDLALLETSPLVAATKSLKRKLRAEFDMLKENYLVGRPDVFDEKVYDFDAYLWAFINIFSRAIRVSLEDKKG 399
            T+K S++  P    EERDWKQALLEDDDLDIDAIIAANKE LPRLPGILN  P+D     G  DLP+SF DEA + P+    EEGVGPL  R+KMQGLGGKG+D +EKKKAQQNARL+ WLGENGVWM+DKSGWGVPPHPLLLSS+TIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDK+K+L AF+GALP DINEYFAIALMLIK+RALG +SFW+PYIDVLPT EEVNPTL+W E DLALLE SPLVAAT+SLKRKL AEF +L+E Y+  R DVFD  V+ F+AYLWAFINIFSRAIRV +  K+G
Sbjct:    7 TSKKSSAEAP----EERDWKQALLEDDDLDIDAIIAANKETLPRLPGILNASPRD-----GNVDLPESFLDEAVASPK---KEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDGALPADINEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRG 307
The following BLAST results are available for this feature:
BLAST of NO16G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856061.15.300e-12876.04ribulose- -bisphosphate carboxylase oxygenase smal... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00480NO16G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00480.1NO16G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00480.1.cds1NO16G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00480.1.cds2NO16G00480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00480.1 ID=NO16G00480.1|Name=NO16G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp
AAACACAGGCAAGCACGCTCAGATCCTGGTGTCAGTCCACTCCATTCCCA
AAATATATCATGCGGGCAAGACCTGCCACACGACAACGGCGGGGAGGCCA
TGCAGCTAGAGTTGTTCGTGCTTCTACTGCTGCTGCTGCTGTTGTTGCAG
CAACCCATATTTTGACCACCACCACGACTCTCCTCCTCTTCTCCTGCTCC
TCCATGCTGCCACCAGGTGTGGACGCGTTTGTCATCCGCCCGTCGAGCGG
CCCGAGCAGCAGCAGTTGCAGCAGCACGACCTCGATCCGTCCTTCCTCCT
TCTCTAGCGGCGGGAATCCCACCGCAAAATGGTCAACGAGCAATAAGCCC
ACGAGTGGGCAAGAAGAAAGGGATTGGAAACAAGCCTTGTTGGAAGACGA
CGACTTGGACATTGATGCGATCATCGCTGCGAACAAAGAGGCCCTGCCCC
GTCTGCCGGGTATCCTGAACACGGGCCCCCAGGACTCGGTCACGACCGAC
GGGGCATTCGATCTGCCTGACTCATTTGCGGATGAGGCGGCATCCAAGCC
TGAGGCACGCGGGAGCGAGGAAGGGGTCGGGCCTTTGCGGTCCAAGATGC
AGGGGTTGGGAGGAAAGGGCGACGACAGTGACGAGAAGAAGAAAGCACAG
CAGAATGCGAGGCTGTCCGCGTGGCTTGGCGAGAACGGAGTTTGGATGAA
GGATAAAAGTGGATGGGGGGTGCCACCTCACCCCCTGCTGCTCTCGAGCA
AGACGATTGATGAGATAGAGCTGGAGGACTCCGGGCGCGGCTTAATCTGT
AAGTACCCCATTAATATGGGCAACGCCCTCTTTCAGCTCCCCCTGTCCAT
CGTCATTGACAAGCAGAAGGCCTTGGAGGCGTTCAACGGGGCCCTTCCCG
ACGACATTAACGAGTACTTTGCGATTGCCTTGATGCTCATAAAGCAACGG
GCACTTGGCGCTGCCTCTTTTTGGTCCCCTTACATTGATGTTCTACCGAC
GGCAGAGGAGGTCAATCCCACCCTAATCTGGGCGGAGGAGGACTTGGCGT
TGCTGGAGACGAGTCCCTTGGTGGCGGCGACAAAGAGTCTGAAACGGAAA
TTGCGGGCGGAGTTTGACATGTTGAAGGAAAATTACCTGGTGGGGAGGCC
CGACGTGTTTGACGAGAAGGTGTACGATTTCGACGCGTATTTGTGGGCAT
TCATCAACATTTTCTCGAGGGCGATTCGGGTGTCGTTGGAGGATAAGAAG
GGGATTGCCGCGGGGGGGGGGGGGGGGAGGACGGGGCGGGGGAGACGATC
ATCATGTGCCCATACGCGGACTTGA
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protein sequence of NO16G00480.1

>NO16G00480.1-protein ID=NO16G00480.1-protein|Name=NO16G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MRARPATRQRRGGHAARVVRASTAAAAVVAATHILTTTTTLLLFSCSSML
PPGVDAFVIRPSSGPSSSSCSSTTSIRPSSFSSGGNPTAKWSTSNKPTSG
QEERDWKQALLEDDDLDIDAIIAANKEALPRLPGILNTGPQDSVTTDGAF
DLPDSFADEAASKPEARGSEEGVGPLRSKMQGLGGKGDDSDEKKKAQQNA
RLSAWLGENGVWMKDKSGWGVPPHPLLLSSKTIDEIELEDSGRGLICKYP
INMGNALFQLPLSIVIDKQKALEAFNGALPDDINEYFAIALMLIKQRALG
AASFWSPYIDVLPTAEEVNPTLIWAEEDLALLETSPLVAATKSLKRKLRA
EFDMLKENYLVGRPDVFDEKVYDFDAYLWAFINIFSRAIRVSLEDKKGIA
AGGGGGRTGRGRRSSCAHTRT*
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mRNA from alignment at chr16:171511..173054+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00480.1 ID=NO16G00480.1|Name=NO16G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp|location=Sequence derived from alignment at chr16:171511..173054+ (Nannochloropsis oceanica)
AAACACAGGCAAGCACGCTCAGATCCTGGTGTCAGTCCACTCCATTCCCA
AAATATATCATGCGGGCAAGACCTGCCACACGACAACGGCGGGGAGGCCA
TGCAGCTAGAGTTGTTCGTGCTTCTACTGCTGCTGCTGCTGTTGTTGCAG
CAACCCATATTTTGACCACCACCACGACTCTCCTCCTCTTCTCCTGCTCC
TCCATGCTGCCACCAGGTGTGGACGCGTTTGTCATCCGCCCGTCGAGCGG
CCCGAGCAGCAGCAGTTGCAGCAGCACGACCTCGATCCGTCCTTCCTCCT
TCTCTAGCGGCGGGAATCCCACCGCAAAATGGTCAACGAGCAATAAGCCC
ACGAGTGGGCAAGAAGAAAGGGATTGGAAACAAGCCTTGTTGGAAGACGA
CGACTTGGACATTGATGCGATCATCGCTGCGAACAAAGAGGTGACGCAGG
CAGGGAGAGCAGAGGGGGAGGGGAGGAGGGAGGCAGAGAGGGGGGAAGGG
GGAAAGAGAAGGAGATGCCTTCCTCGCGATTAAGAATTTGACAGCAGGTG
AAACCTCATGAACGTCTTGTCGGCCCTTTTTTTCTACTCATACACAGTAC
CAGTTCTCACGACCTTGATCCTCCCCCTGTTCCCTCGCACCCACTGAAAC
ATCAAACAGGCCCTGCCCCGTCTGCCGGGTATCCTGAACACGGGCCCCCA
GGACTCGGTCACGACCGACGGGGCATTCGATCTGCCTGACTCATTTGCGG
ATGAGGCGGCATCCAAGCCTGAGGCACGCGGGAGCGAGGAAGGGGTCGGG
CCTTTGCGGTCCAAGATGCAGGGGTTGGGAGGAAAGGGCGACGACAGTGA
CGAGAAGAAGAAAGCACAGCAGAATGCGAGGCTGTCCGCGTGGCTTGGCG
AGAACGGAGTTTGGATGAAGGATAAAAGTGGATGGGGGGTGCCACCTCAC
CCCCTGCTGCTCTCGAGCAAGACGATTGATGAGATAGAGCTGGAGGACTC
CGGGCGCGGCTTAATCTGTAAGTACCCCATTAATATGGGCAACGCCCTCT
TTCAGCTCCCCCTGTCCATCGTCATTGACAAGCAGAAGGCCTTGGAGGCG
TTCAACGGGGCCCTTCCCGACGACATTAACGAGTACTTTGCGATTGCCTT
GATGCTCATAAAGCAACGGGCACTTGGCGCTGCCTCTTTTTGGTCCCCTT
ACATTGATGTTCTACCGACGGCAGAGGAGGTCAATCCCACCCTAATCTGG
GCGGAGGAGGACTTGGCGTTGCTGGAGACGAGTCCCTTGGTGGCGGCGAC
AAAGAGTCTGAAACGGAAATTGCGGGCGGAGTTTGACATGTTGAAGGAAA
ATTACCTGGTGGGGAGGCCCGACGTGTTTGACGAGAAGGTGTACGATTTC
GACGCGTATTTGTGGGCATTCATCAACATTTTCTCGAGGGCGATTCGGGT
GTCGTTGGAGGATAAGAAGGGGATTGCCGCGGGGGGGGGGGGGGGGAGGA
CGGGGCGGGGGAGACGATCATCATGTGCCCATACGCGGACTTGA
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Coding sequence (CDS) from alignment at chr16:171511..173054+

>NO16G00480.1 ID=NO16G00480.1|Name=NO16G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr16:171511..173054+ (Nannochloropsis oceanica)
ATGCGGGCAAGACCTGCCACACGACAACGGCGGGGAGGCCATGCAGCTAG
AGTTGTTCGTGCTTCTACTGCTGCTGCTGCTGTTGTTGCAGCAACCCATA
TTTTGACCACCACCACGACTCTCCTCCTCTTCTCCTGCTCCTCCATGCTG
CCACCAGGTGTGGACGCGTTTGTCATCCGCCCGTCGAGCGGCCCGAGCAG
CAGCAGTTGCAGCAGCACGACCTCGATCCGTCCTTCCTCCTTCTCTAGCG
GCGGGAATCCCACCGCAAAATGGTCAACGAGCAATAAGCCCACGAGTGGG
CAAGAAGAAAGGGATTGGAAACAAGCCTTGTTGGAAGACGACGACTTGGA
CATTGATGCGATCATCGCTGCGAACAAAGAGGCCCTGCCCCGTCTGCCGG
GTATCCTGAACACGGGCCCCCAGGACTCGGTCACGACCGACGGGGCATTC
GATCTGCCTGACTCATTTGCGGATGAGGCGGCATCCAAGCCTGAGGCACG
CGGGAGCGAGGAAGGGGTCGGGCCTTTGCGGTCCAAGATGCAGGGGTTGG
GAGGAAAGGGCGACGACAGTGACGAGAAGAAGAAAGCACAGCAGAATGCG
AGGCTGTCCGCGTGGCTTGGCGAGAACGGAGTTTGGATGAAGGATAAAAG
TGGATGGGGGGTGCCACCTCACCCCCTGCTGCTCTCGAGCAAGACGATTG
ATGAGATAGAGCTGGAGGACTCCGGGCGCGGCTTAATCTGTAAGTACCCC
ATTAATATGGGCAACGCCCTCTTTCAGCTCCCCCTGTCCATCGTCATTGA
CAAGCAGAAGGCCTTGGAGGCGTTCAACGGGGCCCTTCCCGACGACATTA
ACGAGTACTTTGCGATTGCCTTGATGCTCATAAAGCAACGGGCACTTGGC
GCTGCCTCTTTTTGGTCCCCTTACATTGATGTTCTACCGACGGCAGAGGA
GGTCAATCCCACCCTAATCTGGGCGGAGGAGGACTTGGCGTTGCTGGAGA
CGAGTCCCTTGGTGGCGGCGACAAAGAGTCTGAAACGGAAATTGCGGGCG
GAGTTTGACATGTTGAAGGAAAATTACCTGGTGGGGAGGCCCGACGTGTT
TGACGAGAAGGTGTACGATTTCGACGCGTATTTGTGGGCATTCATCAACA
TTTTCTCGAGGGCGATTCGGGTGTCGTTGGAGGATAAGAAGGGGATTGCC
GCGGGGGGGGGGGGGGGGAGGACGGGGCGGGGGAGACGATCATCATGTGC
CCATACGCGGACTTGA
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Synonyms
Publications