NO16G00440.1, NO16G00440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00440.1
Unique NameNO16G00440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1068
Alignment locationchr16:162640..163707 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:162640..163707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00440.1 vs.
Match: ASU87515.1 (long-chain fatty acid elongase [Nannochloropsis sp.])

HSP 1 Score: 720.7 bits (1859), Expect = 2.200e-204
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0 
Query:    1 MSPAAQHKLVSPFSSLDPSALPPPLMTAQGVPFHPIWQLIPALSPFYTSYEKHFDATASFIFLYRHTWVPLLATALYFAFCYYGPKAMRHRKAFDLKTILCLWNLSLSLISFAGAVRVGTHLLYLLSPWGGFSFRDTICESPEATYADNATGLWCVVFTVSKLLELVDTIFVVLRKKPLIFLHWYHHATVLLCSWFGHVTFTPALYFMAINYSIHGVMYMYFFLMAIKKVPQWFNPMWLTVAQISQMFVGIWVIVMSCYYKYFEGAQGEGMGKGCAIDGRMIVAICLMYSTYLVLFVKFFVQRYAGQQKRKGAREVAVVGKEDKATMTDRKRHMELNILASDREEVKDEFRVKKE 356
            MSPAAQHKLVSPFSSLDPSALPPPLMTAQGVPFHPIWQLIPALSPFYTSYEKHFDATASFIFLYRHTWVPLLATALYFAFCYYGPKAMRHRKAFDLKTILCLWNLSLSLISFAGAVRVGTHLLYLLSPWGGFSFRDTICESPEATYADNATGLWCVVFTVSKLLELVDTIFVVLRKKPLIFLHWYHHATVLLCSWFGHVTFTPALYFMAINYSIHGVMYMYFFLMAIKKVPQWFNPMWLTVAQISQMFVGIWVIVMSCYYKYFEGAQGEGMGKGCAIDGRMIVAICLMYSTYLVLFVKFFVQRYAGQQKRKGAREVAVVGKEDKATMTDRKRHMELNILASDREEVKDEFRVKKE
Sbjct:    1 MSPAAQHKLVSPFSSLDPSALPPPLMTAQGVPFHPIWQLIPALSPFYTSYEKHFDATASFIFLYRHTWVPLLATALYFAFCYYGPKAMRHRKAFDLKTILCLWNLSLSLISFAGAVRVGTHLLYLLSPWGGFSFRDTICESPEATYADNATGLWCVVFTVSKLLELVDTIFVVLRKKPLIFLHWYHHATVLLCSWFGHVTFTPALYFMAINYSIHGVMYMYFFLMAIKKVPQWFNPMWLTVAQISQMFVGIWVIVMSCYYKYFEGAQGEGMGKGCAIDGRMIVAICLMYSTYLVLFVKFFVQRYAGQQKRKGAREVAVVGKEDKATMTDRKRHMELNILASDREEVKDEFRVKKE 355
The following BLAST results are available for this feature:
BLAST of NO16G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ASU87515.12.200e-204100.00long-chain fatty acid elongase [Nannochloropsis sp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00440NO16G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00440.1NO16G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00440.1.cds1NO16G00440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00440.1 ID=NO16G00440.1|Name=NO16G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp
ATGTCACCTGCTGCTCAACACAAGCTCGTCTCCCCATTTTCCTCCCTCGA
CCCCTCCGCCCTGCCCCCTCCCCTCATGACTGCCCAGGGCGTGCCCTTTC
ACCCCATCTGGCAGCTTATCCCGGCCCTGTCGCCCTTCTACACATCCTAT
GAGAAGCATTTTGATGCCACCGCCTCCTTTATTTTCCTCTATCGCCACAC
CTGGGTCCCTCTCCTGGCCACTGCCCTTTACTTCGCCTTTTGCTACTACG
GCCCGAAAGCGATGCGTCACCGCAAGGCTTTTGACCTCAAGACCATTCTC
TGCCTTTGGAATCTGTCGTTGTCACTCATAAGTTTTGCGGGCGCCGTCCG
TGTGGGTACCCATCTCTTGTACCTGCTGTCCCCGTGGGGCGGATTTTCCT
TTCGAGACACGATCTGCGAGTCCCCTGAAGCGACTTACGCCGACAACGCC
ACGGGCCTTTGGTGCGTCGTCTTCACTGTTTCCAAGCTCCTCGAATTAGT
CGACACTATATTTGTGGTGTTGCGGAAGAAGCCTCTCATTTTCCTGCATT
GGTACCACCATGCGACTGTCCTTTTGTGCTCATGGTTCGGGCATGTCACG
TTCACGCCAGCCCTTTATTTCATGGCAATTAATTACTCGATTCACGGCGT
GATGTACATGTACTTCTTTCTAATGGCAATTAAAAAAGTCCCACAGTGGT
TCAATCCTATGTGGCTGACGGTAGCGCAGATCAGCCAAATGTTTGTGGGC
ATTTGGGTGATTGTCATGAGTTGTTACTATAAGTATTTCGAGGGCGCTCA
GGGAGAAGGAATGGGGAAGGGATGCGCGATTGACGGCCGAATGATTGTGG
CGATTTGTTTAATGTATTCGACGTACCTAGTATTGTTCGTCAAGTTTTTT
GTACAACGATATGCGGGCCAACAAAAGCGCAAGGGAGCGAGGGAGGTGGC
GGTGGTGGGGAAGGAGGATAAGGCGACCATGACGGATAGGAAGCGGCATA
TGGAGCTAAACATCCTTGCTTCGGATCGAGAGGAAGTGAAAGACGAGTTT
CGGGTCAAAAAAGAATAA
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protein sequence of NO16G00440.1

>NO16G00440.1-protein ID=NO16G00440.1-protein|Name=NO16G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MSPAAQHKLVSPFSSLDPSALPPPLMTAQGVPFHPIWQLIPALSPFYTSY
EKHFDATASFIFLYRHTWVPLLATALYFAFCYYGPKAMRHRKAFDLKTIL
CLWNLSLSLISFAGAVRVGTHLLYLLSPWGGFSFRDTICESPEATYADNA
TGLWCVVFTVSKLLELVDTIFVVLRKKPLIFLHWYHHATVLLCSWFGHVT
FTPALYFMAINYSIHGVMYMYFFLMAIKKVPQWFNPMWLTVAQISQMFVG
IWVIVMSCYYKYFEGAQGEGMGKGCAIDGRMIVAICLMYSTYLVLFVKFF
VQRYAGQQKRKGAREVAVVGKEDKATMTDRKRHMELNILASDREEVKDEF
RVKKE*
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mRNA from alignment at chr16:162640..163707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00440.1 ID=NO16G00440.1|Name=NO16G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp|location=Sequence derived from alignment at chr16:162640..163707+ (Nannochloropsis oceanica)
ATGTCACCTGCTGCTCAACACAAGCTCGTCTCCCCATTTTCCTCCCTCGA
CCCCTCCGCCCTGCCCCCTCCCCTCATGACTGCCCAGGGCGTGCCCTTTC
ACCCCATCTGGCAGCTTATCCCGGCCCTGTCGCCCTTCTACACATCCTAT
GAGAAGCATTTTGATGCCACCGCCTCCTTTATTTTCCTCTATCGCCACAC
CTGGGTCCCTCTCCTGGCCACTGCCCTTTACTTCGCCTTTTGCTACTACG
GCCCGAAAGCGATGCGTCACCGCAAGGCTTTTGACCTCAAGACCATTCTC
TGCCTTTGGAATCTGTCGTTGTCACTCATAAGTTTTGCGGGCGCCGTCCG
TGTGGGTACCCATCTCTTGTACCTGCTGTCCCCGTGGGGCGGATTTTCCT
TTCGAGACACGATCTGCGAGTCCCCTGAAGCGACTTACGCCGACAACGCC
ACGGGCCTTTGGTGCGTCGTCTTCACTGTTTCCAAGCTCCTCGAATTAGT
CGACACTATATTTGTGGTGTTGCGGAAGAAGCCTCTCATTTTCCTGCATT
GGTACCACCATGCGACTGTCCTTTTGTGCTCATGGTTCGGGCATGTCACG
TTCACGCCAGCCCTTTATTTCATGGCAATTAATTACTCGATTCACGGCGT
GATGTACATGTACTTCTTTCTAATGGCAATTAAAAAAGTCCCACAGTGGT
TCAATCCTATGTGGCTGACGGTAGCGCAGATCAGCCAAATGTTTGTGGGC
ATTTGGGTGATTGTCATGAGTTGTTACTATAAGTATTTCGAGGGCGCTCA
GGGAGAAGGAATGGGGAAGGGATGCGCGATTGACGGCCGAATGATTGTGG
CGATTTGTTTAATGTATTCGACGTACCTAGTATTGTTCGTCAAGTTTTTT
GTACAACGATATGCGGGCCAACAAAAGCGCAAGGGAGCGAGGGAGGTGGC
GGTGGTGGGGAAGGAGGATAAGGCGACCATGACGGATAGGAAGCGGCATA
TGGAGCTAAACATCCTTGCTTCGGATCGAGAGGAAGTGAAAGACGAGTTT
CGGGTCAAAAAAGAATAA
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Coding sequence (CDS) from alignment at chr16:162640..163707+

>NO16G00440.1 ID=NO16G00440.1|Name=NO16G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr16:162640..163707+ (Nannochloropsis oceanica)
ATGTCACCTGCTGCTCAACACAAGCTCGTCTCCCCATTTTCCTCCCTCGA
CCCCTCCGCCCTGCCCCCTCCCCTCATGACTGCCCAGGGCGTGCCCTTTC
ACCCCATCTGGCAGCTTATCCCGGCCCTGTCGCCCTTCTACACATCCTAT
GAGAAGCATTTTGATGCCACCGCCTCCTTTATTTTCCTCTATCGCCACAC
CTGGGTCCCTCTCCTGGCCACTGCCCTTTACTTCGCCTTTTGCTACTACG
GCCCGAAAGCGATGCGTCACCGCAAGGCTTTTGACCTCAAGACCATTCTC
TGCCTTTGGAATCTGTCGTTGTCACTCATAAGTTTTGCGGGCGCCGTCCG
TGTGGGTACCCATCTCTTGTACCTGCTGTCCCCGTGGGGCGGATTTTCCT
TTCGAGACACGATCTGCGAGTCCCCTGAAGCGACTTACGCCGACAACGCC
ACGGGCCTTTGGTGCGTCGTCTTCACTGTTTCCAAGCTCCTCGAATTAGT
CGACACTATATTTGTGGTGTTGCGGAAGAAGCCTCTCATTTTCCTGCATT
GGTACCACCATGCGACTGTCCTTTTGTGCTCATGGTTCGGGCATGTCACG
TTCACGCCAGCCCTTTATTTCATGGCAATTAATTACTCGATTCACGGCGT
GATGTACATGTACTTCTTTCTAATGGCAATTAAAAAAGTCCCACAGTGGT
TCAATCCTATGTGGCTGACGGTAGCGCAGATCAGCCAAATGTTTGTGGGC
ATTTGGGTGATTGTCATGAGTTGTTACTATAAGTATTTCGAGGGCGCTCA
GGGAGAAGGAATGGGGAAGGGATGCGCGATTGACGGCCGAATGATTGTGG
CGATTTGTTTAATGTATTCGACGTACCTAGTATTGTTCGTCAAGTTTTTT
GTACAACGATATGCGGGCCAACAAAAGCGCAAGGGAGCGAGGGAGGTGGC
GGTGGTGGGGAAGGAGGATAAGGCGACCATGACGGATAGGAAGCGGCATA
TGGAGCTAAACATCCTTGCTTCGGATCGAGAGGAAGTGAAAGACGAGTTT
CGGGTCAAAAAAGAATAA
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Synonyms
Publications