NO16G00260.1, NO16G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00260.1
Unique NameNO16G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1399
Alignment locationchr16:95468..97334 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:95468..97334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00260NO16G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00260.1NO16G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00260.1.cds1NO16G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00260.1.cds2NO16G00260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00260.1.cds3NO16G00260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00260.1 ID=NO16G00260.1|Name=NO16G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1399bp
ACGCGAGGCCTACGAGCAGTCTGTCATTTGGAGGTGCAGAGTGGAAAGCA
AGGGAGTGAGGCAAGAGTGGCCAAGAAATGATGGCATACTTGCGCGACCA
TGACGCACTGCACTGCAACGAGTGGGGTCGGGAGAGCTTTATCCCCACGG
CAACTCAACATCACACGATAGCACACGATTATTCATGCCAGCATAAAGAT
TCGTCTTCCGCCCCACACGTACACAGGCAGGCCCTGAGTGTAGGCAGCTA
CATGAAGGCTTTAAATCCTCCGCACGCGAGTTTTGGATCTCTTCTTTGTC
TGGTGAGGAAATGAAGCAAGGCTCCGGCATGGACCGACGAAGCGCTGCTG
ATCTTGCTTTTGCCTCATCACAAAGATCTTGTTGGATTGAAAGGAAAGCA
TCCGGTACCCGACCAGAGCGACCAAACCGCGCGCCTGGCCAAATAAATGG
TACCTAAGACCTGGTGACTCAGGGGCACCAGACAGAAGGGTGAAAAGGGC
CCTGTGTCACAGAAGGCGAAAATCAAGGGCAGGGCTCTACCCGAGAGCCC
TGCCGTTACTAAGGAAGGCGATGGAGGATGGTGGGAGGGAGCAGCCGCGA
GCTGTGTGGGCGCAAGTCCTGCGCTGCTTGGCAGAATGAAATGGCTTATG
TTCTTGTTCTTAGGAATAGCCTGTACAGGCCTCCCATTTTTCGTCATGTG
TTCAGCACTCATCACGCATCCATGCCTTTTTATATCCCACCACCACACAT
CAACAACAGGAAGGCTTCGCGCATTCTGCGAGTGATGGTCGACCCTGCCA
ATGGCGCCGCTTCAGTTCCGGAGCCGACCGGCAAGAAAAAACAAGCAGCA
GGAACAGGAGGAGAAGGAGGAAGAGGGGAAGGAGGAGGAAGAGGAGAAGG
GAGCGGAAGAGGAGGAAGAGGGAAAGGAGGAGATGAAGGATTTTCAGCAA
GCGGCAGCTCAAGCGCGGCTGTCTCATCTCCTCCGCCCTCGGTACCTTGC
AACCCCCCACCCACAATCACACTTGGCGGGGTCACCAAGAAAAAGTTCCA
ACCCCGCGCACCGCTTATCAAAAAGGAGCCCCCTTCGTTCTCCTCCTCCG
ACTCCTCCTACCCGTCTCCCTCCTCCCTGGCCACGACAAAATCTTCTTTT
CGACGGGCCGGCGGAGGGGGGGAGAGGAACGGGGAGGGAAGCACTACGAG
AGGAGGGCGGGGGGGAGGGCGAGGGAGAGGAAGGGCGGGTGGGCAGATCA
TGTCGACTGGGAGTGTATATTTTTCGGGGGGGAATACGGCAGGAGGTGAA
GGAGGAGAGAGGGGAGGAGGAGGGGGAGCGAAAGCAGCGGGAGGAAAGAA
AGGTGGAGTTGTCGGTGAGGGCGAGGGAGGGGAGGGCAAGGGATTGTGA
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protein sequence of NO16G00260.1

>NO16G00260.1-protein ID=NO16G00260.1-protein|Name=NO16G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MVGGSSRELCGRKSCAAWQNEMAYVLVLRNSLYRPPIFRHVFSTHHASMP
FYIPPPHINNRKASRILRVMVDPANGAASVPEPTGKKKQAAGTGGEGGRG
EGGGRGEGSGRGGRGKGGDEGFSASGSSSAAVSSPPPSVPCNPPPTITLG
GVTKKKFQPRAPLIKKEPPSFSSSDSSYPSPSSLATTKSSFRRAGGGGER
NGEGSTTRGGRGGGRGRGRAGGQIMSTGSVYFSGGNTAGGEGGERGGGGG
AKAAGGKKGGVVGEGEGGEGKGL*
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mRNA from alignment at chr16:95468..97334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00260.1 ID=NO16G00260.1|Name=NO16G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr16:95468..97334- (Nannochloropsis oceanica)
ACGCGAGGCCTACGAGCAGTCTGTCATTTGGAGGTGCAGAGTGGAAAGCA
AGGGAGTGAGGCAAGAGTGGCCAAGAAATGATGGCATACTTGCGCGACCA
TGACGCACTGCACTGCAACGAGTGGGGTCGGGAGAGCTTTATCCCCACGG
CAACTCAACATCACACGATAGCACACGATTATTCATGCCAGCATAAAGAT
TCGTCTTCCGCCCCACACGTACACAGGCAGGCCCTGAGTGTAGGCAGCTA
CATGAAGGCTTTAAATCCTCCGCACGCGAGTTTTGGATCTCTTCTTTGTC
TGGTGAGGAAATGAAGCAAGGCTCCGGCATGGACCGACGAAGCGCTGCTG
ATCTTGCTTTTGCCTCATCACAAAGATCTTGTTGGATTGAAAGGAAAGCA
TCCGGTACCCGACCAGAGCGACCAAACCGCGCGCCTGGCCAAATAAATGG
TACCTAAGACCTGGTGACTCAGGGGCACCAGACAGAAGGGTGAAAAGGGC
CCTGTGTCACAGAAGGCGAAAATCAAGGGCAGGGCTCTACCCGAGAGCCC
TGCCGTTACTAAGGAAGGCGATGGAGGATGGTGGGAGGGAGCAGCCGCGA
GCTGTGTGGGCGCAAGTCCTGCGCTGCTTGGCAGAATGAAATGGCTTATG
TTCTTGTTCTTAGGAATAGCCTGTACAGGCCTCCCATTTTTCGTCATGTG
TTCAGCACTCATCACGCATCCATGCCTTTTTATATCCCACCACCACACAT
CAACAACAGGAAGGCTTCGCGCATTCTGCGAGTGATGGTCGACCCTGCCA
ATGGCGCCGCTTCAGTTCCGGAGCCGACCGGCAAGAAAAAACAAGCAGCA
GGAACAGGAGGAGAAGGAGGAAGAGGGGAAGGAGGAGGAAGAGGAGAAGG
GAGCGGAAGAGGAGGAAGAGGGAAAGGAGGAGATGAAGGATTTTCAGCAA
GCGGCAGCTCAAGGTATGTCATGACAATGGGGAGGTCTAGAGGAGGGATG
GGTGGTCCCAGTCATTAAATCACACACGCTATCATCAGAATATGGGTGAA
TCTTTAGATGTTTCGATGTCCTGGAGGCTTAACGATGGTCCACACCGATC
GATCTTCCGACAACAACGATCGATGTGATTCATCTCGAGGGGTGGGTAGA
GCGATGGATACATAGTAATGTCAGTTTTGCTTACCTCCTTTTATGCACAA
TAGCGCGGCTGTCTCATCTCCTCCGCCCTCGGTACCTTGCAACCCCCCAC
CCACAATCACACTTGGCGGGGTCACCAAGAAAAAGGTGGGTGAGTGCGAA
AGGAATATTTTTGCTTTCCTCCGTCACTTCTTCATGCCCTCTTGTCCCTT
TTCTGCTTTTGTCACGTACGCATGCGCCGCATCAACCGCCTTTCCGACCC
ATCATTCTGTCCTGTTCGTTTGCCCTCCGATCCTCTGGTTCCCACTTGAG
CCAGTGTTACCCTACCTACATCCTCCGTCCCTCTTTTCCTCCCTCTCTCT
CTTCCTCCCTCAGTTCCAACCCCGCGCACCGCTTATCAAAAAGGAGCCCC
CTTCGTTCTCCTCCTCCGACTCCTCCTACCCGTCTCCCTCCTCCCTGGCC
ACGACAAAATCTTCTTTTCGACGGGCCGGCGGAGGGGGGGAGAGGAACGG
GGAGGGAAGCACTACGAGAGGAGGGCGGGGGGGAGGGCGAGGGAGAGGAA
GGGCGGGTGGGCAGATCATGTCGACTGGGAGTGTATATTTTTCGGGGGGG
AATACGGCAGGAGGTGAAGGAGGAGAGAGGGGAGGAGGAGGGGGAGCGAA
AGCAGCGGGAGGAAAGAAAGGTGGAGTTGTCGGTGAGGGCGAGGGAGGGG
AGGGCAAGGGATTGTGA
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Coding sequence (CDS) from alignment at chr16:95468..97334-

>NO16G00260.1 ID=NO16G00260.1|Name=NO16G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr16:95468..97334- (Nannochloropsis oceanica)
ATGGTGGGAGGGAGCAGCCGCGAGCTGTGTGGGCGCAAGTCCTGCGCTGC
TTGGCAGAATGAAATGGCTTATGTTCTTGTTCTTAGGAATAGCCTGTACA
GGCCTCCCATTTTTCGTCATGTGTTCAGCACTCATCACGCATCCATGCCT
TTTTATATCCCACCACCACACATCAACAACAGGAAGGCTTCGCGCATTCT
GCGAGTGATGGTCGACCCTGCCAATGGCGCCGCTTCAGTTCCGGAGCCGA
CCGGCAAGAAAAAACAAGCAGCAGGAACAGGAGGAGAAGGAGGAAGAGGG
GAAGGAGGAGGAAGAGGAGAAGGGAGCGGAAGAGGAGGAAGAGGGAAAGG
AGGAGATGAAGGATTTTCAGCAAGCGGCAGCTCAAGCGCGGCTGTCTCAT
CTCCTCCGCCCTCGGTACCTTGCAACCCCCCACCCACAATCACACTTGGC
GGGGTCACCAAGAAAAAGTTCCAACCCCGCGCACCGCTTATCAAAAAGGA
GCCCCCTTCGTTCTCCTCCTCCGACTCCTCCTACCCGTCTCCCTCCTCCC
TGGCCACGACAAAATCTTCTTTTCGACGGGCCGGCGGAGGGGGGGAGAGG
AACGGGGAGGGAAGCACTACGAGAGGAGGGCGGGGGGGAGGGCGAGGGAG
AGGAAGGGCGGGTGGGCAGATCATGTCGACTGGGAGTGTATATTTTTCGG
GGGGGAATACGGCAGGAGGTGAAGGAGGAGAGAGGGGAGGAGGAGGGGGA
GCGAAAGCAGCGGGAGGAAAGAAAGGTGGAGTTGTCGGTGAGGGCGAGGG
AGGGGAGGGCAAGGGATTGTGA
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Synonyms
Publications