NO16G00150.2, NO16G00150.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00150.2
Unique NameNO16G00150.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1706
Alignment locationchr16:53099..55353 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:53099..55353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00150.2 vs.
Match: EWM22821.1 (hypothetical protein Naga_100375g4 [Nannochloropsis gaditana])

HSP 1 Score: 283.5 bits (724), Expect = 7.400e-73
Identity = 145/247 (58.70%), Postives = 182/247 (73.68%), Query Frame = 0 
Query:   42 KVSITLAYEKDKNTDAVAGGYYGMHSKEWTVQQGVSPVVSPAYAWRGLRS-KPSASSTSAPSSPSSTASPSPTRIGHREYRGEVKVAIRWSQTEPEFRPYVHLLSHCVARTQAICRPLYRLADPLVASLLDVFVLSMCVDVWYKGMLLPAYAFLTQNRSILLAAFLACFLPLALLWVPALVFFPITLLMFWGSFLLFLCLTPVGCALVWFLLASEPAQSKLLRPFLQICLKTKGVRGWFTLPCSPYS 288
            + +ITL YEK+    AV+G +Y     EWT+Q G+ PV  P Y WRGLRS +PS+S  S   S S++AS SPT++GHRE+RGEVK AIRWSQTEPE+R YV  LS+CV+RTQA+ +PL    DP++ + LD+FVLS+ V+ W+K ML+PA+ FLTQNRS+++AA     LP  LLWVPALVFFPITLL+FW SF   LCLTP+GCALVW LLAS+P Q +L+RP  Q CL +   R W TLP SPYS
Sbjct:   93 QATITLVYEKENKKQAVSG-FYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQAS---STSTSASSSPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDIFVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLTLPRSPYS 335
The following BLAST results are available for this feature:
BLAST of NO16G00150.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22821.17.400e-7358.70hypothetical protein Naga_100375g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00150NO16G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00150.2NO16G00150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00150.2.cds1NO16G00150.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.2.cds2NO16G00150.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.2.cds3NO16G00150.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.2.cds4NO16G00150.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00150.2 ID=NO16G00150.2|Name=NO16G00150.2|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp
ACAGTAGTAGAATGGGTCAGTCATGGCGGCGACCGGAGAGTGAGCCGCGC
ATCGGCAAGTTGGAGTGTTTCGTAGAACGAGCTAGAAATCTCAACCCTCA
GAGCATCGAGGTAAAAGGGGGAAAGGAAGAGGAAGAGTAGTCAAGAAAAA
CTGGTGGCAGGGCCGGTAAAAAGATGTAGGTGGGACACATACGTAGGATG
TGTGTCTCGACGTTGGTGTGAGGCTGTGCTTAGCCAACCCGCATTGTCCT
GAACGGCTACCATTCTCCTTTCTCCCTTCCCCACCCGGACAGGTGGTCAA
AGACTGGCCGAACTGCAACGCCTTCCTAGTCTTCTCCCTGAGGCTTTCAC
GGTTCCATCGGGCGGAAAGCAGTCGGAAAATTGCTATGCAGAATGAGCTA
CCGCAGACAGCGCCCATATGGCGAGAAAAGGTGGCGGAATGGAACGATGT
ACCGTACCCGCCTAAGTACGAACGGGAAGGGAGAGGGAGGGAGTGAGGAA
GTAGGATTTTAATCTCGTGCTGCTGGCATTTAACTGAATTTTCGGGGAAG
AGATATCTTGTGTGCATTGAACGACATGTCTCATAACTCCGGACTTGCTC
CTCTTCCATCTCAGCCACCAGTCACTTACTGTCCTCCCTCCCTCCCTCCC
CTCCTTCCTCTCTCTCTCCCCTTGGTCCCTCCCCCTCGTCCCAGAAATAA
AGTGAGCATTACCCTAGCGTACGAGAAGGACAAGAACACAGACGCTGTCG
CGGGCGGCTACTACGGCATGCATAGCAAGGAATGGACAGTGCAACAAGGC
GTCAGTCCTGTGGTCAGCCCGGCCTACGCCTGGCGGGGTTTGCGTTCCAA
GCCCTCGGCCTCGAGCACCTCCGCCCCCTCCTCCCCCTCCTCCACCGCCT
CCCCTTCTCCGACCAGGATCGGGCATAGAGAGTACCGGGGCGAGGTCAAG
GTCGCCATTCGATGGAGCCAAACGGAGCCTGAGTTCCGGCCCTACGTCCA
CTTACTCTCCCACTGCGTCGCGCGCACCCAAGCCATCTGCAGGCCCCTCT
ACCGCCTCGCTGACCCCCTCGTCGCCTCCCTCCTCGACGTCTTTGTCCTT
TCCATGTGTGTCGACGTTTGGTACAAGGGCATGCTGCTCCCCGCCTATGC
CTTCTTGACTCAGAACAGGTCTATCCTGCTGGCTGCGTTCTTGGCATGTT
TCCTCCCTCTTGCCCTCCTCTGGGTTCCTGCCTTGGTCTTCTTCCCCATT
ACGCTGCTTATGTTTTGGGGCTCCTTCCTCCTCTTCCTCTGCCTCACCCC
CGTCGGCTGTGCCTTGGTATGGTTCCTCCTCGCCTCGGAACCTGCTCAGT
CCAAGCTCCTGCGCCCCTTCCTCCAGATATGCCTGAAAACAAAGGGTGTG
AGAGGATGGTTTACTCTGCCTTGCTCTCCGTACAGCCCTTGAGGGGGAGG
GCAATAAGGAGTCAAGCGGTGAGGGAGAAAGAGGGGAGGCGGAGGACACA
GAAATCTTGAAGGTAGAGAGGTTGGGAGGGGGGGAGAAAGGGAGGATAAG
ACAGAGGGAAGGACAGACGGTTGTTGTTAAAGTACTCGTATTTTTCTCTA
CGTGTGTTAAAAGGCAGGGAGGAAGGGAAGGAATGAAGGAGGGAAAGTCA
ATACGACATTTTTGTGTACGTTACGATAAAACAAAAGGAAAAATAGGAAT
GACAAA
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protein sequence of NO16G00150.2

>NO16G00150.2-protein ID=NO16G00150.2-protein|Name=NO16G00150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MSHNSGLAPLPSQPPVTYCPPSLPPLLPLSLPLVPPPRPRNKVSITLAYE
KDKNTDAVAGGYYGMHSKEWTVQQGVSPVVSPAYAWRGLRSKPSASSTSA
PSSPSSTASPSPTRIGHREYRGEVKVAIRWSQTEPEFRPYVHLLSHCVAR
TQAICRPLYRLADPLVASLLDVFVLSMCVDVWYKGMLLPAYAFLTQNRSI
LLAAFLACFLPLALLWVPALVFFPITLLMFWGSFLLFLCLTPVGCALVWF
LLASEPAQSKLLRPFLQICLKTKGVRGWFTLPCSPYSP*
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mRNA from alignment at chr16:53099..55353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00150.2 ID=NO16G00150.2|Name=NO16G00150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp|location=Sequence derived from alignment at chr16:53099..55353- (Nannochloropsis oceanica)
ACAGTAGTAGAATGGGTCAGTCATGGCGGCGACCGGAGAGTGAGCCGCGC
ATCGGCAAGTTGGAGTGTTTCGTAGAACGAGCTAGAAATCTCAACCCTCA
GAGCATCGAGGTAAAAGGGGGAAAGGAAGAGGAAGAGTAGTCAAGAAAAA
CTGGTGGCAGGGCCGGTAAAAAGATGTAGGTGGGACACATACGTAGGATG
TGTGTCTCGACGTTGGTGTGAGGCTGTGCTTAGCCAACCCGCATTGTCCT
GAACGGCTACCATTCTCCTTTCTCCCTTCCCCACCCGGACAGGTGGTCAA
AGACTGGCCGAACTGCAACGCCTTCCTAGTCTTCTCCCTGAGGCTTTCAC
GGTTCCATCGGGCGGAAAGCAGTCGGAAAATTGTACGTGGGTGGATGGGA
GGGAGGACGAGAGGAAAGTGGAAGCGAGCCTGCTCGTCCTTGCCCACTTG
CCCATGCTTATAGGGCGAGAAAGAATTAAGTGTATGACCTCCACGCACTC
ACACTTCTCCTCCTTTACGACACCTGCACGACGTGTTACTTACAGGCTAT
GCAGAATGAGCTACCGCAGACAGCGCCCATATGGCGAGAAAAGGTGGCGG
AATGGAACGATGTACCGTACCCGCCTAAGTACGAACGGGAAGGGAGAGGG
AGGGAGTGAGGAAGTAGGATTTTAATCTCGTGCTGCTGGCATTTAACTGA
ATTTTCGGGGAAGAGATATCTTGTGTGCATTGAACGACATGTCTCATAAC
TCCGGACTTGCTCCTCTTCCATCTCAGCCACCAGTCACTTACTGTCCTCC
CTCCCTCCCTCCCCTCCTTCCTCTCTCTCTCCCCTTGGTCCCTCCCCCTC
GTCCCAGAAATAAAGTGAGCATTACCCTAGCGTACGAGAAGGACAAGAAC
ACAGACGCTGTCGCGGGCGGCTACTACGGCATGCATAGCAAGGAATGGAC
AGTGCAACAAGGTAGGGAGGGAGGGAGGGAGGGAGAGAAAGATGGATGGA
CGTAAGGACAAAGAAGAAGACTTTCTTTCAAGCGGTTCGGCGGAGATACT
CATTAAGCCTTCCTTCCCACCCTCCCTGTTACCCTCCTTCCCGCGCTCCT
TTGGACAGGCGTCAGTCCTGTGGTCAGCCCGGCCTACGCCTGGCGGGGTT
TGCGTTCCAAGCCCTCGGCCTCGAGCACCTCCGCCCCCTCCTCCCCCTCC
TCCACCGCCTCCCCTTCTCCGACCAGGATCGGGCATAGAGAGTACCGGGG
CGAGGTCAAGGTCGCCATTCGATGGTGCGTATCCCCGTCCTCCCTCCCGC
CCTTCCTCCTCTCAGCCTTTCTTCATACGCTCCCCCCCCCTCCCTCCCTC
CCTCCCTCAGGAGCCAAACGGAGCCTGAGTTCCGGCCCTACGTCCACTTA
CTCTCCCACTGCGTCGCGCGCACCCAAGCCATCTGCAGGCCCCTCTACCG
CCTCGCTGACCCCCTCGTCGCCTCCCTCCTCGACGTCTTTGTCCTTTCCA
TGTGTGTCGACGTTTGGTACAAGGGCATGCTGCTCCCCGCCTATGCCTTC
TTGACTCAGAACAGGTCTATCCTGCTGGCTGCGTTCTTGGCATGTTTCCT
CCCTCTTGCCCTCCTCTGGGTTCCTGCCTTGGTCTTCTTCCCCATTACGC
TGCTTATGTTTTGGGTGAGAAGGGAGGGAAGGAAGGGGGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGAAAGGGGGGAGTGTTTTCAGGAAATTCGCTTTT
TGAATTTTCCATTTTTACACTCATCTTCCAAATCCACCCACCCATCCCCC
CCTCCCGCTTATTTCAGGGCTCCTTCCTCCTCTTCCTCTGCCTCACCCCC
GTCGGCTGTGCCTTGGTATGGTTCCTCCTCGCCTCGGAACCTGCTCAGTC
CAAGCTCCTGCGCCCCTTCCTCCAGATATGCCTGAAAACAAAGGGTGTGA
GAGGATGGTTTACTCTGCCTTGCTCTCCGTACAGCCCTTGAGGGGGAGGG
CAATAAGGAGTCAAGCGGTGAGGGAGAAAGAGGGGAGGCGGAGGACACAG
AAATCTTGAAGGTAGAGAGGTTGGGAGGGGGGGAGAAAGGGAGGATAAGA
CAGAGGGAAGGACAGACGGTTGTTGTTAAAGTACTCGTATTTTTCTCTAC
GTGTGTTAAAAGGCAGGGAGGAAGGGAAGGAATGAAGGAGGGAAAGTCAA
TACGACATTTTTGTGTACGTTACGATAAAACAAAAGGAAAAATAGGAATG
ACAAA
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Coding sequence (CDS) from alignment at chr16:53099..55353-

>NO16G00150.2 ID=NO16G00150.2|Name=NO16G00150.2|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr16:53099..55353- (Nannochloropsis oceanica)
ATGTCTCATAACTCCGGACTTGCTCCTCTTCCATCTCAGCCACCAGTCAC
TTACTGTCCTCCCTCCCTCCCTCCCCTCCTTCCTCTCTCTCTCCCCTTGG
TCCCTCCCCCTCGTCCCAGAAATAAAGTGAGCATTACCCTAGCGTACGAG
AAGGACAAGAACACAGACGCTGTCGCGGGCGGCTACTACGGCATGCATAG
CAAGGAATGGACAGTGCAACAAGGCGTCAGTCCTGTGGTCAGCCCGGCCT
ACGCCTGGCGGGGTTTGCGTTCCAAGCCCTCGGCCTCGAGCACCTCCGCC
CCCTCCTCCCCCTCCTCCACCGCCTCCCCTTCTCCGACCAGGATCGGGCA
TAGAGAGTACCGGGGCGAGGTCAAGGTCGCCATTCGATGGAGCCAAACGG
AGCCTGAGTTCCGGCCCTACGTCCACTTACTCTCCCACTGCGTCGCGCGC
ACCCAAGCCATCTGCAGGCCCCTCTACCGCCTCGCTGACCCCCTCGTCGC
CTCCCTCCTCGACGTCTTTGTCCTTTCCATGTGTGTCGACGTTTGGTACA
AGGGCATGCTGCTCCCCGCCTATGCCTTCTTGACTCAGAACAGGTCTATC
CTGCTGGCTGCGTTCTTGGCATGTTTCCTCCCTCTTGCCCTCCTCTGGGT
TCCTGCCTTGGTCTTCTTCCCCATTACGCTGCTTATGTTTTGGGGCTCCT
TCCTCCTCTTCCTCTGCCTCACCCCCGTCGGCTGTGCCTTGGTATGGTTC
CTCCTCGCCTCGGAACCTGCTCAGTCCAAGCTCCTGCGCCCCTTCCTCCA
GATATGCCTGAAAACAAAGGGTGTGAGAGGATGGTTTACTCTGCCTTGCT
CTCCGTACAGCCCTTGA
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Synonyms
Publications