NO16G00150.1, NO16G00150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00150.1
Unique NameNO16G00150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1295
Alignment locationchr16:53099..55353 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:53099..55353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00150.1 vs.
Match: EWM22821.1 (hypothetical protein Naga_100375g4 [Nannochloropsis gaditana])

HSP 1 Score: 414.1 bits (1063), Expect = 4.300e-112
Identity = 207/339 (61.06%), Postives = 255/339 (75.22%), Query Frame = 0 
Query:    1 MGQSWRRPESEPRIGKLECFVERARNLNPQSIEVVKDWPNCNAFLVFSLRLSRFHRAESSRKIAMQNELPQTAPIWREKVAEWNDVPYPPKNKVSITLAYEKDKNTDAVAGGYYGMHSKEWTVQQGVSPVVSPAYAWRGLRS-KPSASSTSAPSSPSSTASPSPTRIGHREYRGEVKVAIRWSQTEPEFRPYVHLLSHCVARTQAICRPLYRLADPLVASLLDVFVLSMCVDVWYKGMLLPAYAFLTQNRSILLAAFLACFLPLALLWVPALVFFPITLLMFWGSFLLFLCLTPVGCALVWFLLASEPAQSKLLRPFLQICLKTKGVRGWFTLPCSPYS 339
            MGQ+WRRPE EPR+GK E F+ERARNLNPQ++E VKDW NC+AF +F+L  S  HRAESSRK A++  L QTAPIW+EKVAEW DV YP   + +ITL YEK+    AV+G +Y     EWT+Q G+ PV  P Y WRGLRS +PS+S  S   S S++AS SPT++GHRE+RGEVK AIRWSQTEPE+R YV  LS+CV+RTQA+ +PL    DP++ + LD+FVLS+ V+ W+K ML+PA+ FLTQNRS+++AA     LP  LLWVPALVFFPITLL+FW SF   LCLTP+GCALVW LLAS+P Q +L+RP  Q CL +   R W TLP SPYS
Sbjct:    1 MGQAWRRPEGEPRVGKAELFIERARNLNPQAVERVKDWVNCDAFFIFNLGRSEAHRAESSRKNAVEYGLIQTAPIWQEKVAEWQDVLYPSPVQATITLVYEKENKKQAVSG-FYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQAS---STSTSASSSPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDIFVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLTLPRSPYS 335
The following BLAST results are available for this feature:
BLAST of NO16G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22821.14.300e-11261.06hypothetical protein Naga_100375g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00150NO16G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00150.1NO16G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00150.1.cds1NO16G00150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.1.cds2NO16G00150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.1.cds3NO16G00150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.1.cds4NO16G00150.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.1.cds5NO16G00150.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.1.cds6NO16G00150.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00150.1.cds7NO16G00150.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00150.1 ID=NO16G00150.1|Name=NO16G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp
ACAGTAGTAGAATGGGTCAGTCATGGCGGCGACCGGAGAGTGAGCCGCGC
ATCGGCAAGTTGGAGTGTTTCGTAGAACGAGCTAGAAATCTCAACCCTCA
GAGCATCGAGGTGGTCAAAGACTGGCCGAACTGCAACGCCTTCCTAGTCT
TCTCCCTGAGGCTTTCACGGTTCCATCGGGCGGAAAGCAGTCGGAAAATT
GCTATGCAGAATGAGCTACCGCAGACAGCGCCCATATGGCGAGAAAAGGT
GGCGGAATGGAACGATGTACCGTACCCGCCTAAAAATAAAGTGAGCATTA
CCCTAGCGTACGAGAAGGACAAGAACACAGACGCTGTCGCGGGCGGCTAC
TACGGCATGCATAGCAAGGAATGGACAGTGCAACAAGGCGTCAGTCCTGT
GGTCAGCCCGGCCTACGCCTGGCGGGGTTTGCGTTCCAAGCCCTCGGCCT
CGAGCACCTCCGCCCCCTCCTCCCCCTCCTCCACCGCCTCCCCTTCTCCG
ACCAGGATCGGGCATAGAGAGTACCGGGGCGAGGTCAAGGTCGCCATTCG
ATGGAGCCAAACGGAGCCTGAGTTCCGGCCCTACGTCCACTTACTCTCCC
ACTGCGTCGCGCGCACCCAAGCCATCTGCAGGCCCCTCTACCGCCTCGCT
GACCCCCTCGTCGCCTCCCTCCTCGACGTCTTTGTCCTTTCCATGTGTGT
CGACGTTTGGTACAAGGGCATGCTGCTCCCCGCCTATGCCTTCTTGACTC
AGAACAGGTCTATCCTGCTGGCTGCGTTCTTGGCATGTTTCCTCCCTCTT
GCCCTCCTCTGGGTTCCTGCCTTGGTCTTCTTCCCCATTACGCTGCTTAT
GTTTTGGGGCTCCTTCCTCCTCTTCCTCTGCCTCACCCCCGTCGGCTGTG
CCTTGGTATGGTTCCTCCTCGCCTCGGAACCTGCTCAGTCCAAGCTCCTG
CGCCCCTTCCTCCAGATATGCCTGAAAACAAAGGGTGTGAGAGGATGGTT
TACTCTGCCTTGCTCTCCGTACAGCCCTTGAGGGGGAGGGCAATAAGGAG
TCAAGCGGTGAGGGAGAAAGAGGGGAGGCGGAGGACACAGAAATCTTGAA
GGTAGAGAGGTTGGGAGGGGGGGAGAAAGGGAGGATAAGACAGAGGGAAG
GACAGACGGTTGTTGTTAAAGTACTCGTATTTTTCTCTACGTGTGTTAAA
AGGCAGGGAGGAAGGGAAGGAATGAAGGAGGGAAAGTCAATACGACATTT
TTGTGTACGTTACGATAAAACAAAAGGAAAAATAGGAATGACAAA
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protein sequence of NO16G00150.1

>NO16G00150.1-protein ID=NO16G00150.1-protein|Name=NO16G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MGQSWRRPESEPRIGKLECFVERARNLNPQSIEVVKDWPNCNAFLVFSLR
LSRFHRAESSRKIAMQNELPQTAPIWREKVAEWNDVPYPPKNKVSITLAY
EKDKNTDAVAGGYYGMHSKEWTVQQGVSPVVSPAYAWRGLRSKPSASSTS
APSSPSSTASPSPTRIGHREYRGEVKVAIRWSQTEPEFRPYVHLLSHCVA
RTQAICRPLYRLADPLVASLLDVFVLSMCVDVWYKGMLLPAYAFLTQNRS
ILLAAFLACFLPLALLWVPALVFFPITLLMFWGSFLLFLCLTPVGCALVW
FLLASEPAQSKLLRPFLQICLKTKGVRGWFTLPCSPYSP*
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mRNA from alignment at chr16:53099..55353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00150.1 ID=NO16G00150.1|Name=NO16G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp|location=Sequence derived from alignment at chr16:53099..55353- (Nannochloropsis oceanica)
ACAGTAGTAGAATGGGTCAGTCATGGCGGCGACCGGAGAGTGAGCCGCGC
ATCGGCAAGTTGGAGTGTTTCGTAGAACGAGCTAGAAATCTCAACCCTCA
GAGCATCGAGGTAAAAGGGGGAAAGGAAGAGGAAGAGTAGTCAAGAAAAA
CTGGTGGCAGGGCCGGTAAAAAGATGTAGGTGGGACACATACGTAGGATG
TGTGTCTCGACGTTGGTGTGAGGCTGTGCTTAGCCAACCCGCATTGTCCT
GAACGGCTACCATTCTCCTTTCTCCCTTCCCCACCCGGACAGGTGGTCAA
AGACTGGCCGAACTGCAACGCCTTCCTAGTCTTCTCCCTGAGGCTTTCAC
GGTTCCATCGGGCGGAAAGCAGTCGGAAAATTGTACGTGGGTGGATGGGA
GGGAGGACGAGAGGAAAGTGGAAGCGAGCCTGCTCGTCCTTGCCCACTTG
CCCATGCTTATAGGGCGAGAAAGAATTAAGTGTATGACCTCCACGCACTC
ACACTTCTCCTCCTTTACGACACCTGCACGACGTGTTACTTACAGGCTAT
GCAGAATGAGCTACCGCAGACAGCGCCCATATGGCGAGAAAAGGTGGCGG
AATGGAACGATGTACCGTACCCGCCTAAGTACGAACGGGAAGGGAGAGGG
AGGGAGTGAGGAAGTAGGATTTTAATCTCGTGCTGCTGGCATTTAACTGA
ATTTTCGGGGAAGAGATATCTTGTGTGCATTGAACGACATGTCTCATAAC
TCCGGACTTGCTCCTCTTCCATCTCAGCCACCAGTCACTTACTGTCCTCC
CTCCCTCCCTCCCCTCCTTCCTCTCTCTCTCCCCTTGGTCCCTCCCCCTC
GTCCCAGAAATAAAGTGAGCATTACCCTAGCGTACGAGAAGGACAAGAAC
ACAGACGCTGTCGCGGGCGGCTACTACGGCATGCATAGCAAGGAATGGAC
AGTGCAACAAGGTAGGGAGGGAGGGAGGGAGGGAGAGAAAGATGGATGGA
CGTAAGGACAAAGAAGAAGACTTTCTTTCAAGCGGTTCGGCGGAGATACT
CATTAAGCCTTCCTTCCCACCCTCCCTGTTACCCTCCTTCCCGCGCTCCT
TTGGACAGGCGTCAGTCCTGTGGTCAGCCCGGCCTACGCCTGGCGGGGTT
TGCGTTCCAAGCCCTCGGCCTCGAGCACCTCCGCCCCCTCCTCCCCCTCC
TCCACCGCCTCCCCTTCTCCGACCAGGATCGGGCATAGAGAGTACCGGGG
CGAGGTCAAGGTCGCCATTCGATGGTGCGTATCCCCGTCCTCCCTCCCGC
CCTTCCTCCTCTCAGCCTTTCTTCATACGCTCCCCCCCCCTCCCTCCCTC
CCTCCCTCAGGAGCCAAACGGAGCCTGAGTTCCGGCCCTACGTCCACTTA
CTCTCCCACTGCGTCGCGCGCACCCAAGCCATCTGCAGGCCCCTCTACCG
CCTCGCTGACCCCCTCGTCGCCTCCCTCCTCGACGTCTTTGTCCTTTCCA
TGTGTGTCGACGTTTGGTACAAGGGCATGCTGCTCCCCGCCTATGCCTTC
TTGACTCAGAACAGGTCTATCCTGCTGGCTGCGTTCTTGGCATGTTTCCT
CCCTCTTGCCCTCCTCTGGGTTCCTGCCTTGGTCTTCTTCCCCATTACGC
TGCTTATGTTTTGGGTGAGAAGGGAGGGAAGGAAGGGGGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGAAAGGGGGGAGTGTTTTCAGGAAATTCGCTTTT
TGAATTTTCCATTTTTACACTCATCTTCCAAATCCACCCACCCATCCCCC
CCTCCCGCTTATTTCAGGGCTCCTTCCTCCTCTTCCTCTGCCTCACCCCC
GTCGGCTGTGCCTTGGTATGGTTCCTCCTCGCCTCGGAACCTGCTCAGTC
CAAGCTCCTGCGCCCCTTCCTCCAGATATGCCTGAAAACAAAGGGTGTGA
GAGGATGGTTTACTCTGCCTTGCTCTCCGTACAGCCCTTGAGGGGGAGGG
CAATAAGGAGTCAAGCGGTGAGGGAGAAAGAGGGGAGGCGGAGGACACAG
AAATCTTGAAGGTAGAGAGGTTGGGAGGGGGGGAGAAAGGGAGGATAAGA
CAGAGGGAAGGACAGACGGTTGTTGTTAAAGTACTCGTATTTTTCTCTAC
GTGTGTTAAAAGGCAGGGAGGAAGGGAAGGAATGAAGGAGGGAAAGTCAA
TACGACATTTTTGTGTACGTTACGATAAAACAAAAGGAAAAATAGGAATG
ACAAA
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Coding sequence (CDS) from alignment at chr16:53099..55353-

>NO16G00150.1 ID=NO16G00150.1|Name=NO16G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr16:53099..55353- (Nannochloropsis oceanica)
ATGGGTCAGTCATGGCGGCGACCGGAGAGTGAGCCGCGCATCGGCAAGTT
GGAGTGTTTCGTAGAACGAGCTAGAAATCTCAACCCTCAGAGCATCGAGG
TGGTCAAAGACTGGCCGAACTGCAACGCCTTCCTAGTCTTCTCCCTGAGG
CTTTCACGGTTCCATCGGGCGGAAAGCAGTCGGAAAATTGCTATGCAGAA
TGAGCTACCGCAGACAGCGCCCATATGGCGAGAAAAGGTGGCGGAATGGA
ACGATGTACCGTACCCGCCTAAAAATAAAGTGAGCATTACCCTAGCGTAC
GAGAAGGACAAGAACACAGACGCTGTCGCGGGCGGCTACTACGGCATGCA
TAGCAAGGAATGGACAGTGCAACAAGGCGTCAGTCCTGTGGTCAGCCCGG
CCTACGCCTGGCGGGGTTTGCGTTCCAAGCCCTCGGCCTCGAGCACCTCC
GCCCCCTCCTCCCCCTCCTCCACCGCCTCCCCTTCTCCGACCAGGATCGG
GCATAGAGAGTACCGGGGCGAGGTCAAGGTCGCCATTCGATGGAGCCAAA
CGGAGCCTGAGTTCCGGCCCTACGTCCACTTACTCTCCCACTGCGTCGCG
CGCACCCAAGCCATCTGCAGGCCCCTCTACCGCCTCGCTGACCCCCTCGT
CGCCTCCCTCCTCGACGTCTTTGTCCTTTCCATGTGTGTCGACGTTTGGT
ACAAGGGCATGCTGCTCCCCGCCTATGCCTTCTTGACTCAGAACAGGTCT
ATCCTGCTGGCTGCGTTCTTGGCATGTTTCCTCCCTCTTGCCCTCCTCTG
GGTTCCTGCCTTGGTCTTCTTCCCCATTACGCTGCTTATGTTTTGGGGCT
CCTTCCTCCTCTTCCTCTGCCTCACCCCCGTCGGCTGTGCCTTGGTATGG
TTCCTCCTCGCCTCGGAACCTGCTCAGTCCAAGCTCCTGCGCCCCTTCCT
CCAGATATGCCTGAAAACAAAGGGTGTGAGAGGATGGTTTACTCTGCCTT
GCTCTCCGTACAGCCCTTGA
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Synonyms
Publications