NO16G00080.2, NO16G00080.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00080.2
Unique NameNO16G00080.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1854
Alignment locationchr16:27267..30365 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:27267..30365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00080.2 vs.
Match: EWM22827.1 (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 267.7 bits (683), Expect = 6.400e-68
Identity = 118/196 (60.20%), Postives = 147/196 (75.00%), Query Frame = 0 
Query:  240 MDDFDTYSWVMGGETERFRRHSTKRRLVLHAHASCVVTIDVSAPYKACDIQFIGPEATIRPWSERMYTHVGDWDTSKKPRENLEAILGISFPTPPAAATAAKRGGEQGGWQQEYVEECCICYAYRLEDEEGKEGGETPTLPCENERCRRLFHPMCLRQWLQTLPDTKVLGGHMAASHTLVGACPFCSDPISLAVPA 436
            MDD D ++WVMGG +ERFRR S +RR+VLHA ASCV+ ID  APYK   ++F+GPEA I  W+ R+Y  +GDWDT++ PR+NLEAILG  FP PP   T +  GG+  GW+  YVEECCICYAYRL D   KE G+ PT+ CENERCRRL+H +CLRQWLQTLPD K++ G + +  TL+G+CPFC +PISL V A
Sbjct:    1 MDDLDRHAWVMGGASERFRRESRERRVVLHARASCVIKIDPLAPYKPSHVEFVGPEAVIGAWTRRLYAGIGDWDTARMPRQNLEAILGFPFPAPP---THSDGGGKGEGWEAAYVEECCICYAYRLGDGSSKERGDIPTVTCENERCRRLYHSVCLRQWLQTLPDVKMIRGGLTSRTTLLGSCPFCIEPISLEVDA 193
The following BLAST results are available for this feature:
BLAST of NO16G00080.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22827.16.400e-6860.20zinc finger protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00080NO16G00080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00080.2NO16G00080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00080.2.cds1NO16G00080.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00080.2.cds2NO16G00080.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00080.2.cds3NO16G00080.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00080.2.cds4NO16G00080.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00080.2.cds5NO16G00080.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00080.2.cds6NO16G00080.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00080.2.cds7NO16G00080.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00080.2.cds8NO16G00080.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00080.2 ID=NO16G00080.2|Name=NO16G00080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp
AAGACACAGGCAGGGCGATGGCGGCGGCATGAAAGTCGGAGGGGGGAGTA
CAAGGATGGAAGCCCCGCCATCACCACTTATCCCAATGCCAGGAGCCTCG
CCACAGGAGGAGGAGGAAGAGATTTCCTTCTTTCTCGCCTCCCTTGCCAC
TGCAACCACCACCACAAGCTGCAGCAGCAACAGTAGGACTAAGAAGGTGA
CTCTTTCTTTGCTTCCAGCCTCACCGGATTTCATGGCGTTCCAGGGCTTC
GTGTCTCTAGGGCCACATCAGTTGCCACTGGCCTTCTCCTGCGAGACTCC
GGGAGGGCGTGTCTTGATATCGTCCCTTCGAGGGGATGCTCGGCTGCGTG
CGCTGTGGGAGCAGGGCGGATGGTTGAGTCGCACACGGTAAGGGGAAACG
AAGCGTAACGATGAAAGAAATGGCGGCAAATGATTATGAATTAAAGCGGA
CGAAGTACTTGAATGCGCCTACTCATGAGAAGAGGCTCTGAGCTGTTACG
AGATCGAACAGAGGGGAGGAAGGGAAGGCATAGTAAGCAAAGCAGGATCC
CTCACGCCATTCCGTCAAAACACTACAAACGCAGCTTAGAGAGATGCGGC
GATGTGGCCTCTTTTTCCGCCGAGTTAGAAGACATGCTTTCCACCCCCCC
TTCTTCTTTTCGCCCTCCCGCCCTGCCTCGCGCACTCCCTGATGGCCGTC
CGGATGGGAGGGAGACAAAGAGGAGTAGTAGTAGGAGCTGCACGGTACCA
CCTTCTCAATACCGACAGCTGCTTCGCGAGCTGGATGCCTTGGGCTGGGA
CTGCATCCACGATATCTCGCCCTCCCCCTCTTCCCGGGGGCCAGGAGGGG
GGGAGGAAGGGTGGATGACGCTTTCCATCTGTGTGTTGGACGCGGGAGGG
AGGAAGCATGAGATGATGGTAGATCTCCCTCCTCATCAATCCTTCTCTTC
CCCCCCTACCACTTTGCCTCGGTGTCGGGTGGCCTTGCCACCGATTGGGA
AGGAAGGAGGAGGGAAGGGGGGGGAAGGCACAGGCTTGTTGGAGTTCCGG
CCACCACTCTCTTCTACTTCCGCCTCCTCGTCCTCCTCGTCCTCCCCCTC
GTCCTCTTTATTCCATCTCCAAGCGGCCAAGCGGCAGTTTGAGGAGAGCC
TGCGCGCCTGCCAGGACTTCTGGGATGTGATGGATGACTTCGACACCTAT
TCCTGGGTCATGGGCGGCGAAACCGAGCGCTTCCGCCGCCATAGCACCAA
GCGCCGCCTCGTCCTCCACGCTCACGCTTCATGTGTCGTCACCATTGACG
TCAGTGCGCCTTACAAGGCTTGTGACATCCAATTTATCGGCCCCGAGGCC
ACCATTCGGCCCTGGAGCGAGAGGATGTACACGCACGTCGGCGACTGGGA
CACGAGCAAGAAGCCCCGGGAAAATCTAGAGGCGATTCTCGGCATCTCCT
TCCCTACCCCTCCTGCTGCTGCCACTGCTGCGAAGCGGGGGGGGGAGCAG
GGAGGATGGCAGCAGGAGTACGTCGAGGAGTGCTGCATCTGCTACGCTTA
TCGATTGGAGGATGAGGAGGGAAAGGAGGGAGGAGAGACCCCCACGTTGC
CGTGCGAGAACGAGCGCTGCCGCCGCCTCTTCCACCCCATGTGCCTGCGG
CAGTGGCTGCAAACCCTGCCTGACACCAAAGTCTTGGGCGGGCATATGGC
AGCGTCGCACACGCTGGTTGGCGCCTGTCCCTTCTGCAGTGACCCCATTT
CTCTCGCAGTCCCTGCGTCTTCCATGGCATAGGGCGCAGGAGATGGAGGG
CGAGGAGGAGGGCTTTAGGTCCAACATACCCTTCCCCCCTCCCTCCCTCC
CTCC
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protein sequence of NO16G00080.2

>NO16G00080.2-protein ID=NO16G00080.2-protein|Name=NO16G00080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRLLMRRGSELLRDRTEGRKGRHSKQSRIPHAIPSKHYKRSLERCGDVAS
FSAELEDMLSTPPSSFRPPALPRALPDGRPDGRETKRSSSRSCTVPPSQY
RQLLRELDALGWDCIHDISPSPSSRGPGGGEEGWMTLSICVLDAGGRKHE
MMVDLPPHQSFSSPPTTLPRCRVALPPIGKEGGGKGGEGTGLLEFRPPLS
STSASSSSSSSPSSSLFHLQAAKRQFEESLRACQDFWDVMDDFDTYSWVM
GGETERFRRHSTKRRLVLHAHASCVVTIDVSAPYKACDIQFIGPEATIRP
WSERMYTHVGDWDTSKKPRENLEAILGISFPTPPAAATAAKRGGEQGGWQ
QEYVEECCICYAYRLEDEEGKEGGETPTLPCENERCRRLFHPMCLRQWLQ
TLPDTKVLGGHMAASHTLVGACPFCSDPISLAVPASSMA*
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mRNA from alignment at chr16:27267..30365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00080.2 ID=NO16G00080.2|Name=NO16G00080.2|organism=Nannochloropsis oceanica|type=mRNA|length=3099bp|location=Sequence derived from alignment at chr16:27267..30365- (Nannochloropsis oceanica)
AAGACACAGGCAGGGCGATGGCGGCGGCATGAAAGTCGGAGGGGGGAGTA
CAAGGATGGAAGCCCCGCCATCACCACTTATCCCAATGCCAGGAGCCTCG
CCACAGGAGGAGGAGGAAGAGATTTCCTTCTTTCTCGCCTCCCTTGCCAC
TGCAACCACCACCACAAGCTGCAGCAGCAACAGTAGGACTAAGAAGGTGA
CTCTTTCTTTGCTTCCAGCCTCACCGGATTTCATGGCGTTCCAGGGCTTC
GTGTCTCTAGGGGTAAGTACGTCTGAAAAGCTGGGCAGGATGGTGAGAAC
ACACAGGCCAGGAGCCTAGAAAAGGACAGACTCGGTCACACTGAACCAAC
GAGGTAAGTGTGAACTGACCGCGAATTCTTTCCCTATCTGAACACATAGC
CACATCAGTTGCCACTGGCCTTCTCCTGCGAGACTCCGGGAGGGCGTGTC
TTGATATCGTCCCTTCGAGGGGATGCTCGGCTGCGTGCGCTGTGGGAGCA
GGGCGGATGGTTGAGTCGCACACGGTAAGGGGAAACGAAGCGTAACGATG
AAAGAAATGGCGGCAAATGATTATGAATTAAAGCGGACGAAGTACTTGAA
TGCGCCTACTCATGAGAAGAGGCTCTGAGCTGTTACGAGATCGAACAGAG
GGGAGGAAGGGAAGGCATAGTAAGCAAAGCAGGATCCCTCACGCCATTCC
GTCAAAACACTACAAACGCAGCTTAGAGAGATGCGGCGATGTGGCCTCTT
TTTCCGCCGAGTTAGAAGACATGCTTTCCACCCCCCCTTCTTCTTTTCGC
CCTCCCGCCCTGCCTCGCGCACTCCCTGATGGCCGTCCGGATGGGAGGGA
GACAAAGAGGAGTAGTAGTAGGAGCTGCACGGTACCACCTTCTCAATACC
GACAGGTAAGACGGTAAAAAGCGAGTGGAGAGACAGAAACAAAAAACAGG
GGGCGAAAGAAAAGAAGAAGCAACATAAGCGTCTCAATTAAGTGAAATAT
ACTTATCTACTCTCCTTCCTCCCTCCTTCCGTTCCTCCTCCTTCCCTCTC
TCTCTCATGTTTCTCCATCCCCAGCTGCTTCGCGAGCTGGATGCCTTGGG
CTGGGACTGCATCCACGATATCTCGCCCTCCCCCTCTTCCCGGGGGCCAG
GAGGGGGGGAGGAAGGGTGGATGACGCTTTCCATCTGTGTGTTGGACGCG
GGAGGGAGGAAGCATGAGATGATGGTAGATCTCCCTCCTCATCAATCCTT
CTCTTCCCCCCCTACCACTTTGCCTCGGTGTCGGGTGGCCTTGCCACCGA
TTGGGAAGGAAGGAGGAGGGAAGGGGGGGGAAGGCACAGGCTTGTTGGAG
GTAATGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGACTTGGTGT
TGACATGCCCCTCTGCATCATCCTCACGCCCCTGCACTATTCTCTTCCCC
TGTACATTCACAGTTCCGGCCACCACTCTCTTCTACTTCCGCCTCCTCGT
CCTCCTCGTCCTCCCCCTCGTCCTCTTTATTCCATCTCCAAGCGGCCAAG
CGGCAGTTTGAGGAGAGCCTGCGCGCCTGCCAGGACTTCTGGGATGTGAG
GGAGAGGGAGGGAGCGAGGGTGGGATAAGTGGGAAAATGGAAAGGGCTTT
ACTTATTGGGCGCTCGAGCCGTCACACAATCTTTTCCCTCGTGCACACAT
ACCTATTTTCCTCCCTCCCATCCTCCCTCCCTCCCTCCCGTCCTCCCTCC
CTCCCTCCCTCCCTGTCCAAGGTGATGGATGACTTCGACACCTATTCCTG
GGTCATGGGCGGCGAAACCGAGCGCTTCCGCCGCCATAGCACCAAGCGCC
GCCTCGTCCTCCACGCTCACGCTTCATGTGTCGTCACCATTGACGTCAGT
GCGCCTTACAAGGTGCGTCCTCCCTCCCCCCCCTCCCTCCCCCCCTCTAT
CCCATCCTCTAGCTTGCTACATTGCATCCGCCTTCCGCGTTATGTTCATT
CGCCTGTTCATTCTGGCTATCCCTCCCCTCCTCTGTCCCTCTCCCGTTCC
GGCTTTCATGGCTTCACTTTCTTCCAATTTACCCGGATCTCCCTCCTTTT
TCTCCTCCCTCCCGCCCTCCCCCTCCCTCTCTTCTCCCATCCTCTAGGCT
TGTGACATCCAATTTATCGGCCCCGAGGCCACCATTCGGCCCTGGAGCGA
GAGGATGTACACGCACGTCGGCGACTGGTGCGTTTCCTCCCTCCCTCCCT
CCTTCCCTCCCTCCGTCGTTCCCTTCCTCTCCCACAAAATTATTTCCTTC
CCCCTCTTCTCTCCGCCCCTGCCTCCCTTCAGGGACACGAGCAAGAAGCC
CCGGGAAAATCTAGAGGCGATTCTCGGCATCTCCTTCCCTACCCCTCCTG
CTGCTGCCACTGCTGCGAAGCGGGGGGGGGAGCAGGGAGGATGGCAGCAG
GAGTACGTCGAGGAGTGCTGCATCTGCTACGCTTATCGATTGGAGGATGA
GGAGGGAAAGGAGGGAGGAGGTAGGCAGGGGATGAGGGCGGGAGTGAGAA
AGAGGGCGGAGGAGGACTTCTCTTTTGGCTGCTAAAGGCGGATGTATATA
ATATGTGTATATACCGACTTTCCTCCTCCCTTCATTCCCTCCGTCCCTCC
CTCCCTCCCTCTTCCGTTCCCAGAGACCCCCACGTTGCCGTGCGAGAACG
AGCGCTGCCGCCGCCTCTTCCACCCCATGTGCCTGCGGCAGTGGCTGCAA
ACCCTGCCTGACACCAAAGTCTTGGGTAAGGAGGGGAGGGAGATCGTAGA
GGGAGGGAGGGAAGGAGGGAAGGACTGTAAACCAGGGGAAATGCCGCTAA
CAGAAGCAAATGAAGGGAAATGAAACCAACAGAACTCGTCCGTCTCCCCT
CCTCCTCTCCCTCCTCCCCTTCCTCCCCCCAGGCGGGCATATGGCAGCGT
CGCACACGCTGGTTGGCGCCTGTCCCTTCTGCAGTGACCCCATTTCTCTC
GCAGTCCCTGCGTCTTCCATGGCATAGGGCGCAGGAGATGGAGGGCGAGG
AGGAGGGCTTTAGGTCCAACATACCCTTCCCCCCTCCCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at chr16:27267..30365-

>NO16G00080.2 ID=NO16G00080.2|Name=NO16G00080.2|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr16:27267..30365- (Nannochloropsis oceanica)
ATGCGCCTACTCATGAGAAGAGGCTCTGAGCTGTTACGAGATCGAACAGA
GGGGAGGAAGGGAAGGCATAGTAAGCAAAGCAGGATCCCTCACGCCATTC
CGTCAAAACACTACAAACGCAGCTTAGAGAGATGCGGCGATGTGGCCTCT
TTTTCCGCCGAGTTAGAAGACATGCTTTCCACCCCCCCTTCTTCTTTTCG
CCCTCCCGCCCTGCCTCGCGCACTCCCTGATGGCCGTCCGGATGGGAGGG
AGACAAAGAGGAGTAGTAGTAGGAGCTGCACGGTACCACCTTCTCAATAC
CGACAGCTGCTTCGCGAGCTGGATGCCTTGGGCTGGGACTGCATCCACGA
TATCTCGCCCTCCCCCTCTTCCCGGGGGCCAGGAGGGGGGGAGGAAGGGT
GGATGACGCTTTCCATCTGTGTGTTGGACGCGGGAGGGAGGAAGCATGAG
ATGATGGTAGATCTCCCTCCTCATCAATCCTTCTCTTCCCCCCCTACCAC
TTTGCCTCGGTGTCGGGTGGCCTTGCCACCGATTGGGAAGGAAGGAGGAG
GGAAGGGGGGGGAAGGCACAGGCTTGTTGGAGTTCCGGCCACCACTCTCT
TCTACTTCCGCCTCCTCGTCCTCCTCGTCCTCCCCCTCGTCCTCTTTATT
CCATCTCCAAGCGGCCAAGCGGCAGTTTGAGGAGAGCCTGCGCGCCTGCC
AGGACTTCTGGGATGTGATGGATGACTTCGACACCTATTCCTGGGTCATG
GGCGGCGAAACCGAGCGCTTCCGCCGCCATAGCACCAAGCGCCGCCTCGT
CCTCCACGCTCACGCTTCATGTGTCGTCACCATTGACGTCAGTGCGCCTT
ACAAGGCTTGTGACATCCAATTTATCGGCCCCGAGGCCACCATTCGGCCC
TGGAGCGAGAGGATGTACACGCACGTCGGCGACTGGGACACGAGCAAGAA
GCCCCGGGAAAATCTAGAGGCGATTCTCGGCATCTCCTTCCCTACCCCTC
CTGCTGCTGCCACTGCTGCGAAGCGGGGGGGGGAGCAGGGAGGATGGCAG
CAGGAGTACGTCGAGGAGTGCTGCATCTGCTACGCTTATCGATTGGAGGA
TGAGGAGGGAAAGGAGGGAGGAGAGACCCCCACGTTGCCGTGCGAGAACG
AGCGCTGCCGCCGCCTCTTCCACCCCATGTGCCTGCGGCAGTGGCTGCAA
ACCCTGCCTGACACCAAAGTCTTGGGCGGGCATATGGCAGCGTCGCACAC
GCTGGTTGGCGCCTGTCCCTTCTGCAGTGACCCCATTTCTCTCGCAGTCC
CTGCGTCTTCCATGGCATAG
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Synonyms
Publications