NO15G03370.1, NO15G03370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03370.1
Unique NameNO15G03370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1599
Alignment locationchr15:979612..981210 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:979612..981210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03370.1 vs.
Match: EWM22249.1 (harpin binding protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 350.5 bits (898), Expect = 4.300e-93
Identity = 184/246 (74.80%), Postives = 212/246 (86.18%), Query Frame = 0 
Query:    9 VCCLTLSLASSFTLAFVP--STLTSTKSLRISPASTTQRLAASNNWLTNVLSRPSASKKTPAIIAAEAAALKQDLYAVAKNKDNGLKASEADKAQILSLTSELIKLNPTKNIATSNKVDGTWRLIYTSTTGGSAGKLGPFVGEVLQQIDTASGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRLFGLPVVDKKPLNGQAGQWKLSYLDDELRILTAAGLTNEGKPAKVSNIYVLRRV 253
            VCCL L  + + T AFVP    L + +   + P +  + LAA++NW T+VLS+ + SK   A  AA  AALKQDLYAVAKNKDNGLKA+E+DKA+ILSL SELIK NPTKNIATS+KVDGTWRL+YTST+GGSAGKLGPFVG+VLQ+IDTA GDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFR+FG+P+VDKKPL+GQAGQWKL+Y+D++LRILTAA LTNEGKPAKVSNIYVLRRV
Sbjct:    9 VCCL-LGYSLTITTAFVPVRQPLHTHQPKDLQPKAY-KSLAANSNWFTSVLSKNNGSKGKSAADAAAVAALKQDLYAVAKNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRRV 252
The following BLAST results are available for this feature:
BLAST of NO15G03370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22249.14.300e-9374.80harpin binding protein 1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03370NO15G03370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03370.1NO15G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03370.1.cds1NO15G03370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03370.1 ID=NO15G03370.1|Name=NO15G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp
AAGACTATACTCGAACAGAATCAGTTCTATAGTATAATCTCCTCTGTCTG
TACTACACAAGTCTACAGACAACCCTTCCAACTTTGGTGACGAGAAGAGG
TCCTGGCACGGAAACGTGACATACGCCCGGGCGCCCGTGTCGGCCTCCCT
CGGGAGCCGCCGGGGGCCTAGGCAGGAAGACCGTCCCCCTCAAGAGTGCC
CTTCGGGGCCGATGAAGGGTGAGTGACATGGACGGACAGAAAAGTTGGCA
CACCCCCCCCTCAACCCACCACCCGCAAACGACCGAGGGTCAGAGATATA
GTAAAGGGAAAACAACAAGTAAGTTGTGCATTTCAAGCACGTCCCTCATG
ACACTCAAACTCGGCCCTCTCGACCCCTAAATTGGCTGCCCCAGGACGAC
AATATCTGCACCCACGCACTAGAGCAAGCACAGGCTGCATCCAAACACAC
CTTCTCTCCTCGCGGTGCAGGGCCTTGCTCTTCTTTTACCTCGATTCCCC
TAGTCCGCAACCCCTAGTCGAAGCCCGAGTGACTCATTTTTTTCCTCTGC
ACGTCAACAGTGTCCTTACCCACATACAAACCTACACAGCCTCTGCTTGG
CCAGGACCATGAAGCTCACCTCTACCTTAACCGTCTGTTGCCTTACTTTA
TCTCTTGCTTCCTCCTTCACCCTGGCTTTTGTGCCCTCCACGCTGACGAG
CACCAAGAGCCTCCGCATCAGCCCTGCCTCGACGACGCAACGCCTTGCAG
CTAGCAACAACTGGCTCACCAACGTCCTGTCCAGGCCCTCCGCATCCAAG
AAGACTCCAGCCATCATAGCTGCCGAGGCTGCGGCGCTTAAGCAAGACCT
GTACGCCGTAGCCAAGAACAAGGACAATGGCCTCAAGGCCTCCGAAGCCG
ATAAGGCCCAAATTCTCTCTCTTACCTCGGAGCTTATCAAACTGAATCCC
ACGAAGAACATCGCCACCAGCAATAAGGTAGACGGGACCTGGCGCCTGAT
TTACACCAGCACCACGGGCGGCAGTGCGGGGAAGCTTGGACCGTTTGTGG
GCGAGGTGCTGCAACAAATCGACACGGCTAGCGGCGACTACGTGAATTTT
GTACGTCTTTTCGGCGGTCTTGTGGAGGGGGCCTTAGTCGCCACTTGGGA
AGTGAAGGGCGCAAATGAGTGGAAGGTGATTTTTCAGGACATTACCTTTC
GTTTGTTTGGATTGCCGGTGGTGGATAAGAAACCTCTGAATGGGCAGGCG
GGCCAGTGGAAGTTGAGCTACTTGGACGATGAATTGCGAATTTTGACGGC
AGCCGGCTTGACTAATGAAGGAAAACCGGCCAAGGTTTCCAATATTTATG
TATTGCGGCGGGTGTAAAAGAAGCGATACAGAGTGTGAGTGGGGTGTGAA
GGTAGCTCATTTTTTTTGTTTGGGCATGAGCGGAAAATCAAAGAGGGACG
TGTGGATACTCTTATTAATTAGTGACCATCACGGGGCCTGTATCATAGTG
GAGAGAAATGAAATGCCAAGAGAAGAAATGACGGTGAGGACTAGAAAATA
CGTTGTTGCTTGTGTAAAGCAGGAGGCGGCTCGAGAAGCCACCTAAATT
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protein sequence of NO15G03370.1

>NO15G03370.1-protein ID=NO15G03370.1-protein|Name=NO15G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MKLTSTLTVCCLTLSLASSFTLAFVPSTLTSTKSLRISPASTTQRLAASN
NWLTNVLSRPSASKKTPAIIAAEAAALKQDLYAVAKNKDNGLKASEADKA
QILSLTSELIKLNPTKNIATSNKVDGTWRLIYTSTTGGSAGKLGPFVGEV
LQQIDTASGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRLF
GLPVVDKKPLNGQAGQWKLSYLDDELRILTAAGLTNEGKPAKVSNIYVLR
RV*
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mRNA from alignment at chr15:979612..981210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03370.1 ID=NO15G03370.1|Name=NO15G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at chr15:979612..981210- (Nannochloropsis oceanica)
AAGACTATACTCGAACAGAATCAGTTCTATAGTATAATCTCCTCTGTCTG
TACTACACAAGTCTACAGACAACCCTTCCAACTTTGGTGACGAGAAGAGG
TCCTGGCACGGAAACGTGACATACGCCCGGGCGCCCGTGTCGGCCTCCCT
CGGGAGCCGCCGGGGGCCTAGGCAGGAAGACCGTCCCCCTCAAGAGTGCC
CTTCGGGGCCGATGAAGGGTGAGTGACATGGACGGACAGAAAAGTTGGCA
CACCCCCCCCTCAACCCACCACCCGCAAACGACCGAGGGTCAGAGATATA
GTAAAGGGAAAACAACAAGTAAGTTGTGCATTTCAAGCACGTCCCTCATG
ACACTCAAACTCGGCCCTCTCGACCCCTAAATTGGCTGCCCCAGGACGAC
AATATCTGCACCCACGCACTAGAGCAAGCACAGGCTGCATCCAAACACAC
CTTCTCTCCTCGCGGTGCAGGGCCTTGCTCTTCTTTTACCTCGATTCCCC
TAGTCCGCAACCCCTAGTCGAAGCCCGAGTGACTCATTTTTTTCCTCTGC
ACGTCAACAGTGTCCTTACCCACATACAAACCTACACAGCCTCTGCTTGG
CCAGGACCATGAAGCTCACCTCTACCTTAACCGTCTGTTGCCTTACTTTA
TCTCTTGCTTCCTCCTTCACCCTGGCTTTTGTGCCCTCCACGCTGACGAG
CACCAAGAGCCTCCGCATCAGCCCTGCCTCGACGACGCAACGCCTTGCAG
CTAGCAACAACTGGCTCACCAACGTCCTGTCCAGGCCCTCCGCATCCAAG
AAGACTCCAGCCATCATAGCTGCCGAGGCTGCGGCGCTTAAGCAAGACCT
GTACGCCGTAGCCAAGAACAAGGACAATGGCCTCAAGGCCTCCGAAGCCG
ATAAGGCCCAAATTCTCTCTCTTACCTCGGAGCTTATCAAACTGAATCCC
ACGAAGAACATCGCCACCAGCAATAAGGTAGACGGGACCTGGCGCCTGAT
TTACACCAGCACCACGGGCGGCAGTGCGGGGAAGCTTGGACCGTTTGTGG
GCGAGGTGCTGCAACAAATCGACACGGCTAGCGGCGACTACGTGAATTTT
GTACGTCTTTTCGGCGGTCTTGTGGAGGGGGCCTTAGTCGCCACTTGGGA
AGTGAAGGGCGCAAATGAGTGGAAGGTGATTTTTCAGGACATTACCTTTC
GTTTGTTTGGATTGCCGGTGGTGGATAAGAAACCTCTGAATGGGCAGGCG
GGCCAGTGGAAGTTGAGCTACTTGGACGATGAATTGCGAATTTTGACGGC
AGCCGGCTTGACTAATGAAGGAAAACCGGCCAAGGTTTCCAATATTTATG
TATTGCGGCGGGTGTAAAAGAAGCGATACAGAGTGTGAGTGGGGTGTGAA
GGTAGCTCATTTTTTTTGTTTGGGCATGAGCGGAAAATCAAAGAGGGACG
TGTGGATACTCTTATTAATTAGTGACCATCACGGGGCCTGTATCATAGTG
GAGAGAAATGAAATGCCAAGAGAAGAAATGACGGTGAGGACTAGAAAATA
CGTTGTTGCTTGTGTAAAGCAGGAGGCGGCTCGAGAAGCCACCTAAATT
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Coding sequence (CDS) from alignment at chr15:979612..981210-

>NO15G03370.1 ID=NO15G03370.1|Name=NO15G03370.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr15:979612..981210- (Nannochloropsis oceanica)
ATGAAGCTCACCTCTACCTTAACCGTCTGTTGCCTTACTTTATCTCTTGC
TTCCTCCTTCACCCTGGCTTTTGTGCCCTCCACGCTGACGAGCACCAAGA
GCCTCCGCATCAGCCCTGCCTCGACGACGCAACGCCTTGCAGCTAGCAAC
AACTGGCTCACCAACGTCCTGTCCAGGCCCTCCGCATCCAAGAAGACTCC
AGCCATCATAGCTGCCGAGGCTGCGGCGCTTAAGCAAGACCTGTACGCCG
TAGCCAAGAACAAGGACAATGGCCTCAAGGCCTCCGAAGCCGATAAGGCC
CAAATTCTCTCTCTTACCTCGGAGCTTATCAAACTGAATCCCACGAAGAA
CATCGCCACCAGCAATAAGGTAGACGGGACCTGGCGCCTGATTTACACCA
GCACCACGGGCGGCAGTGCGGGGAAGCTTGGACCGTTTGTGGGCGAGGTG
CTGCAACAAATCGACACGGCTAGCGGCGACTACGTGAATTTTGTACGTCT
TTTCGGCGGTCTTGTGGAGGGGGCCTTAGTCGCCACTTGGGAAGTGAAGG
GCGCAAATGAGTGGAAGGTGATTTTTCAGGACATTACCTTTCGTTTGTTT
GGATTGCCGGTGGTGGATAAGAAACCTCTGAATGGGCAGGCGGGCCAGTG
GAAGTTGAGCTACTTGGACGATGAATTGCGAATTTTGACGGCAGCCGGCT
TGACTAATGAAGGAAAACCGGCCAAGGTTTCCAATATTTATGTATTGCGG
CGGGTGTAA
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Synonyms
Publications