NO15G03300.1, NO15G03300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03300.1
Unique NameNO15G03300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr15:963862..965458 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:963862..965458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03300.1 vs.
Match: EWM22261.1 (6-pyruvoyl tetrahydropterin synthase [Nannochloropsis gaditana])

HSP 1 Score: 295.0 bits (754), Expect = 2.400e-76
Identity = 148/196 (75.51%), Postives = 164/196 (83.67%), Query Frame = 0 
Query:   86 MKQDFKFHCAHFVAFKGYRERLHGHNYTVGVRMRGAGRGHDGYLIDFGDIKRVTRSLCKELNERFICPTRSDVIQIESDETSTSLLCEDGARFVFPTGDCAMLPVVHSTAEELAQYLWHRLTTTFSLEGLLARGIHTLQIIVAEAPRQEGSYTRKLTSPPPLCFEEDKERGR---VSRPRPCIHAVE-EDGKDIDG 278
            MK+DFKFHCAHFVAFKGYRERLHGHNYTVGVRMRG  RGHDGYLIDFGDIK VTR+LCKELNERF+CPTRSDVIQI+ +    SL CEDGA FV PT DCAMLPVVHSTAEELAQY WHRLTT+FS++ LL+RGIHTLQI+VAEAPRQEG YTR+LTS PPL F ++   GR   V +P+PCI   E  DG+  DG
Sbjct:    1 MKEDFKFHCAHFVAFKGYRERLHGHNYTVGVRMRGTRRGHDGYLIDFGDIKLVTRALCKELNERFLCPTRSDVIQIDVEGPRISLACEDGALFVLPTADCAMLPVVHSTAEELAQYFWHRLTTSFSVDRLLSRGIHTLQIMVAEAPRQEGCYTRRLTS-PPLSFLDEGLGGRAAEVLKPKPCIGRNEVGDGQGGDG 195
The following BLAST results are available for this feature:
BLAST of NO15G03300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22261.12.400e-7675.516-pyruvoyl tetrahydropterin synthase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03300NO15G03300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03300.1NO15G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03300.1.cds1NO15G03300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03300.1.cds2NO15G03300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03300.1.cds3NO15G03300.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03300.1.cds4NO15G03300.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03300.1 ID=NO15G03300.1|Name=NO15G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
GGATTACTTGTCTTGTCTGCCTGTGGACGTAGGAATTGAATCAGAATATT
AGAGTGAATCGACCAAAATAACACGACAAGGGAGGATGGACCAGAACACT
GTGAAATCTAAAGCCAAGGAGCGAAGCGATGAGGGCAGCGGGGAGGTCAA
AGTCGGCCACGCATGCACATTTAGTGCCTTTTACGCATGCCTTCACACAC
AACCACATATCATGCAGGCCATAGAAAGCGCATCTACGGTAGCCATGACA
TCATCCTCGTCATCCACGCCTGCCGCGAATAGCAGCGCAGCCAGTCCAGC
AAACGAGGAGGAGTCGCAAGAGGAATACGAGGTCTTCGTCATGAAGCAAG
ACTTCAAGTTCCACTGTGCGCATTTCGTAGCATTCAAGGGTTATAGAGAA
AGATTGCACGGCCATAATTACACCGTGGGCGTGCGGATGCGCGGGGCTGG
GCGAGGGCACGATGGCTATCTCATTGACTTCGGTGACATCAAGCGCGTAA
CCCGCTCCCTCTGTAAGGAGCTCAACGAACGCTTTATCTGCCCGACCCGG
AGCGACGTGATTCAAATCGAGAGTGACGAGACCTCGACTTCACTTCTGTG
TGAGGACGGGGCTAGGTTTGTCTTTCCAACGGGCGATTGCGCCATGCTCC
CGGTAGTGCACAGCACCGCCGAGGAGCTCGCGCAGTACCTGTGGCATCGC
CTGACCACCACCTTTAGCTTGGAGGGGTTGCTGGCCCGGGGCATCCATAC
TTTGCAGATCATCGTCGCCGAGGCCCCTCGGCAAGAAGGCTCCTACACGC
GGAAGCTGACCTCGCCCCCACCGTTGTGCTTCGAGGAGGATAAGGAGAGA
GGGCGGGTGTCGAGACCGAGGCCGTGTATACACGCAGTCGAAGAGGATGG
AAAGGATATAGATGGGGAGGACTTGGACATGTAGGTAAGAAAATAAAGAG
ACGAAGAGAAAAATACCTGTCTAGGGATGACTAAAATGATTACGACAAAA
TGATGTGAAATGAATAAATATACTTA
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protein sequence of NO15G03300.1

>NO15G03300.1-protein ID=NO15G03300.1-protein|Name=NO15G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MDQNTVKSKAKERSDEGSGEVKVGHACTFSAFYACLHTQPHIMQAIESAS
TVAMTSSSSSTPAANSSAASPANEEESQEEYEVFVMKQDFKFHCAHFVAF
KGYRERLHGHNYTVGVRMRGAGRGHDGYLIDFGDIKRVTRSLCKELNERF
ICPTRSDVIQIESDETSTSLLCEDGARFVFPTGDCAMLPVVHSTAEELAQ
YLWHRLTTTFSLEGLLARGIHTLQIIVAEAPRQEGSYTRKLTSPPPLCFE
EDKERGRVSRPRPCIHAVEEDGKDIDGEDLDM*
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mRNA from alignment at chr15:963862..965458+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03300.1 ID=NO15G03300.1|Name=NO15G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at chr15:963862..965458+ (Nannochloropsis oceanica)
GGATTACTTGTCTTGTCTGCCTGTGGACGTAGGAATTGAATCAGAATATT
AGAGTGAATCGACCAAAATAACACGACAAGGGAGGATGGACCAGAACACT
GTGAAATCTAAAGCCAAGGAGCGAAGCGATGAGGGCAGCGGGGAGGTCAA
AGTCGGCCACGCATGCACATTTAGTGCCTTTTACGCATGCCTTCACACAC
AACCACATATCATGCAGGCCATAGAAAGCGCATCTACGGTAGCCATGACA
TCATCCTCGTCATCCACGCCTGCCGCGAATAGCAGCGCAGCCAGTCCAGC
AAACGAGGAGGAGTCGCAAGAGGAATACGAGGTAACAATCACACTCGCCT
CCCCTACCTGACCCTTTGATCCAAAGCCATCCTTACTGTGCCTGCTGCAT
TGACACTTCAGTGACGCCTTCGAAGTTCTCCATCGTAACTGGTTCCCCTC
TCCTCCTTGTCTGTGTTTTGGTCCTGTCTCTCATTCCCTCCCTCCTCTCT
TCCCCTCCCTCCCCTGCTCACCACACTCCCACCCAAAGGTCTTCGTCATG
AAGCAAGACTTCAAGTTCCACTGTGCGCATTTCGTAGCATTCAAGGGTTA
TAGAGAAAGATTGCACGGCCATAATTACACCGTGGGCGTGCGGATGCGCG
GGGCTGGGCGAGGGCACGATGGGTAAGGTGGTTGTGGGGATGGGGTGGCG
AGCAGACAAGAGTAAGGAGAGTAAGGAGATACGCGCACCAACATGCCAAG
TGGCGGTAAGGACTACCTGTTTGTAGAAACGCCTCAATTGCTTTTCGTCC
TCTCTCGCGCTCCCCTCCCCCGGACTCAACCTCCTTCCCTCCCTACCTCC
CTCCCTTCCTTCCTCCTTTCCTTCCCCCACCCAAAGCTATCTCATTGACT
TCGGTGACATCAAGCGCGTAACCCGCTCCCTCTGTAAGGAGCTCAACGAA
CGCTTTATCTGCCCGACCCGGAGCGACGTGATTCAAATCGAGAGTGACGA
GACCTCGACTTCACTTCTGTGTGAGGACGGGGCTAGGTTTGTCTTTCCAA
CGGGCGATTGCGCCATGCTCCCGGTAGTGCACAGGTGAGCGAAGAGGACA
AAGGGAGGAGTACGTCCTGGCACCACCCTGAAATTAGAAAAATTTAAATT
AAATGGAATATGGAGGATATAACATTTTCACATCGGCTATCCATCGATAT
GCCCTCTCATTCCCGCGGCTACCCCCACCCACAGCACCGCCGAGGAGCTC
GCGCAGTACCTGTGGCATCGCCTGACCACCACCTTTAGCTTGGAGGGGTT
GCTGGCCCGGGGCATCCATACTTTGCAGATCATCGTCGCCGAGGCCCCTC
GGCAAGAAGGCTCCTACACGCGGAAGCTGACCTCGCCCCCACCGTTGTGC
TTCGAGGAGGATAAGGAGAGAGGGCGGGTGTCGAGACCGAGGCCGTGTAT
ACACGCAGTCGAAGAGGATGGAAAGGATATAGATGGGGAGGACTTGGACA
TGTAGGTAAGAAAATAAAGAGACGAAGAGAAAAATACCTGTCTAGGGATG
ACTAAAATGATTACGACAAAATGATGTGAAATGAATAAATATACTTA
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Coding sequence (CDS) from alignment at chr15:963862..965458+

>NO15G03300.1 ID=NO15G03300.1|Name=NO15G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr15:963862..965458+ (Nannochloropsis oceanica)
ATGGACCAGAACACTGTGAAATCTAAAGCCAAGGAGCGAAGCGATGAGGG
CAGCGGGGAGGTCAAAGTCGGCCACGCATGCACATTTAGTGCCTTTTACG
CATGCCTTCACACACAACCACATATCATGCAGGCCATAGAAAGCGCATCT
ACGGTAGCCATGACATCATCCTCGTCATCCACGCCTGCCGCGAATAGCAG
CGCAGCCAGTCCAGCAAACGAGGAGGAGTCGCAAGAGGAATACGAGGTCT
TCGTCATGAAGCAAGACTTCAAGTTCCACTGTGCGCATTTCGTAGCATTC
AAGGGTTATAGAGAAAGATTGCACGGCCATAATTACACCGTGGGCGTGCG
GATGCGCGGGGCTGGGCGAGGGCACGATGGCTATCTCATTGACTTCGGTG
ACATCAAGCGCGTAACCCGCTCCCTCTGTAAGGAGCTCAACGAACGCTTT
ATCTGCCCGACCCGGAGCGACGTGATTCAAATCGAGAGTGACGAGACCTC
GACTTCACTTCTGTGTGAGGACGGGGCTAGGTTTGTCTTTCCAACGGGCG
ATTGCGCCATGCTCCCGGTAGTGCACAGCACCGCCGAGGAGCTCGCGCAG
TACCTGTGGCATCGCCTGACCACCACCTTTAGCTTGGAGGGGTTGCTGGC
CCGGGGCATCCATACTTTGCAGATCATCGTCGCCGAGGCCCCTCGGCAAG
AAGGCTCCTACACGCGGAAGCTGACCTCGCCCCCACCGTTGTGCTTCGAG
GAGGATAAGGAGAGAGGGCGGGTGTCGAGACCGAGGCCGTGTATACACGC
AGTCGAAGAGGATGGAAAGGATATAGATGGGGAGGACTTGGACATGTAG
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Synonyms
Publications