NO15G02940.1, NO15G02940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02940.1
Unique NameNO15G02940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2914
Alignment locationchr15:799967..803163 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:799967..803163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02940.1 vs.
Match: EWM22308.1 (protein of unknown function DUF1990 [Nannochloropsis gaditana])

HSP 1 Score: 563.1 bits (1450), Expect = 7.100e-157
Identity = 267/387 (68.99%), Postives = 315/387 (81.40%), Query Frame = 0 
Query:   28 LSMITVAALLLASLVPMARAGAITYANNGEQTMKAHFSDFYEIMQPEDYIIYQDRLQEIIDWGLRNTLTHDPRKGLWQGIAEDWPLVPSPVRRGIKTRHKNFGPVTDKRQQLLDEKANRFRERIERGLAKKGFLVAYFMYNHDGNAMGGAEGRRMSLMSMASRLPRIRVGWPHSYKQVQHYLIALRQRKFNHMYVGVTQEFLPYGGRVVEDWLRHKGYEGFRVKTRRVLLGKGPEIYATAKKNMVNWSWNEKVRWSQFLEGEHGINVVSRIRAYGLFWTMNPLRKVLCHEKAWGKQGGAVAAVAVSTLQGHLLEGEERFCVCWEGGKQGDVWFDMLSFSKGGFPLGKLLMPLIRPLQDRFFADLGNAMQSAVREAVALREKEAEEAK 415
            L  +T  ALL A L      GA+TYAN+GE  ++AHFSDFYEIM PEDY IYQDRL EIIDWGLRNT   D RKG  QG+AEDW  VP+P+R+G+K RHK+FGP+ ++R+  LDE+  + R+RI+RG+AKKG+LVAY+M+NHD NAMG AE R  SL      LPR+R+GWPHS +QVQHYL+ALRQRKFNHMYVGVTQEF PYG R VEDWLR KGYEGF+VKT+RVLLGKGPE YA AK  +VNWSW E+V+W +F EGEHGINVVS+IR YGL WTMNPLRKVLCHEK WGK+GGAVAAVAVSTL+GHLLEGEERFCV +EGG+QGDVWFD+LSFSKG FPLG+LLMP++RPLQ+RF  D+G AMQ  V E+V  +   A ++K
Sbjct:    6 LHALTTVALLFALLARGTEGGAVTYANHGEPALQAHFSDFYEIMTPEDYRIYQDRLHEIIDWGLRNTRQQDLRKGFLQGVAEDWRFVPTPLRQGLKRRHKDFGPLQERRRVTLDERNRQMRDRIDRGVAKKGYLVAYYMFNHDCNAMGPAEDREHSLFFQP--LPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGESVPEKSVVANKSK 390
The following BLAST results are available for this feature:
BLAST of NO15G02940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22308.17.100e-15768.99protein of unknown function DUF1990 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02940NO15G02940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02940.1NO15G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02940.1.cds1NO15G02940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02940.1.cds2NO15G02940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02940.1.cds3NO15G02940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02940.1 ID=NO15G02940.1|Name=NO15G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2914bp
TGTGTGTTCACATTGCTTTTTTGGATTTTTTTCGTACCCTCCAACTGAAG
AGAAAGAGAGGATTTGAGTGAAACGGTCTGTGATCCATGCGGCTATCTCC
CGCCCTGCCGTCTTGCACACGCCTTTGAATACCTTCCATCATGGTCTCAC
ACGTCTCCCACCTCGTGGGAACCACGTTCCGACCCCTACATATCGCCTTC
CTCCTTCCCTCTCCTTCCTCCTCGACCTATCCATCCCTTTCTCCCCTCCT
CCTCTTCCTCATCTCCCTCCCTTTCCTCCCTTGCCGGCTTTGGTCCATTT
ATATGACCCATGTCCTGATTCCAAAACCCGTCATGTACCCCTCTCATCCC
CTCCACCTCATACGGTCCCTCCACCTTCATCTCCAGCGTTCCACGTTCAA
AAACCTCACGACACGGCAAGTCAAATGTTGCCCCTTTAGCAATTTCCTTG
AGCTCATATTCAGGTAGTGCGTACACTAGCCTCGGAATGCCGCTCCAATA
GATCGCTCCGGCACACATCGGGCAGGGCTCGGCGGATACGTAGAGAGTGC
AGTGACGCAGAAACGCCTCGGTGTAACTTTGACAGGCCATCCTTACCACG
TTCATCTCCGAGTGGCACGTGGCATCGCCAGAGGTAACCACGCTGTTTCC
GCCTGCAATTACCGTTTGCTTGCTGTCATTATTCACAAGAACACAACCAA
AAGGATGATCGCCCTTGGCGCGTGCCCTCCGGGCATTTTCAATAGTCTCT
TCGAGGTACTTGTGGTGGTGTTTTGGGCATGAAGAAATTGCTGCACGCTT
GTACTCTCGCTGCACGTGCTTCTTGAATTGTGATGATAGAGAGATAGAGA
CATCGGTAGAAGGCTTGCGCTTCTTCTCTTGTTTTATTGCTTGCTTCATG
AATACTGGTGATACAGGGGAAGAGGGCGAGGGTGTACTCTGCGGAGGAGG
GAGGGGGGAGGTTGAAAACCCCTGTTTTTTCCCACATGTGGAGAGAAAGT
CAATTACGATTAACCCGAAGACAAGAAACCATCATGAGCAAATCTTTTCT
CTCGTTTTCCTTCTCCTTATGATGCTGCTGCTGCTGAGATTTCGGGGTGG
TTGTGTCAAGCGTTCTTTGACGAAAGGCGAACGCGAAGCTTCAACTTAGA
AACCCGTTCCTGTCCACTCCATCTGATGCTTCCGCTTACGACACACACTC
ATTCACGCTAACCGCACATGTAAAGTCAGAGAGCTCCTGCTGCGAGAGCG
CTTGCTGCTAATTCCTGCCACCTCCACAGCGAGTCTTTTCCTTTTGTCCC
AGAAACGCAACAACCTCACCACTCGTCAGCGAGCGAGAAAAGGGGGGCAA
CGGCACATCACCATGGCGTCCAAAGCAGCAACAGCAGCAACAGCAAAATC
AGCCGCGGCAGTACTGTCTCGACGATGTATCCCCTTGCTTGTACTTTCCA
TGATTACGGTGGCGGCATTGCTACTGGCGTCGTTGGTGCCGATGGCGAGA
GCCGGTGCCATTACATACGCTAACAATGGAGAGCAGACGATGAAGGCGCA
CTTTAGTGACTTCTACGAGATCATGCAGCCGGAAGATTACATAATCTATC
AGGACCGCCTCCAAGAAATCATTGACTGGGGCCTTCGAAACACGCTCACC
CACGACCCACGCAAAGGCCTGTGGCAAGGCATTGCCGAAGACTGGCCCCT
CGTCCCATCCCCTGTCCGGCGAGGCATTAAAACCCGCCATAAGAATTTCG
GGCCCGTTACTGATAAACGGCAACAGTTGTTGGATGAGAAGGCGAATAGA
TTCAGGGAGAGGATTGAGAGGGGGTTGGCCAAAAAAGGCTTTTTGGTTGC
ATATTTCATGTACAACCATGATGGTAATGCCATGGGAGGGGCGGAGGGGA
GGAGAATGTCATTGATGTCGATGGCGTCACGCCTGCCGCGGATCCGGGTA
GGATGGCCTCATTCTTACAAGCAGGTCCAGCATTACTTGATAGCATTAAG
GCAGAGAAAGTTTAATCACATGTACGTGGGGGTGACGCAGGAGTTCTTGC
CGTATGGGGGCCGGGTGGTGGAGGACTGGTTGCGGCATAAGGGCTATGAA
GGCTTTAGGGTGAAGACGAGGAGGGTGCTCTTGGGCAAGGGTCCGGAGAT
TTACGCCACCGCCAAGAAGAATATGGTGAACTGGTCATGGAATGAGAAGG
TGCGGTGGTCACAGTTCCTGGAGGGGGAACATGGGATTAACGTCGTGAGC
AGGATCCGGGCGTATGGGTTGTTTTGGACGATGAACCCCTTGAGGAAGGT
GTTGTGCCATGAAAAGGCTTGGGGGAAGCAGGGCGGGGCTGTGGCGGCCG
TCGCGGTCAGTACGCTGCAGGGGCATTTACTGGAGGGGGAGGAGAGGTTT
TGTGTGTGTTGGGAAGGGGGGAAGCAAGGGGACGTGTGGTTTGACATGCT
GAGTTTTAGTAAGGGGGGCTTTCCCTTGGGGAAGTTGTTGATGCCGTTGA
TCCGGCCGTTACAGGACCGTTTCTTTGCCGACTTGGGCAATGCCATGCAG
AGTGCTGTAAGAGAAGCAGTGGCCCTGAGGGAAAAGGAAGCGGAAGAGGC
GAAGCTGGCCCGGAAATGGCGCAAGTGATGAAGGAAGGAGGGAGGGAGGG
AAGGAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGAGGGAGAGATTTCA
GGAGATAACTGTTGATAACGGACCACTCATATGTGTAGCTACGATCCGAG
CAAGGCCTCTACTGAGGACAGGTACATGCCCATCAAGACGAAGAAGATTC
AGCAGGAGTGATGGCAGAATTAAATATAAACCCTATGAAGAAGGATTAGA
GAGTGGCTGCACGATTCATCGTGAATAACATGAGGATACCCGGAGAGAGA
TGGCGACAACCTCT
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protein sequence of NO15G02940.1

>NO15G02940.1-protein ID=NO15G02940.1-protein|Name=NO15G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MASKAATAATAKSAAAVLSRRCIPLLVLSMITVAALLLASLVPMARAGAI
TYANNGEQTMKAHFSDFYEIMQPEDYIIYQDRLQEIIDWGLRNTLTHDPR
KGLWQGIAEDWPLVPSPVRRGIKTRHKNFGPVTDKRQQLLDEKANRFRER
IERGLAKKGFLVAYFMYNHDGNAMGGAEGRRMSLMSMASRLPRIRVGWPH
SYKQVQHYLIALRQRKFNHMYVGVTQEFLPYGGRVVEDWLRHKGYEGFRV
KTRRVLLGKGPEIYATAKKNMVNWSWNEKVRWSQFLEGEHGINVVSRIRA
YGLFWTMNPLRKVLCHEKAWGKQGGAVAAVAVSTLQGHLLEGEERFCVCW
EGGKQGDVWFDMLSFSKGGFPLGKLLMPLIRPLQDRFFADLGNAMQSAVR
EAVALREKEAEEAKLARKWRK*
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mRNA from alignment at chr15:799967..803163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02940.1 ID=NO15G02940.1|Name=NO15G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=3197bp|location=Sequence derived from alignment at chr15:799967..803163+ (Nannochloropsis oceanica)
TGTGTGTTCACATTGCTTTTTTGGATTTTTTTCGTACCCTCCAACTGAAG
AGAAAGAGAGGATTTGAGTGAAACGGTCTGTGATCCATGCGGCTATCTCC
CGCCCTGCCGTCTTGCACACGCCTTTGAATACCTTCCATCATGGTCTCAC
ACGTCTCCCACCTCGTGGGAACCACGTTCCGACCCCTACATATCGCCTTC
CTCCTTCCCTCTCCTTCCTCCTCGACCTATCCATCCCTTTCTCCCCTCCT
CCTCTTCCTCATCTCCCTCCCTTTCCTCCCTTGCCGGCTTTGGTCCATTT
ATATGACCCATGTCCTGATTCCAAAACCCGTCATGTACCCCTCTCATCCC
CTCCACCTCATACGGTCCCTCCACCTTCATCTCCAGCGTTCCACGTTCAA
AAACCTCACGACACGGCAAGTCAAATGTTGCCCCTTTAGCAATTTCCTTG
AGCTCATATTCAGGTAGTGCGTACACTAGCCTCGGAATGCCGCTCCAATA
GATCGCTCCGGCACACATCGGGCAGGGCTCGGCGGATACGTAGAGAGTGC
AGTGACGCAGAAACGCCTCGGTGTAACTTTGACAGGCCATCCTTACCACG
TTCATCTCCGAGTGGCACGTGGCATCGCCAGAGGTAACCACGCTGTTTCC
GCCTGCAATTACCGTTTGCTTGCTGTCATTATTCACAAGAACACAACCAA
AAGGATGATCGCCCTTGGCGCGTGCCCTCCGGGCATTTTCAATAGTCTCT
TCGAGGTACTTGTGGTGGTGTTTTGGGCATGAAGAAATTGCTGCACGCTT
GTACTCTCGCTGCACGTGCTTCTTGAATTGTGATGATAGAGAGATAGAGA
CATCGGTAGAAGGCTTGCGCTTCTTCTCTTGTTTTATTGCTTGCTTCATG
AATACTGGTGATACAGGGGAAGAGGGCGAGGGTGTACTCTGCGGAGGAGG
GAGGGGGGAGGTTGAAAACCCCTGTTTTTTCCCACATGTGGAGAGAAAGT
CAATTACGATTAACCCGAAGACAAGAAACCATCATGAGCAAATCTTTTCT
CTCGTTTTCCTTCTCCTTATGATGCTGCTGCTGCTGAGATTTCGGGGTGG
TTGTGTCAAGCGTTCTTTGACGAAAGGCGAACGCGAAGCTTCAACTTAGA
AACCCGTTCCTGTCCACTCCATCTGATGCTTCCGCTTACGACACACACTC
ATTCACGCTAACCGCACATGTAAAGTCAGAGAGCTCCTGCTGCGAGAGCG
CTTGCTGCTAATTCCTGCCACCTCCACAGCGAGTCTTTTCCTTTTGTCCC
AGAAACGCAACAACCTCACCACTCGTCAGCGAGCGAGAAAAGGGGGGCAA
CGGCACATCACCATGGCGTCCAAAGCAGCAACAGCAGCAACAGCAAAATC
AGCCGCGGCAGTACTGTCTCGACGATGTATCCCCTTGCTTGTACTTTCCA
TGATTACGGTGGCGGCATTGCTACTGGCGTCGTTGGTGCCGATGGCGAGA
GGTAAGACAAGACATCCATCACCATCCTCTTTCCTTCTGTCACACAGCCC
CTTGCTCACGTCCCTTGCTCTCCTTTCATCATCCCATTTTCGAAGCCGGT
GCCATTACATACGCTAACAATGGAGAGCAGACGATGAAGGCGCACTTTAG
TGACTTCTACGAGATCATGCAGCCGGAAGATTACATGTAAGGAGGGAGGG
AGGGAAGGCAAGGAAGGGTGAAAAAGAAGCAGTAAAAGATGGGAAATAGG
GCAGCATAGAGCTCTTTCACAAGTGTCCTTCTGTGTACAAATATCCCTTC
TCATCAAACCTTTCTCCGTTCTCTCCCCCATCCTCCCTCTCCTCCTTCCC
TTTTCTCCTCTTTCCACGCATTCAGAATCTATCAGGACCGCCTCCAAGAA
ATCATTGACTGGGGCCTTCGAAACACGCTCACCCACGACCCACGCAAAGG
CCTGTGGCAAGGCATTGCCGAAGACTGGCCCCTCGTCCCATCCCCTGTCC
GGCGAGGCATTAAAACCCGCCATAAGAATTTCGGGCCCGTTACTGATAAA
CGGCAACAGTTGTTGGATGAGAAGGCGAATAGATTCAGGGAGAGGATTGA
GAGGGGGTTGGCCAAAAAAGGCTTTTTGGTTGCATATTTCATGTACAACC
ATGATGGTAATGCCATGGGAGGGGCGGAGGGGAGGAGAATGTCATTGATG
TCGATGGCGTCACGCCTGCCGCGGATCCGGGTAGGATGGCCTCATTCTTA
CAAGCAGGTCCAGCATTACTTGATAGCATTAAGGCAGAGAAAGTTTAATC
ACATGTACGTGGGGGTGACGCAGGAGTTCTTGCCGTATGGGGGCCGGGTG
GTGGAGGACTGGTTGCGGCATAAGGGCTATGAAGGCTTTAGGGTGAAGAC
GAGGAGGGTGCTCTTGGGCAAGGGTCCGGAGATTTACGCCACCGCCAAGA
AGAATATGGTGAACTGGTCATGGAATGAGAAGGTGCGGTGGTCACAGTTC
CTGGAGGGGGAACATGGGATTAACGTCGTGAGCAGGATCCGGGCGTATGG
GTTGTTTTGGACGATGAACCCCTTGAGGAAGGTGTTGTGCCATGAAAAGG
CTTGGGGGAAGCAGGGCGGGGCTGTGGCGGCCGTCGCGGTCAGTACGCTG
CAGGGGCATTTACTGGAGGGGGAGGAGAGGTTTTGTGTGTGTTGGGAAGG
GGGGAAGCAAGGGGACGTGTGGTTTGACATGCTGAGTTTTAGTAAGGGGG
GCTTTCCCTTGGGGAAGTTGTTGATGCCGTTGATCCGGCCGTTACAGGAC
CGTTTCTTTGCCGACTTGGGCAATGCCATGCAGAGTGCTGTAAGAGAAGC
AGTGGCCCTGAGGGAAAAGGAAGCGGAAGAGGCGAAGCTGGCCCGGAAAT
GGCGCAAGTGATGAAGGAAGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGA
AGGAGGGAGAGAGGGAGGGAGGGAGAGATTTCAGGAGATAACTGTTGATA
ACGGACCACTCATATGTGTAGCTACGATCCGAGCAAGGCCTCTACTGAGG
ACAGGTACATGCCCATCAAGACGAAGAAGATTCAGCAGGAGTGATGGCAG
AATTAAATATAAACCCTATGAAGAAGGATTAGAGAGTGGCTGCACGATTC
ATCGTGAATAACATGAGGATACCCGGAGAGAGATGGCGACAACCTCT
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Coding sequence (CDS) from alignment at chr15:799967..803163+

>NO15G02940.1 ID=NO15G02940.1|Name=NO15G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr15:799967..803163+ (Nannochloropsis oceanica)
ATGGCGTCCAAAGCAGCAACAGCAGCAACAGCAAAATCAGCCGCGGCAGT
ACTGTCTCGACGATGTATCCCCTTGCTTGTACTTTCCATGATTACGGTGG
CGGCATTGCTACTGGCGTCGTTGGTGCCGATGGCGAGAGCCGGTGCCATT
ACATACGCTAACAATGGAGAGCAGACGATGAAGGCGCACTTTAGTGACTT
CTACGAGATCATGCAGCCGGAAGATTACATAATCTATCAGGACCGCCTCC
AAGAAATCATTGACTGGGGCCTTCGAAACACGCTCACCCACGACCCACGC
AAAGGCCTGTGGCAAGGCATTGCCGAAGACTGGCCCCTCGTCCCATCCCC
TGTCCGGCGAGGCATTAAAACCCGCCATAAGAATTTCGGGCCCGTTACTG
ATAAACGGCAACAGTTGTTGGATGAGAAGGCGAATAGATTCAGGGAGAGG
ATTGAGAGGGGGTTGGCCAAAAAAGGCTTTTTGGTTGCATATTTCATGTA
CAACCATGATGGTAATGCCATGGGAGGGGCGGAGGGGAGGAGAATGTCAT
TGATGTCGATGGCGTCACGCCTGCCGCGGATCCGGGTAGGATGGCCTCAT
TCTTACAAGCAGGTCCAGCATTACTTGATAGCATTAAGGCAGAGAAAGTT
TAATCACATGTACGTGGGGGTGACGCAGGAGTTCTTGCCGTATGGGGGCC
GGGTGGTGGAGGACTGGTTGCGGCATAAGGGCTATGAAGGCTTTAGGGTG
AAGACGAGGAGGGTGCTCTTGGGCAAGGGTCCGGAGATTTACGCCACCGC
CAAGAAGAATATGGTGAACTGGTCATGGAATGAGAAGGTGCGGTGGTCAC
AGTTCCTGGAGGGGGAACATGGGATTAACGTCGTGAGCAGGATCCGGGCG
TATGGGTTGTTTTGGACGATGAACCCCTTGAGGAAGGTGTTGTGCCATGA
AAAGGCTTGGGGGAAGCAGGGCGGGGCTGTGGCGGCCGTCGCGGTCAGTA
CGCTGCAGGGGCATTTACTGGAGGGGGAGGAGAGGTTTTGTGTGTGTTGG
GAAGGGGGGAAGCAAGGGGACGTGTGGTTTGACATGCTGAGTTTTAGTAA
GGGGGGCTTTCCCTTGGGGAAGTTGTTGATGCCGTTGATCCGGCCGTTAC
AGGACCGTTTCTTTGCCGACTTGGGCAATGCCATGCAGAGTGCTGTAAGA
GAAGCAGTGGCCCTGAGGGAAAAGGAAGCGGAAGAGGCGAAGCTGGCCCG
GAAATGGCGCAAGTGA
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Synonyms
Publications