NO15G02870.1, NO15G02870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02870.1
Unique NameNO15G02870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length744
Alignment locationchr15:783420..784494 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:783420..784494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02870.1 vs.
Match: EWM22317.1 (bacterioferritin comigratory protein [Nannochloropsis gaditana])

HSP 1 Score: 357.8 bits (917), Expect = 2.600e-95
Identity = 196/256 (76.56%), Postives = 212/256 (82.81%), Query Frame = 0 
Query:    3 LSLSSSLSSSSTLLALLLVAAMACLSHGYVRPLHMSQQQSHQSHQR---STPSTS--------LGMDRRDLLSKGIVGGAAAAFASTFTLTTAPPKVRADVPAEGIEAPDFTLPSSLGKSLSLADLVKTKKYTVLYFFPQVFTSSCTLEAKAFQRDIDSYNKLNAQIVGVSVDESTKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPEGKLVKVFTNVESKVKRHSEEVLEALKALQA 248
            + LSS  +  +T L L ++    CLSH Y+RPLHMSQ Q  QS  +   S+PSTS         G+DRR+LL+KG +GGAAAAF  TFTLTT   K  ADVPAEGIEAPDF+LPSSLGK LSLADL K  KYTVLYFFPQVFTSSCTLEAKAFQRDID+Y KLNAQIVGVSVDES KQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISP+GKLVKVFTNVESKVK+HSEEVLEALKALQA
Sbjct:   36 MKLSSMFTLPATSLLLTVLVGAPCLSHAYIRPLHMSQSQPQQSMSQPAASSPSTSSATSPTFLAGIDRRNLLTKGFLGGAAAAFTGTFTLTTGAQKAGADVPAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQA 291
The following BLAST results are available for this feature:
BLAST of NO15G02870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22317.12.600e-9576.56bacterioferritin comigratory protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02870NO15G02870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02870.1NO15G02870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02870.1.cds1NO15G02870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02870.1.cds2NO15G02870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02870.1.cds3NO15G02870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02870.1 ID=NO15G02870.1|Name=NO15G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=744bp
ATGCAGCTGTCGTTGTCGTCATCCCTATCCTCCTCCTCCACTCTCCTAGC
CCTCCTCCTCGTGGCCGCCATGGCCTGCCTCTCCCACGGCTATGTCCGCC
CCCTGCACATGTCCCAACAGCAGTCACATCAGTCGCATCAACGCAGCACG
CCTTCCACCTCATTGGGCATGGACCGCCGTGATCTTTTGAGCAAGGGTAT
TGTGGGCGGGGCGGCCGCTGCATTCGCCAGTACCTTCACCCTGACCACCG
CCCCGCCAAAGGTCCGCGCTGACGTGCCCGCCGAGGGGATCGAAGCCCCC
GATTTCACCCTGCCCTCGAGCTTGGGCAAGTCCTTGTCTCTGGCAGACCT
GGTCAAGACCAAGAAATACACGGTGCTGTATTTCTTCCCTCAGGTCTTCA
CGAGCTCATGCACGTTAGAGGCCAAGGCATTCCAGCGAGACATAGATAGT
TACAACAAGCTAAATGCACAGATTGTGGGGGTGTCGGTCGATGAATCGAC
TAAGCAAACGGACTTCAAGTCCGAGTGTGGGTTAGACTTTATTTTGCTGA
GCGATAAGGGTGCTAAGGTCTCGGAGGCCTATGGCTCAGCTTTAGACATT
CCGTTTCTCGGCCGTTTTTCCAACCGGCAAACCTACATCATCTCCCCGGA
GGGCAAGTTGGTGAAAGTCTTCACTAACGTTGAGTCCAAGGTGAAGCGGC
ATTCGGAGGAGGTCCTGGAGGCGCTCAAGGCACTTCAGGCGTAG
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protein sequence of NO15G02870.1

>NO15G02870.1-protein ID=NO15G02870.1-protein|Name=NO15G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MQLSLSSSLSSSSTLLALLLVAAMACLSHGYVRPLHMSQQQSHQSHQRST
PSTSLGMDRRDLLSKGIVGGAAAAFASTFTLTTAPPKVRADVPAEGIEAP
DFTLPSSLGKSLSLADLVKTKKYTVLYFFPQVFTSSCTLEAKAFQRDIDS
YNKLNAQIVGVSVDESTKQTDFKSECGLDFILLSDKGAKVSEAYGSALDI
PFLGRFSNRQTYIISPEGKLVKVFTNVESKVKRHSEEVLEALKALQA*
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mRNA from alignment at chr15:783420..784494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02870.1 ID=NO15G02870.1|Name=NO15G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp|location=Sequence derived from alignment at chr15:783420..784494- (Nannochloropsis oceanica)
ATGCAGCTGTCGTTGTCGTCATCCCTATCCTCCTCCTCCACTCTCCTAGC
CCTCCTCCTCGTGGCCGCCATGGCCTGCCTCTCCCACGGCTATGTCCGCC
CCCTGCACATGTCCCAACAGCAGTCACATCAGTCGCATCAACGCAGCACG
CCTTCCACCTCATTGGGCATGGACCGCCGTGATCTTTTGAGCAAGGGTAT
TGTGGGCGGGGCGGCCGCTGCATTCGCCAGTACCTTCACCCTGACCACCG
CCCCGCCAAAGGTCCGCGCTGACGTGCCCGCCGAGGGGATCGAAGCCCCC
GATTTCACCCTGCCCTCGAGCTTGGGCAAGTCCTTGTCTCTGGCAGACCT
GGTCAAGACCAAGAAATACACGGTGCTGTATTTCTTCCCTCAGGTCTTCA
CGAGCTCATGCACGTTAGAGGCCAAGGCATTCCAGCGAGACATAGATAGT
TACAACAAGCTAAATGCACAGATTGTGGGGGTGTCGGTCGATGAATCGAC
TAAGCAAACGGACTTCAAGTCCGAGTGTGGGTTAGACTTTATTTGTACGT
TATTTCGAGAACAGGGATGGTTTGGGAGTAATGGGAGGATGGGAAAACAG
GGAGTTTGGGACGGATGGAGGAGAAAGGGATGGCGATAGATGGTAGTTGA
CCGGGAAGGAAGGATAGATATGCTGAATCTTCTTCCATTCCTATCAATAT
GTAAACACAGTGCTGAGCGATAAGGGTGCTAAGGTCTCGGAGGCCTATGG
CTCAGCTTTAGACATTCCGTTTCTCGGCCGTTTTTCCAACCGGCAAACCT
ACATCATCTCCCCGGTACGTGTTTGTCTCTTTTGAATTTCCTACCTCGTC
TCGAAACAAGGATGGATAAGCATTCATGCCTCGACGGGGAATGACACTCT
GCTGGCGTTCACTTGCAACCTTCTCTCACCGCCCGCCCTCCCTCCCTCCC
TCCCTTCCTGACTCCTCCCTTCCTTACAGGAGGGCAAGTTGGTGAAAGTC
TTCACTAACGTTGAGTCCAAGGTGAAGCGGCATTCGGAGGAGGTCCTGGA
GGCGCTCAAGGCACTTCAGGCGTAG
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Coding sequence (CDS) from alignment at chr15:783420..784494-

>NO15G02870.1 ID=NO15G02870.1|Name=NO15G02870.1|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr15:783420..784494- (Nannochloropsis oceanica)
ATGCAGCTGTCGTTGTCGTCATCCCTATCCTCCTCCTCCACTCTCCTAGC
CCTCCTCCTCGTGGCCGCCATGGCCTGCCTCTCCCACGGCTATGTCCGCC
CCCTGCACATGTCCCAACAGCAGTCACATCAGTCGCATCAACGCAGCACG
CCTTCCACCTCATTGGGCATGGACCGCCGTGATCTTTTGAGCAAGGGTAT
TGTGGGCGGGGCGGCCGCTGCATTCGCCAGTACCTTCACCCTGACCACCG
CCCCGCCAAAGGTCCGCGCTGACGTGCCCGCCGAGGGGATCGAAGCCCCC
GATTTCACCCTGCCCTCGAGCTTGGGCAAGTCCTTGTCTCTGGCAGACCT
GGTCAAGACCAAGAAATACACGGTGCTGTATTTCTTCCCTCAGGTCTTCA
CGAGCTCATGCACGTTAGAGGCCAAGGCATTCCAGCGAGACATAGATAGT
TACAACAAGCTAAATGCACAGATTGTGGGGGTGTCGGTCGATGAATCGAC
TAAGCAAACGGACTTCAAGTCCGAGTGTGGGTTAGACTTTATTTTGCTGA
GCGATAAGGGTGCTAAGGTCTCGGAGGCCTATGGCTCAGCTTTAGACATT
CCGTTTCTCGGCCGTTTTTCCAACCGGCAAACCTACATCATCTCCCCGGA
GGGCAAGTTGGTGAAAGTCTTCACTAACGTTGAGTCCAAGGTGAAGCGGC
ATTCGGAGGAGGTCCTGGAGGCGCTCAAGGCACTTCAGGCGTAG
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Synonyms
Publications