NO15G02720.1, NO15G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02720.1
Unique NameNO15G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1749
Alignment locationchr15:741380..743128 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:741380..743128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02720.1 vs.
Match: OUW35132.1 (hypothetical protein CBD35_06770 [Verrucomicrobia bacterium TMED175])

HSP 1 Score: 82.8 bits (203), Expect = 3.900e-12
Identity = 88/335 (26.27%), Postives = 133/335 (39.70%), Query Frame = 0 
Query:  243 ETNSDNNIIGQKRPASVTHVSAGPEHALFVLSNGAVYGVGANPDGRLGLGPQQLHQEEGGEHVRNNNYHRKNFFSSPIAMKPLPQGKRVLSAACGGTHSLLLDEDGGAWSCGADAWYQLAQGETWKVTKDRPEAVFWEPKKIRAFEDVIVGAIAAGENHSLFSVVVEEGGYWLEKGNFGKAAKTPARVVEMWASGFGQYGQLGDRAYVHLSVAKQIKDLRLLTFPEVKLPVPVLGCGSNHSAAVVVEPS-VKANSRGGPPSRDVELKYKPQVYVWGHNLGGQCGTGKAGNIAKPVQLAVEVEEGRKQGRMVEGVVCGYDYTGFVVRVDEGGEERG 577
            +T   N+ + +   + VTH++ G  H+LF+ S G ++ +G N  G+L            G+   NN+       SSP+ ++       V +   G  HSL LDE+G  W+ G + + QL  G     T++   +    P KIR   D  V AIAAG NHSL+   ++E G                    +WA G   YGQLGD                              G  +  S+ V VE S V     GG  S    +K    V+  G N  GQ G     N  +P+++         +   +E V  G+++  F   ++E G   G
Sbjct:   85 KTTDINSTVNEIVTSGVTHIATGENHSLFIKSGGVLFTMGLNSSGQL------------GDETENNS-------SSPVKIR----DANVSTVTAGANHSLYLDENGSLWAFGDNTYGQLGDG-----TENNSSS----PVKIR---DANVSAIAAGANHSLY---LDENG-------------------SLWAFGDNTYGQLGD------------------------------GSETESSSPVQVEASGVDKVFAGGNAS--FYIKTDGSVWAMGDNEYGQLGDSTNWNRNRPIRIF-------SKSAKIETVATGFNHNFF---LNENGTVEG 320
The following BLAST results are available for this feature:
BLAST of NO15G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OUW35132.13.900e-1226.27hypothetical protein CBD35_06770 [Verrucomicrobia ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02720NO15G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02720.1NO15G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02720.1.cds1NO15G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02720.1 ID=NO15G02720.1|Name=NO15G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
ATGTCCGCTTCGACCCTCTTATTAAGGCGCTCGTGGGCCCGAACTGCTGC
GTGTATGACGAATTCGTCCACTTTTCCACGGCGCGCCTGGTCTTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTACTCCTCCTCCTCCAGCACCCCGGCT
GCCGTTACAGCCGCTGCCACGGCTATCGCTTCTCTGCTCTACCTGGCCTC
TTCTGAGCCCAAGAGTTTTCACAGTAATTCGTCTTCCGCCTCATTCTGCG
CCCCTTCCAAAAGCACGCCCCAAACCCTTTACGTGACAGGTTCAGAGAGC
GGGCGAGGTTTCAAGGAGACCGTGGTTGGAGTGCCCAAAGAAGTCGTTTT
TCCTGGCCCACCCAGCCCGATTGACAGTGTGAGCTTCGGTCCTGCTTGGG
CAGCGGTAGCCAAGAATGGAAACGTTTATCTGTGCTCGGGCTTGGGGGAG
GGAGGTCCGACCGGAGGAGCGATGGTGATCACCAGTACGTTGCATGAGGC
GAAGGGTGGATGGTTTGGAGCGGCACAGGCAGTGATGCAGGTGGCATGTA
GCCGAGATAAAATCTATGGACGGACGAGCAAAGGAGAGATATTATATTGG
ACACGCGTGCCATCAGCGGCAAACGAGGAAAAAGGTGCAGGGCAGTCAGC
AGCAGCAGTAACAGCAGCAGGAGCTGCAGCGTCGTCTCAACCACGTTTTA
AAGGCCCGTACAAATACAGCACTTGGGAAACCAACAGCGACAACAACATT
ATCGGACAAAAACGCCCTGCATCCGTTACACACGTGAGTGCCGGGCCAGA
GCATGCACTCTTCGTTCTGAGCAACGGTGCGGTCTATGGGGTGGGGGCAA
ACCCCGACGGCCGGCTCGGACTCGGGCCACAACAACTACATCAAGAAGAA
GGCGGAGAACATGTCAGGAACAACAATTACCACCGCAAGAATTTCTTTTC
CTCCCCTATTGCCATGAAGCCCCTTCCGCAGGGGAAGAGAGTCCTCAGCG
CGGCCTGTGGAGGGACGCACTCTCTCCTGCTGGATGAGGATGGGGGGGCG
TGGTCCTGCGGGGCCGACGCGTGGTACCAACTCGCACAGGGGGAGACATG
GAAAGTGACGAAAGATCGCCCCGAAGCTGTTTTTTGGGAGCCCAAGAAAA
TCCGGGCGTTTGAAGATGTGATTGTGGGCGCCATTGCCGCAGGAGAGAAC
CATTCCCTCTTTTCTGTCGTCGTGGAGGAGGGTGGTTACTGGCTCGAAAA
GGGCAATTTTGGAAAGGCTGCCAAGACACCTGCGAGGGTTGTGGAGATGT
GGGCGTCGGGTTTTGGTCAGTACGGGCAGCTAGGAGACAGGGCTTACGTG
CACTTGTCGGTGGCAAAGCAGATTAAGGATCTGCGGTTGTTGACATTCCC
CGAAGTGAAGTTGCCCGTGCCGGTGTTGGGGTGTGGGAGCAACCACAGTG
CGGCGGTTGTGGTGGAGCCGAGCGTGAAGGCCAACAGTCGCGGAGGCCCA
CCCTCGAGAGACGTTGAATTAAAATACAAACCACAGGTGTACGTGTGGGG
TCACAATTTGGGGGGCCAATGCGGGACGGGGAAGGCCGGTAATATCGCCA
AGCCAGTGCAGCTTGCGGTGGAAGTGGAGGAGGGACGGAAACAGGGAAGG
ATGGTAGAGGGGGTGGTGTGTGGCTATGATTACACGGGCTTTGTGGTGAG
GGTGGATGAGGGAGGGGAGGAGAGGGGAGGTAAGGGGGGCAGCAAATGA
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protein sequence of NO15G02720.1

>NO15G02720.1-protein ID=NO15G02720.1-protein|Name=NO15G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MSASTLLLRRSWARTAACMTNSSTFPRRAWSSSSSSSSSSSYSSSSSTPA
AVTAAATAIASLLYLASSEPKSFHSNSSSASFCAPSKSTPQTLYVTGSES
GRGFKETVVGVPKEVVFPGPPSPIDSVSFGPAWAAVAKNGNVYLCSGLGE
GGPTGGAMVITSTLHEAKGGWFGAAQAVMQVACSRDKIYGRTSKGEILYW
TRVPSAANEEKGAGQSAAAVTAAGAAASSQPRFKGPYKYSTWETNSDNNI
IGQKRPASVTHVSAGPEHALFVLSNGAVYGVGANPDGRLGLGPQQLHQEE
GGEHVRNNNYHRKNFFSSPIAMKPLPQGKRVLSAACGGTHSLLLDEDGGA
WSCGADAWYQLAQGETWKVTKDRPEAVFWEPKKIRAFEDVIVGAIAAGEN
HSLFSVVVEEGGYWLEKGNFGKAAKTPARVVEMWASGFGQYGQLGDRAYV
HLSVAKQIKDLRLLTFPEVKLPVPVLGCGSNHSAAVVVEPSVKANSRGGP
PSRDVELKYKPQVYVWGHNLGGQCGTGKAGNIAKPVQLAVEVEEGRKQGR
MVEGVVCGYDYTGFVVRVDEGGEERGGKGGSK*
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mRNA from alignment at chr15:741380..743128+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02720.1 ID=NO15G02720.1|Name=NO15G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at chr15:741380..743128+ (Nannochloropsis oceanica)
ATGTCCGCTTCGACCCTCTTATTAAGGCGCTCGTGGGCCCGAACTGCTGC
GTGTATGACGAATTCGTCCACTTTTCCACGGCGCGCCTGGTCTTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTACTCCTCCTCCTCCAGCACCCCGGCT
GCCGTTACAGCCGCTGCCACGGCTATCGCTTCTCTGCTCTACCTGGCCTC
TTCTGAGCCCAAGAGTTTTCACAGTAATTCGTCTTCCGCCTCATTCTGCG
CCCCTTCCAAAAGCACGCCCCAAACCCTTTACGTGACAGGTTCAGAGAGC
GGGCGAGGTTTCAAGGAGACCGTGGTTGGAGTGCCCAAAGAAGTCGTTTT
TCCTGGCCCACCCAGCCCGATTGACAGTGTGAGCTTCGGTCCTGCTTGGG
CAGCGGTAGCCAAGAATGGAAACGTTTATCTGTGCTCGGGCTTGGGGGAG
GGAGGTCCGACCGGAGGAGCGATGGTGATCACCAGTACGTTGCATGAGGC
GAAGGGTGGATGGTTTGGAGCGGCACAGGCAGTGATGCAGGTGGCATGTA
GCCGAGATAAAATCTATGGACGGACGAGCAAAGGAGAGATATTATATTGG
ACACGCGTGCCATCAGCGGCAAACGAGGAAAAAGGTGCAGGGCAGTCAGC
AGCAGCAGTAACAGCAGCAGGAGCTGCAGCGTCGTCTCAACCACGTTTTA
AAGGCCCGTACAAATACAGCACTTGGGAAACCAACAGCGACAACAACATT
ATCGGACAAAAACGCCCTGCATCCGTTACACACGTGAGTGCCGGGCCAGA
GCATGCACTCTTCGTTCTGAGCAACGGTGCGGTCTATGGGGTGGGGGCAA
ACCCCGACGGCCGGCTCGGACTCGGGCCACAACAACTACATCAAGAAGAA
GGCGGAGAACATGTCAGGAACAACAATTACCACCGCAAGAATTTCTTTTC
CTCCCCTATTGCCATGAAGCCCCTTCCGCAGGGGAAGAGAGTCCTCAGCG
CGGCCTGTGGAGGGACGCACTCTCTCCTGCTGGATGAGGATGGGGGGGCG
TGGTCCTGCGGGGCCGACGCGTGGTACCAACTCGCACAGGGGGAGACATG
GAAAGTGACGAAAGATCGCCCCGAAGCTGTTTTTTGGGAGCCCAAGAAAA
TCCGGGCGTTTGAAGATGTGATTGTGGGCGCCATTGCCGCAGGAGAGAAC
CATTCCCTCTTTTCTGTCGTCGTGGAGGAGGGTGGTTACTGGCTCGAAAA
GGGCAATTTTGGAAAGGCTGCCAAGACACCTGCGAGGGTTGTGGAGATGT
GGGCGTCGGGTTTTGGTCAGTACGGGCAGCTAGGAGACAGGGCTTACGTG
CACTTGTCGGTGGCAAAGCAGATTAAGGATCTGCGGTTGTTGACATTCCC
CGAAGTGAAGTTGCCCGTGCCGGTGTTGGGGTGTGGGAGCAACCACAGTG
CGGCGGTTGTGGTGGAGCCGAGCGTGAAGGCCAACAGTCGCGGAGGCCCA
CCCTCGAGAGACGTTGAATTAAAATACAAACCACAGGTGTACGTGTGGGG
TCACAATTTGGGGGGCCAATGCGGGACGGGGAAGGCCGGTAATATCGCCA
AGCCAGTGCAGCTTGCGGTGGAAGTGGAGGAGGGACGGAAACAGGGAAGG
ATGGTAGAGGGGGTGGTGTGTGGCTATGATTACACGGGCTTTGTGGTGAG
GGTGGATGAGGGAGGGGAGGAGAGGGGAGGTAAGGGGGGCAGCAAATGA
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Coding sequence (CDS) from alignment at chr15:741380..743128+

>NO15G02720.1 ID=NO15G02720.1|Name=NO15G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr15:741380..743128+ (Nannochloropsis oceanica)
ATGTCCGCTTCGACCCTCTTATTAAGGCGCTCGTGGGCCCGAACTGCTGC
GTGTATGACGAATTCGTCCACTTTTCCACGGCGCGCCTGGTCTTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTACTCCTCCTCCTCCAGCACCCCGGCT
GCCGTTACAGCCGCTGCCACGGCTATCGCTTCTCTGCTCTACCTGGCCTC
TTCTGAGCCCAAGAGTTTTCACAGTAATTCGTCTTCCGCCTCATTCTGCG
CCCCTTCCAAAAGCACGCCCCAAACCCTTTACGTGACAGGTTCAGAGAGC
GGGCGAGGTTTCAAGGAGACCGTGGTTGGAGTGCCCAAAGAAGTCGTTTT
TCCTGGCCCACCCAGCCCGATTGACAGTGTGAGCTTCGGTCCTGCTTGGG
CAGCGGTAGCCAAGAATGGAAACGTTTATCTGTGCTCGGGCTTGGGGGAG
GGAGGTCCGACCGGAGGAGCGATGGTGATCACCAGTACGTTGCATGAGGC
GAAGGGTGGATGGTTTGGAGCGGCACAGGCAGTGATGCAGGTGGCATGTA
GCCGAGATAAAATCTATGGACGGACGAGCAAAGGAGAGATATTATATTGG
ACACGCGTGCCATCAGCGGCAAACGAGGAAAAAGGTGCAGGGCAGTCAGC
AGCAGCAGTAACAGCAGCAGGAGCTGCAGCGTCGTCTCAACCACGTTTTA
AAGGCCCGTACAAATACAGCACTTGGGAAACCAACAGCGACAACAACATT
ATCGGACAAAAACGCCCTGCATCCGTTACACACGTGAGTGCCGGGCCAGA
GCATGCACTCTTCGTTCTGAGCAACGGTGCGGTCTATGGGGTGGGGGCAA
ACCCCGACGGCCGGCTCGGACTCGGGCCACAACAACTACATCAAGAAGAA
GGCGGAGAACATGTCAGGAACAACAATTACCACCGCAAGAATTTCTTTTC
CTCCCCTATTGCCATGAAGCCCCTTCCGCAGGGGAAGAGAGTCCTCAGCG
CGGCCTGTGGAGGGACGCACTCTCTCCTGCTGGATGAGGATGGGGGGGCG
TGGTCCTGCGGGGCCGACGCGTGGTACCAACTCGCACAGGGGGAGACATG
GAAAGTGACGAAAGATCGCCCCGAAGCTGTTTTTTGGGAGCCCAAGAAAA
TCCGGGCGTTTGAAGATGTGATTGTGGGCGCCATTGCCGCAGGAGAGAAC
CATTCCCTCTTTTCTGTCGTCGTGGAGGAGGGTGGTTACTGGCTCGAAAA
GGGCAATTTTGGAAAGGCTGCCAAGACACCTGCGAGGGTTGTGGAGATGT
GGGCGTCGGGTTTTGGTCAGTACGGGCAGCTAGGAGACAGGGCTTACGTG
CACTTGTCGGTGGCAAAGCAGATTAAGGATCTGCGGTTGTTGACATTCCC
CGAAGTGAAGTTGCCCGTGCCGGTGTTGGGGTGTGGGAGCAACCACAGTG
CGGCGGTTGTGGTGGAGCCGAGCGTGAAGGCCAACAGTCGCGGAGGCCCA
CCCTCGAGAGACGTTGAATTAAAATACAAACCACAGGTGTACGTGTGGGG
TCACAATTTGGGGGGCCAATGCGGGACGGGGAAGGCCGGTAATATCGCCA
AGCCAGTGCAGCTTGCGGTGGAAGTGGAGGAGGGACGGAAACAGGGAAGG
ATGGTAGAGGGGGTGGTGTGTGGCTATGATTACACGGGCTTTGTGGTGAG
GGTGGATGAGGGAGGGGAGGAGAGGGGAGGTAAGGGGGGCAGCAAATGA
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Synonyms
Publications