NO15G02630.1, NO15G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02630.1
Unique NameNO15G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1665
Alignment locationchr15:717559..719410 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:717559..719410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02630.1 vs.
Match: EWM22335.1 (metalloprotease family [Nannochloropsis gaditana])

HSP 1 Score: 328.6 bits (841), Expect = 1.900e-86
Identity = 182/249 (73.09%), Postives = 203/249 (81.53%), Query Frame = 0 
Query:    1 MDCLKCKASLKSVMARPRPKALLDALAETGIQTLENAPESRRAAIAASTQRHFQGGGGGGRGQQDGGEKSETKISGNYG--TGGAA--GVGGAGATLNIKCLNCAEEGIAMKARAYMEAPPMSVVLCANRLQDRREMEEALVHELVHVYDHALVKMDLTNCAELAYSEIRAAREAECHYTSQLCSWFKKQCVKSTATRSTATLFPEEGAKCVMGVFEAAFKDMGPEQLHAGLTTGGGAGGDKGGGARGG 246
            MDCLKCKASLK++MARPRPKALLDALA+TGIQTLEN PESRRAAIAASTQRH     G G+  ++GG        G++G    G A  G GG G+TLNIKC+NCAEEG+AMKARAYMEAPPMSVVLCANRLQDRREMEEALVHELVHVYDHALV+MDLT C +LAYSE+RAAREAECHYT QLCSWFKKQCV+STATRSTAT+FP EGA CV  VFE A++D+GP++LH  L  G G  G  GG   GG
Sbjct:   28 MDCLKCKASLKAIMARPRPKALLDALADTGIQTLENVPESRRAAIAASTQRH----QGTGQPDREGGILRGNTGPGDHGGRERGLAEQGGGGGGSTLNIKCINCAEEGLAMKARAYMEAPPMSVVLCANRLQDRREMEEALVHELVHVYDHALVQMDLTTCKDLAYSEVRAAREAECHYTPQLCSWFKKQCVQSTATRSTATIFPTEGAACVAAVFEKAYRDVGPKKLHGDLAIGAGESG--GGRLLGG 270
The following BLAST results are available for this feature:
BLAST of NO15G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22335.11.900e-8673.09metalloprotease family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02630NO15G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02630.1NO15G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02630.1.cds1NO15G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02630.1.cds2NO15G02630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02630.1 ID=NO15G02630.1|Name=NO15G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
CTTGTGCTTGACCACGTTCACAAGATTTGCTCTATCTTGTCTGTTTTATT
TTCAGTGTACCCTCAGGGAGGAATATAAATGCTGCAGCCGAAGCAGGCCG
AGTCTGCCAAATCTTAGTGTTGCGTTTGACTTGTGAAAAGGCAGGCAACC
CTCCCAAGTGTGGCTGTCTGGCCCATGCTGAAGGCACAAAGAGCAGCAGG
CTGCGGCGACGCGCAACTCTTCTCTCTGCTGCCATATTGATACGTTCATC
CCCGTCTGTCAAGACCGGCACCCTGAACAGTCATACAGCTTGCTTCCAAG
CAGAAGTGCATGCTTTTGTGTGTTTGTGTGCATTGCGTGGCAGGGGAAGA
TGCAGACTTAGATGAGCCCTACCATGTATGACCCCCGAAGCCATGCCATC
CGCACCATCACCAACACGTGACGCACGCCCGCTGCTCATTCCCCAACCCG
CACCACTGCCACATCCACAGTCTTGGCTGCACCAACAGCACCTGAATCTC
CAGTAGCAAGCCCACCACGTGCTGCTTCTGCCGGCGTGGTGTGGCCTTTT
TGTGACTGCTTCAATCCAAGGAGCAATCCCTGTGGGCTCTGATAAGTCGC
CCTTCCCCTCCGCACCCTTGCTCTCCACAATCACCGGCGCCCAGACAGCC
CGATGGACTGTCTGAAGTGCAAGGCCTCTCTCAAGTCCGTCATGGCACGG
CCCCGCCCCAAGGCGCTACTGGATGCGCTGGCCGAGACGGGCATCCAAAC
CTTAGAAAATGCGCCCGAGTCCCGTCGTGCCGCGATAGCCGCCTCGACTC
AAAGACACTTCCAGGGAGGAGGAGGAGGAGGAAGAGGACAACAAGACGGA
GGGGAAAAGAGTGAAACAAAAATAAGTGGAAATTATGGTACGGGGGGCGC
AGCAGGAGTAGGAGGAGCAGGGGCGACTTTAAATATAAAGTGCCTTAACT
GTGCAGAGGAAGGGATTGCGATGAAAGCACGGGCATACATGGAGGCGCCG
CCAATGTCGGTGGTGTTGTGTGCGAATCGTTTGCAAGATCGTCGGGAGAT
GGAGGAGGCACTGGTCCATGAGTTGGTGCATGTTTATGATCACGCCCTTG
TCAAGATGGACCTCACCAATTGCGCCGAGCTTGCCTACAGTGAGATCCGA
GCCGCTCGCGAGGCCGAATGCCATTACACCTCTCAGCTGTGTTCGTGGTT
CAAGAAGCAGTGCGTGAAGAGCACGGCGACCCGGAGCACAGCCACCTTGT
TCCCCGAGGAGGGTGCGAAGTGTGTGATGGGAGTATTTGAGGCTGCCTTT
AAGGACATGGGTCCTGAACAATTGCATGCCGGGTTGACCACAGGAGGGGG
GGCTGGAGGGGATAAAGGAGGTGGTGCACGAGGAGGGCGGGAAGGAAGAA
GGGAGGGAAGAGGAGGAGAAGGGGGGGGGAAAGGGAGGGAGGTAAGGCCC
CGATTGGACGTACTCCGACGGCGGCATCGATGAGAGTTTTGATAGATAAT
CTACAGACAACTGGCCCTCCCTCCGCCCCTTCCTCCTCCTCTTTCTCCGC
GTTTTCGGGGGTATCAGGAATGGGGCTGGCGGAGACTTTGGCCACGGCTT
TTGGGATTCGATGACCAATATATGCGATGGAGATAGAAGGGGGGAGAGGG
GAGATCACTCACACA
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protein sequence of NO15G02630.1

>NO15G02630.1-protein ID=NO15G02630.1-protein|Name=NO15G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MDCLKCKASLKSVMARPRPKALLDALAETGIQTLENAPESRRAAIAASTQ
RHFQGGGGGGRGQQDGGEKSETKISGNYGTGGAAGVGGAGATLNIKCLNC
AEEGIAMKARAYMEAPPMSVVLCANRLQDRREMEEALVHELVHVYDHALV
KMDLTNCAELAYSEIRAAREAECHYTSQLCSWFKKQCVKSTATRSTATLF
PEEGAKCVMGVFEAAFKDMGPEQLHAGLTTGGGAGGDKGGGARGGREGRR
EGRGGEGGGKGREVRPRLDVLRRRHR*
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mRNA from alignment at chr15:717559..719410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02630.1 ID=NO15G02630.1|Name=NO15G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at chr15:717559..719410+ (Nannochloropsis oceanica)
CTTGTGCTTGACCACGTTCACAAGATTTGCTCTATCTTGTCTGTTTTATT
TTCAGTGTACCCTCAGGGAGGAATATAAATGCTGCAGCCGAAGCAGGCCG
AGTCTGCCAAATCTTAGTGTTGCGTTTGACTTGTGAAAAGGCAGGCAACC
CTCCCAAGTGTGGCTGTCTGGCCCATGCTGAAGGCACAAAGAGCAGCAGG
CTGCGGCGACGCGCAACTCTTCTCTCTGCTGCCATATTGATACGTTCATC
CCCGTCTGTCAAGACCGGCACCCTGAACAGTCATACAGCTTGCTTCCAAG
CAGAAGTGCATGCTTTTGTGTGTTTGTGTGCATTGCGTGGCAGGGGAAGA
TGCAGACTTAGATGAGCCCTACCATGTATGACCCCCGAAGCCATGCCATC
CGCACCATCACCAACACGTGACGCACGCCCGCTGCTCATTCCCCAACCCG
CACCACTGCCACATCCACAGTCTTGGCTGCACCAACAGCACCTGAATCTC
CAGTAGCAAGCCCACCACGTGCTGCTTCTGCCGGCGTGGTGTGGCCTTTT
TGTGACTGCTTCAATCCAAGGAGCAATCCCTGTGGGCTCTGATAAGTCGC
CCTTCCCCTCCGCACCCTTGCTCTCCACAATCACCGGCGCCCAGACAGCC
CGATGGACTGTCTGAAGTGCAAGGCCTCTCTCAAGTCCGTCATGGCACGG
CCCCGCCCCAAGGCGCTACTGGATGCGCTGGCCGAGACGGGCATCCAAAC
CTTAGAAAATGCGCCCGAGTCCCGTCGTGCCGCGATAGCCGCCTCGACTC
AAAGACACTTCCAGGGAGGAGGAGGAGGAGGAAGAGGACAACAAGACGGA
GGGGAAAAGAGTGAAACAAAAATAAGTGGAAATTATGGTACGGGGGGCGC
AGCAGGAGTAGGAGGAGCAGGGGCGACTTTAAATATAAAGTGCCTTAACT
GTGCAGAGGAAGGGATTGCGATGAAAGCACGGGCATACATGGAGGCGCCG
CCAATGTCGGTGGTGTTGTGTGCGAATCGTTTGCAAGATCGTCGGGAGAT
GGAGGAGGCACTGGTCCATGAGTTGGTGCATGTTTATGATGTATGTAGGG
TAGTAGGAGCAGGGGAGGGAGGGAGGGAGGGGAGAGGGGAAAACTGACGA
AGGAGGGGAGAGCTGTCGACAAGGAAGTATATGTCCTTTGTTAATCGGTG
GAAGAGGCGTCTGTTACTAGATGTCCCTGATTTTATGCCTGATAATTACT
CCTCCCTCCCTCCCTTTCTTCCCACAGCACGCCCTTGTCAAGATGGACCT
CACCAATTGCGCCGAGCTTGCCTACAGTGAGATCCGAGCCGCTCGCGAGG
CCGAATGCCATTACACCTCTCAGCTGTGTTCGTGGTTCAAGAAGCAGTGC
GTGAAGAGCACGGCGACCCGGAGCACAGCCACCTTGTTCCCCGAGGAGGG
TGCGAAGTGTGTGATGGGAGTATTTGAGGCTGCCTTTAAGGACATGGGTC
CTGAACAATTGCATGCCGGGTTGACCACAGGAGGGGGGGCTGGAGGGGAT
AAAGGAGGTGGTGCACGAGGAGGGCGGGAAGGAAGAAGGGAGGGAAGAGG
AGGAGAAGGGGGGGGGAAAGGGAGGGAGGTAAGGCCCCGATTGGACGTAC
TCCGACGGCGGCATCGATGAGAGTTTTGATAGATAATCTACAGACAACTG
GCCCTCCCTCCGCCCCTTCCTCCTCCTCTTTCTCCGCGTTTTCGGGGGTA
TCAGGAATGGGGCTGGCGGAGACTTTGGCCACGGCTTTTGGGATTCGATG
ACCAATATATGCGATGGAGATAGAAGGGGGGAGAGGGGAGATCACTCACA
CA
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Coding sequence (CDS) from alignment at chr15:717559..719410+

>NO15G02630.1 ID=NO15G02630.1|Name=NO15G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at chr15:717559..719410+ (Nannochloropsis oceanica)
ATGGACTGTCTGAAGTGCAAGGCCTCTCTCAAGTCCGTCATGGCACGGCC
CCGCCCCAAGGCGCTACTGGATGCGCTGGCCGAGACGGGCATCCAAACCT
TAGAAAATGCGCCCGAGTCCCGTCGTGCCGCGATAGCCGCCTCGACTCAA
AGACACTTCCAGGGAGGAGGAGGAGGAGGAAGAGGACAACAAGACGGAGG
GGAAAAGAGTGAAACAAAAATAAGTGGAAATTATGGTACGGGGGGCGCAG
CAGGAGTAGGAGGAGCAGGGGCGACTTTAAATATAAAGTGCCTTAACTGT
GCAGAGGAAGGGATTGCGATGAAAGCACGGGCATACATGGAGGCGCCGCC
AATGTCGGTGGTGTTGTGTGCGAATCGTTTGCAAGATCGTCGGGAGATGG
AGGAGGCACTGGTCCATGAGTTGGTGCATGTTTATGATCACGCCCTTGTC
AAGATGGACCTCACCAATTGCGCCGAGCTTGCCTACAGTGAGATCCGAGC
CGCTCGCGAGGCCGAATGCCATTACACCTCTCAGCTGTGTTCGTGGTTCA
AGAAGCAGTGCGTGAAGAGCACGGCGACCCGGAGCACAGCCACCTTGTTC
CCCGAGGAGGGTGCGAAGTGTGTGATGGGAGTATTTGAGGCTGCCTTTAA
GGACATGGGTCCTGAACAATTGCATGCCGGGTTGACCACAGGAGGGGGGG
CTGGAGGGGATAAAGGAGGTGGTGCACGAGGAGGGCGGGAAGGAAGAAGG
GAGGGAAGAGGAGGAGAAGGGGGGGGGAAAGGGAGGGAGGTAAGGCCCCG
ATTGGACGTACTCCGACGGCGGCATCGATGA
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Synonyms
Publications