NO15G02420.1, NO15G02420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02420.1
Unique NameNO15G02420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr15:666785..668291 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:666785..668291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO15G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02420NO15G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02420.1NO15G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02420.1.cds1NO15G02420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02420.1.cds2NO15G02420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02420.1.cds3NO15G02420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02420.1 ID=NO15G02420.1|Name=NO15G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ATGTTGAACAAGGGGCAAGACGCTGGCACTCCACCCCCTGCCCACCCCAA
GGCAAAGAGCAAGAAAGAGGATGAGCATGAAGAGGAGGACATCGGCAACG
GTAGCGACGCAAGCAGTGGCAGCAGCACCTCGAACAGCAGCAACAGCAGT
GGTAGCAGTAGTGGCCCATCCTCATCCTCCTCTACATTTTCCACATCCTT
GGCGTCGCGATCGCCGCCCCGCTCCGCCAAGATGGGGAAGCACCGAAAGC
GGAAGAGAAAGGAAAAGGAAAAGGGGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGAGGCTCAACGGACTTAATCGCCTTGATAGCCATGGGGT
CAGCCGCAGCCGCAGGAGGAGTCCTGTAAGAGAGATGGGAGAATCCCGGA
AGGACAAGAAGAAGGGGAATAGGAGGGAGGAGGAGGTGGATGAGGAGGAG
GATTGGAAGAAGGCAATCACTGCTGGGAAGAAGCGTAGCCGAAGCCCGAA
TAGGGATGGAAGGAAGAAGATGAAGAAGGGGGAAGCTCGTGAAAAGGACT
GGGATATTATGAAGAGTGAGAAACGGCGGCGGGAGGAACGGGAGAACAGG
CGTCGCAGCCGAAGTCGAAGTCGAAGAGGGATCACCACAGGGATCAGAAT
GATCAGCACGGAGGAGGAGGAGGAGGTGGAAGGTGGGGATGCCGCCCTGG
TCGCGACCGTTTCGGCCACCCTTCTCGATATGGTGGGTGCGATGGCCGAG
GGGGTGATGAAGGAGGAGATAGGGGGGAAGGAAGTGGGGGAGGGGGGAGG
CACGAGCAGTACGGTGTGGATGGCGGCGGCTTTGGGGGTGGGGGTGGTGG
TAGCGGACCTGCGCCGTCCGTCAATGGAGGTAGAGAAGGAGGAGGCGTTG
CTGCGTATTCTAACACCTTCGGCGTGCGGGATAATCACCGAGGAGGAGGA
GGAGGCGGAAGAAGAGGAGGAGGAGGAGGAGGAAAAGAGGGAGGAAGATA
TTGGGGATGCGCACGAGAAGGCGGCAGACATCGGGAAATGGAGAAAGAGG
TGGACGGAGAAAGGGGAAGAGGAAGAGAAGGCGACCGGGGCCGAGGAAGA
GAAGGAGGGCGGGAGGGAGGGAGGAGGTTACAAGGAGGGGAGGTGGTGCG
GGACGGCTATTCCAAGGGCATTCATGTCGACGAAGCGCCAGAAAGGGCAA
GGCCGTATGCCTGTGACGTGA
back to top

protein sequence of NO15G02420.1

>NO15G02420.1-protein ID=NO15G02420.1-protein|Name=NO15G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MLNKGQDAGTPPPAHPKAKSKKEDEHEEEDIGNGSDASSGSSTSNSSNSS
GSSSGPSSSSSTFSTSLASRSPPRSAKMGKHRKRKRKEKEKGEEEEEEEE
EEEERLNGLNRLDSHGVSRSRRRSPVREMGESRKDKKKGNRREEEVDEEE
DWKKAITAGKKRSRSPNRDGRKKMKKGEAREKDWDIMKSEKRRREERENR
RRSRSRSRRGITTGIRMISTEEEEEVEGGDAALVATVSATLLDMVGAMAE
GVMKEEIGGKEVGEGGGTSSTVWMAAALGVGVVVADLRRPSMEVEKEEAL
LRILTPSACGIITEEEEEAEEEEEEEEEKREEDIGDAHEKAADIGKWRKR
WTEKGEEEEKATGAEEEKEGGREGGGYKEGRWCGTAIPRAFMSTKRQKGQ
GRMPVT*
back to top

mRNA from alignment at chr15:666785..668291+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02420.1 ID=NO15G02420.1|Name=NO15G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp|location=Sequence derived from alignment at chr15:666785..668291+ (Nannochloropsis oceanica)
ATGTTGAACAAGGGGCAAGACGCTGGCACTCCACCCCCTGCCCACCCCAA
GGCAAAGAGCAAGAAAGAGGATGAGCATGAAGAGGAGGACATCGGCAACG
GTAGCGACGCAAGCAGTGGCAGCAGCACCTCGAACAGCAGCAACAGCAGT
GGTAGCAGTAGTGGCCCATCCTCATCCTCCTCTACATTTTCCACATCCTT
GGCGTCGCGATCGCCGCCCCGCTCCGCCAAGATGGGGAAGCACCGAAAGC
GGAAGAGAAAGGAAAAGGAAAAGGGGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGAGGCTCAACGGACTTAATCGCCTTGATAGCCATGGGGT
CAGCCGCAGCCGCAGGAGGAGTCCTGTAAGAGAGATGGGAGAATCCCGGA
AGGACAAGAAGAAGGGGAATAGGAGGGAGGAGGAGGTGGATGAGGAGGAG
GATTGGAAGAAGGCAATCACTGCTGGGAAGAAGCGTAGCCGAAGCCCGAA
TAGGGATGGAAGGAAGAAGATGAAGAAGGGGGAAGCTCGTGAAAAGGACT
GGGATATTATGAAGAGTGAGAAACGGCGGCGGGAGGAACGGGAGAACAGG
CGTCGCAGCCGAAGTCGAAGTCGAAGTAAGGAGCGGGAGGAGCGACGAGG
ACGTGAAGGAGGGCGGGAGGGAGGACGTTCTGACCGTGATCGGCGTTTAA
GGGGCGAACACCGTTCGGAGGATAGGAGGGATCACCACAGGGATCAGAAT
GATCAGCACGGAGGAGGAGGAGGAGGTGGAAGGTGGGGATGCCGCCCTGG
TCGCGACCGTTTCGGCCACCCTTCTCGATATGGTGGGTGCGATGGCCGAG
GGGGTGATGAAGGAGGAGATAGGGGGGAAGGAAGTGGGGGAGGGGGGAGG
CACGAGCAGTACGGTGTGGATGGCGGCGGCTTTGGGGGTGGGGGTGGTGG
TAGCGGACGTGGGCGTGATGAGAGATGGCACCAGCAATATGCACGTCGTC
CTCTTCCGCCTTCCTCCCCCCCCATGCCTCCTCCTTCCCCACCAAAATCA
AAGCGCTCGGGCATTTTTCAATACCTTGCCGATGTCCCTGGAGTGACCCT
TCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCTCTGCTGCATCAGCTGCGC
CGTCCGTCAATGGAGGTAGAGAAGGAGGAGGCGTTGCTGCGTATTCTAAC
ACCTTCGGCGTGCGGGATAATCACCGAGGAGGAGGAGGAGGCGGAAGAAG
AGGAGGAGGAGGAGGAGGAAAAGAGGGAGGAAGATATTGGGGATGCGCAC
GAGAAGGCGGCAGACATCGGGAAATGGAGAAAGAGGTGGACGGAGAAAGG
GGAAGAGGAAGAGAAGGCGACCGGGGCCGAGGAAGAGAAGGAGGGCGGGA
GGGAGGGAGGAGGTTACAAGGAGGGGAGGTGGTGCGGGACGGCTATTCCA
AGGGCATTCATGTCGACGAAGCGCCAGAAAGGGCAAGGCCGTATGCCTGT
GACGTGA
back to top

Coding sequence (CDS) from alignment at chr15:666785..668291+

>NO15G02420.1 ID=NO15G02420.1|Name=NO15G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr15:666785..668291+ (Nannochloropsis oceanica)
ATGTTGAACAAGGGGCAAGACGCTGGCACTCCACCCCCTGCCCACCCCAA
GGCAAAGAGCAAGAAAGAGGATGAGCATGAAGAGGAGGACATCGGCAACG
GTAGCGACGCAAGCAGTGGCAGCAGCACCTCGAACAGCAGCAACAGCAGT
GGTAGCAGTAGTGGCCCATCCTCATCCTCCTCTACATTTTCCACATCCTT
GGCGTCGCGATCGCCGCCCCGCTCCGCCAAGATGGGGAAGCACCGAAAGC
GGAAGAGAAAGGAAAAGGAAAAGGGGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGAGGCTCAACGGACTTAATCGCCTTGATAGCCATGGGGT
CAGCCGCAGCCGCAGGAGGAGTCCTGTAAGAGAGATGGGAGAATCCCGGA
AGGACAAGAAGAAGGGGAATAGGAGGGAGGAGGAGGTGGATGAGGAGGAG
GATTGGAAGAAGGCAATCACTGCTGGGAAGAAGCGTAGCCGAAGCCCGAA
TAGGGATGGAAGGAAGAAGATGAAGAAGGGGGAAGCTCGTGAAAAGGACT
GGGATATTATGAAGAGTGAGAAACGGCGGCGGGAGGAACGGGAGAACAGG
CGTCGCAGCCGAAGTCGAAGTCGAAGAGGGATCACCACAGGGATCAGAAT
GATCAGCACGGAGGAGGAGGAGGAGGTGGAAGGTGGGGATGCCGCCCTGG
TCGCGACCGTTTCGGCCACCCTTCTCGATATGGTGGGTGCGATGGCCGAG
GGGGTGATGAAGGAGGAGATAGGGGGGAAGGAAGTGGGGGAGGGGGGAGG
CACGAGCAGTACGGTGTGGATGGCGGCGGCTTTGGGGGTGGGGGTGGTGG
TAGCGGACCTGCGCCGTCCGTCAATGGAGGTAGAGAAGGAGGAGGCGTTG
CTGCGTATTCTAACACCTTCGGCGTGCGGGATAATCACCGAGGAGGAGGA
GGAGGCGGAAGAAGAGGAGGAGGAGGAGGAGGAAAAGAGGGAGGAAGATA
TTGGGGATGCGCACGAGAAGGCGGCAGACATCGGGAAATGGAGAAAGAGG
TGGACGGAGAAAGGGGAAGAGGAAGAGAAGGCGACCGGGGCCGAGGAAGA
GAAGGAGGGCGGGAGGGAGGGAGGAGGTTACAAGGAGGGGAGGTGGTGCG
GGACGGCTATTCCAAGGGCATTCATGTCGACGAAGCGCCAGAAAGGGCAA
GGCCGTATGCCTGTGACGTGA
back to top
Synonyms
Publications