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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr15 | genome | chr15:633657..636728 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G02280.1 vs.
Match: EWM22380.1 (CCT domain protein [Nannochloropsis gaditana]) HSP 1 Score: 383.3 bits (983), Expect = 1.500e-102 Identity = 325/629 (51.67%), Postives = 388/629 (61.69%), Query Frame = 0
Query: 1 MIMATPAPAA-PTADVITGAPAAVNKATHPAATSTATKAGGVTTDPVPAAATPWELKTGSEWASISETSSNATTAGSSVASSVGSVGNSPGPHLNNDEEEGASSEHDDTLVAAAI---PSAAALPALRQVTLPAGLV-VPAAGEVKRDVSVEMDSEDAEAASILSKVLPDMQKLTSTFADTRSSCNSSSTSNNNGGSSNSISNNSSTIANNTDPQDMSQGGSTTSSRSRRSGAKGYEDLLDCLASLASNRAPLGPLEVLHRRVSRMTMSVDDMDVIPSRSGGQGREGGREGGQFSSPFAPSQMLAAMAARMEESEEEEEEEEEEEEEEAGRYYYAATGIRGHGRGEEEEGGGEGGGGRRARAASNPEGCDVWRRYESAAGTGAMGGAGTGAGAGTAFARSNL--------SGGLPPLHPNSSSSSSSIINVQSGKSSPGRTNTMASAAATAAAAAAAAAAAAAAGGAGREGGQRNGSILPHMLAKYADVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRIRVKGRFVKLLSKEEGGREGGTEGGGMGRSVSGHTLAVIEEGVVGERVEEGGGEESEESEEMEEEEEEEKEEEEEKEEEELPVRRMRRHSIAF 617
MI+A+PAPAA P A+ GA + +T A + P+PAAATPWE+K+ EW +S+TSSN+T+AGSSVA SVGSVGNSP PH DEE+ A + D +AAA+ P P+L P G V PAA VKR+ S EM++EDAEAASILSKVLPDM KLT+TFAD R S ++ +GG S+ ++ T + + G +S SRR GAKGYEDLLDCLASLASNR P+ P H R SRM SVDDMD+ Q +G + SPF+PS + AA E+ +EEEEE+ EEAGRYYYA TG G G G + G E G GRR RAASNPEGCD WRRY ++ AM G G T + + + G + H +S++ S+ + +S T+ + A AAAA+AAA+AAAA GAG G SILPHMLAKY+DVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKR+RVKGRFVKL KE G EGG GGM S SG LAVI+EGV GEE EEEE E+EEE E+ E+E PV RMRRHSI F
Sbjct: 1 MILASPAPAATPAAEKAAGAALTRDSSTTVPKAPVAGSSDAQNA-PIPAAATPWEVKSVQEWGGLSDTSSNSTSAGSSVAGSVGSVGNSPRPHPPVDEEDLACAS--DLEMAAAVVLSPPTPGQPSLAPSAAPPGPVSAPAACTVKREASEEMETEDAEAASILSKVLPDMHKLTTTFADARGSIPKKASVQGHGGGSDRAASIG------TSREAIGDAGRGSSPGSRRGGAKGYEDLLDCLASLASNRPPVVPA---HCRASRM--SVDDMDL------EQHCRRPNKGSRGPSPFSPSLLAAARGM------EDSDEEEEEDGEEAGRYYYA-TGGAGLGGGGLD--GMEVGRGRRPRAASNPEGCDTWRRYGTSGVPVAMDRKGLAKGQPTHASGAAVHDKAGPAAGGSMITFHGGLASTADSLASEGHAAAS-----TLQAGARAAAAASAAASAAAAEAGAGSGAG----SILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKEAGEEEGG---GGMSWSPSGQALAVIQEGVAETAKSVVDGEE--------EEEEGEEEEESEEMEKEGPVCRMRRHSICF 580
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G02280.1 ID=NO15G02280.1|Name=NO15G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2594bp ATGATCATGGCTACCCCTGCACCGGCCGCTCCCACGGCGGATGTGATAAC TGGTGCTCCCGCCGCGGTCAACAAAGCCACGCACCCTGCTGCAACATCGA CGGCGACTAAGGCAGGTGGTGTCACGACAGACCCCGTCCCGGCTGCGGCC ACGCCCTGGGAACTTAAGACCGGATCGGAATGGGCGTCTATCAGTGAGAC CTCCAGCAATGCCACCACCGCCGGCAGCTCCGTGGCCAGCAGTGTTGGAA GTGTCGGTAACAGCCCTGGCCCCCACCTTAACAATGACGAGGAGGAGGGA GCCTCTTCAGAACACGACGACACATTAGTCGCTGCTGCCATTCCCTCGGC TGCTGCCCTTCCCGCCCTCCGTCAGGTCACCCTTCCTGCAGGGCTTGTCG TCCCGGCCGCGGGAGAGGTCAAGCGTGACGTATCTGTAGAGATGGATTCG GAGGACGCGGAGGCTGCGAGTATTTTGTCTAAGGTCTTACCTGACATGCA GAAGCTCACGAGCACTTTTGCTGACACCCGAAGCAGTTGCAACAGCAGCA GCACCAGCAACAACAACGGCGGCAGCAGCAACAGCATTAGCAACAATAGT AGCACTATCGCCAACAACACAGATCCACAGGACATGAGCCAGGGCGGCAG CACTACAAGCAGTAGGAGTAGAAGAAGTGGGGCGAAGGGTTACGAGGACT TGTTAGATTGTCTTGCCTCTCTGGCATCGAACCGCGCGCCGTTGGGGCCG TTGGAAGTGTTACACCGTCGTGTTTCCCGAATGACTATGTCGGTGGATGA CATGGACGTCATCCCATCCCGTAGTGGCGGCCAGGGAAGGGAGGGAGGGA GGGAAGGAGGCCAGTTTTCGAGTCCTTTCGCCCCGAGTCAAATGTTAGCG GCGATGGCGGCACGGATGGAAGAGAGCGAAGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAAGAGGCAGGTCGGTATTACTATGCGGCGACGGGGA TACGGGGCCATGGTAGAGGGGAGGAGGAGGAGGGTGGGGGGGAGGGAGGG GGAGGGCGTCGGGCGCGGGCAGCCTCTAATCCAGAGGGATGCGATGTGTG GCGGCGGTACGAGTCTGCTGCTGGTACTGGAGCGATGGGAGGCGCTGGAA CTGGAGCAGGGGCAGGCACGGCTTTTGCCCGTAGCAACCTTTCGGGTGGC TTGCCTCCACTCCACCCCAACAGCAGCAGCAGCAGCAGCAGCATCATCAA CGTCCAGAGCGGGAAAAGTTCGCCCGGAAGGACCAATACCATGGCGTCAG CTGCCGCGACTGCAGCAGCAGCAGCAGCAGCAGCGGCCGCCGCGGCGGCA GCTGGAGGGGCAGGGAGGGAGGGGGGGCAGAGAAATGGCAGCATTTTGCC GCACATGCTTGCGAAGTACGCGGATGTTTATAATAAGCACGGCCGGATCG GGATTTATACGAGGGACGAACGTGACGCCATCATCGCTCGTTTTCGTGAG AAACGGCAACGACGGGTGTGGAAGAAGAAGATCCGTTACTCATGCCGCAA GAACCTGGCCGACAAGCGCATACGTGTGAAGGGACGCTTCGTGAAGTTGC TATCCAAGGAGGAAGGAGGGAGGGAGGGAGGGACTGAGGGAGGGGGGATG GGTCGCTCGGTGTCAGGGCATACATTGGCAGTGATTGAGGAGGGGGTGGT GGGAGAAAGGGTGGAGGAGGGAGGAGGGGAGGAATCGGAGGAGAGCGAGG AGATGGAGGAGGAGGAGGAGGAGGAAAAGGAAGAGGAGGAGGAAAAGGAA GAAGAGGAGTTGCCCGTCCGTCGGATGCGAAGACATAGTATTGCTTTCTA GAGGGGACGGAGGGAGGGAGGGAGGGAGTGAGTATTTGTGCGAAGTGCCT GTATCATACCTGCATGCAGGCCACGAGAGGGAGAGGGAGGAAGGGAAGGA GGGAAGGATATCGGTTGCATTTGATCCATTGCATAAGTGGGTCAACAATA CCATGTACAGGCAAGCAATGAGACTGAGGGAAAAGAGGAGAAGAGAAGGT GGAGAGAGAGGGAAAACACAATATTGACGTTTGTAGCTCGTGCTCGTCAT GTGCCTGGATAGGAATAGAAAAGAGGGGGAAAAGCAAGATTGAGAATGCT TGGACTGGTAGAGGAGACGAAGGAGATGGAAGAAAATGATTGACAGATGA CAGATTGAAAATATGTGTGAGAGGGGGTCATGAAGTGAGGGAGGAAAAAG AGGGGGGAACATGTGCGGGGTGGAGTATAGGATAATAACGCACAACGGAT GAAGCATAAGCGCGAAGAGAATGATAAGAAATTTCATGATAGAGTTATAG CAACTTGTACAGAGTGAGAGACGAAAGAAAGGGAGGGAGGGAAGGGAGAA AGTTAAGCATGGAAAAGCGAGCAGGTTGTGTAGCTTTGCTTCTTGCTCGA TATATGAAATTACGATAAAAGCAACAAGTAGTAATACTCACATGCACCCA ATCACGTTGAGAGTGAGCGCACAGACACGATCAGAAGGGCGTTTTCTCAG TCATTACGCTTTCTCTGTCTGTCTGTGTCTGTGTCTGTTTTGTG back to topprotein sequence of NO15G02280.1 >NO15G02280.1-protein ID=NO15G02280.1-protein|Name=NO15G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp MIMATPAPAAPTADVITGAPAAVNKATHPAATSTATKAGGVTTDPVPAAA TPWELKTGSEWASISETSSNATTAGSSVASSVGSVGNSPGPHLNNDEEEG ASSEHDDTLVAAAIPSAAALPALRQVTLPAGLVVPAAGEVKRDVSVEMDS EDAEAASILSKVLPDMQKLTSTFADTRSSCNSSSTSNNNGGSSNSISNNS STIANNTDPQDMSQGGSTTSSRSRRSGAKGYEDLLDCLASLASNRAPLGP LEVLHRRVSRMTMSVDDMDVIPSRSGGQGREGGREGGQFSSPFAPSQMLA AMAARMEESEEEEEEEEEEEEEEAGRYYYAATGIRGHGRGEEEEGGGEGG GGRRARAASNPEGCDVWRRYESAAGTGAMGGAGTGAGAGTAFARSNLSGG LPPLHPNSSSSSSSIINVQSGKSSPGRTNTMASAAATAAAAAAAAAAAAA AGGAGREGGQRNGSILPHMLAKYADVYNKHGRIGIYTRDERDAIIARFRE KRQRRVWKKKIRYSCRKNLADKRIRVKGRFVKLLSKEEGGREGGTEGGGM GRSVSGHTLAVIEEGVVGERVEEGGGEESEESEEMEEEEEEEKEEEEEKE EEELPVRRMRRHSIAF* back to topmRNA from alignment at chr15:633657..636728+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G02280.1 ID=NO15G02280.1|Name=NO15G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3072bp|location=Sequence derived from alignment at chr15:633657..636728+ (Nannochloropsis oceanica) ATGATCATGGCTACCCCTGCACCGGCCGCTCCCACGGCGGATGTGATAAC
TGGTGCTCCCGCCGCGGTCAACAAAGCCACGCACCCTGCTGCAACATCGA
CGGCGACTAAGGCAGGTGGTGTCACGACAGACCCCGTCCCGGCTGCGGCC
ACGCCCTGGGAACTTAAGACCGGATCGGAATGGTACGTTTGTCTGAACGT
TTGAAAGGAGGGAAGAATGGAGGAAGGAGTGGGGGGAGGAGGCGGAGCTT
GAAGGCGGTGGTTGCTGCTTTGCCTGCCCTAAGGGCGGACTGACCGAGAT
TCTGTTGACCAACTCGCATGCATTAAGCAACCTAAAAGCATAAAACCCCA
AACTCTCTCTCCCTCTCCTCTTGTACTTCTATCCAGGCTGGTTCTCGCAC
CACCAGCTAGCCTAAGCTTCTCTTTGCTTAATCCATTCAGATTCTGTCCC
TTATCCCCCCTCCTCCTCTTCCTGCTTCTCCCCCACCTCCCCACACCCAA
CAGGGCGTCTATCAGTGAGACCTCCAGCAATGCCACCACCGCCGGCAGCT
CCGTGGCCAGCAGTGTTGGAAGTGTCGGTAACAGCCCTGGCCCCCACCTT
AACAATGACGAGGAGGAGGGAGCCTCTTCAGAACACGACGACACATTAGT
CGCTGCTGCCATTCCCTCGGCTGCTGCCCTTCCCGCCCTCCGTCAGGTCA
CCCTTCCTGCAGGGCTTGTCGTCCCGGCCGCGGGAGAGGTCAAGCGTGAC
GTATCTGTAGAGATGGATTCGGAGGACGCGGAGGCTGCGAGTATTTTGTC
TAAGGTCTTACCTGACATGCAGAAGCTCACGAGCACTTTTGCTGACACCC
GAAGCAGTTGCAACAGCAGCAGCACCAGCAACAACAACGGCGGCAGCAGC
AACAGCATTAGCAACAATAGTAGCACTATCGCCAACAACACAGATCCACA
GGACATGAGCCAGGGCGGCAGCACTACAAGCAGTAGGAGTAGAAGAAGTG
GGGCGAAGGGTTACGAGGACTTGTTAGATTGTCTTGCCTCTCTGGCATCG
AACCGCGCGCCGTTGGGGCCGTTGGAAGTGTTACACCGTCGTGTTTCCCG
AATGACTATGTCGGTGGATGACATGGACGTCATCCCATCCCGTAGTGGCG
GCCAGGGAAGGGAGGGAGGGAGGGAAGGAGGCCAGTTTTCGAGTCCTTTC
GCCCCGAGTCAAATGTTAGCGGCGATGGCGGCACGGATGGAAGAGAGCGA
AGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGCAGGTCGGT
ATTACTATGCGGCGACGGGGATACGGGGCCATGGTAGAGGGGAGGAGGAG
GAGGGTGGGGGGGAGGGAGGGGGAGGGCGTCGGGCGCGGGCAGCCTCTAA
TCCAGAGGGATGCGATGTGTGGCGGCGGTACGAGTCTGCTGCTGGTACTG
GAGCGATGGGAGGCGCTGGAACTGGAGCAGGGGCAGGCACGGCTTTTGCC
CGTAGCAACCTTTCGGGTGGCTTGCCTCCACTCCACCCCAACAGCAGCAG
CAGCAGCAGCAGCATCATCAACGTCCAGAGCGGGAAAAGTTCGCCCGGAA
GGACCAATACCATGGCGTCAGCTGCCGCGACTGCAGCAGCAGCAGCAGCA
GCAGCGGCCGCCGCGGCGGCAGCTGGAGGGGCAGGGAGGGAGGGGGGGCA
GAGAAATGGCAGCATTTTGCCGCACATGCTTGCGAAGTACGCGGATGTTT
ATAATAAGCACGGCCGGATCGGGATTTATACGAGGGTAGGTTGGAGAGAG
GGAGGGAGGGAGGGAGGAAGGGATTATTAGACTTGGTTTTGTTGCCTCGG
TGGTTTATTTTCTCTCTTCGTTTAATTAAATGTTTTTCAATTTCCCCTCC
TCCTCACTCCTTACTATCTCTTCATTCATTTCCGTCGAACAGGACGAACG
TGACGCCATCATCGCTCGTTTTCGTGAGAAACGGCAACGACGGGTGTGGA
AGAAGAAGATCCGTTACTCATGCCGCAAGAACCTGGCCGACAAGCGCATA
CGTGTGAAGGGACGCTTCGTGAAGTTGCTATCCAAGGAGGAAGGAGGGAG
GGAGGGAGGGACTGAGGGAGGGGGGATGGGTCGCTCGGTGTCAGGGCATA
CATTGGCAGTGATTGAGGAGGGGGTGGTGGGAGAAAGGGTGGAGGAGGGA
GGAGGGGAGGAATCGGAGGAGAGCGAGGAGATGGAGGAGGAGGAGGAGGA
GGAAAAGGAAGAGGAGGAGGAAAAGGAAGAAGAGGAGTTGCCCGTCCGTC
GGATGCGAAGACATAGTATTGCTTTCTAGAGGGGACGGAGGGAGGGAGGG
AGGGAGTGAGTATTTGTGCGAAGTGCCTGTATCATACCTGCATGCAGGCC
ACGAGAGGGAGAGGGAGGAAGGGAAGGAGGGAAGGATATCGGTTGCATTT
GATCCATTGCATAAGTGGGTCAACAATACCATGTACAGGCAAGCAATGAG
ACTGAGGGAAAAGAGGAGAAGAGAAGGTGGAGAGAGAGGGAAAACACAAT
ATTGACGTTTGTAGCTCGTGCTCGTCATGTGCCTGGATAGGAATAGAAAA
GAGGGGGAAAAGCAAGATTGAGAATGCTTGGACTGGTAGAGGAGACGAAG
GAGATGGAAGAAAATGATTGACAGATGACAGATTGAAAATATGTGTGAGA
GGGGGTCATGAAGTGAGGGAGGAAAAAGAGGGGGGAACATGTGCGGGGTG
GAGTATAGGATAATAACGCACAACGGATGAAGCATAAGCGCGAAGAGAAT
GATAAGAAATTTCATGATAGAGTTATAGCAACTTGTACAGAGTGAGAGAC
GAAAGAAAGGGAGGGAGGGAAGGGAGAAAGTTAAGCATGGAAAAGCGAGC
AGGTTGTGTAGCTTTGCTTCTTGCTCGATATATGAAATTACGATAAAAGC
AACAAGTAGTAATACTCACATGCACCCAATCACGTTGAGAGTGAGCGCAC
AGACACGATCAGAAGGGCGTTTTCTCAGTCATTACGCTTTCTCTGTCTGT
CTGTGTCTGTGTCTGTTTTGTG back to topCoding sequence (CDS) from alignment at chr15:633657..636728+ >NO15G02280.1 ID=NO15G02280.1|Name=NO15G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at chr15:633657..636728+ (Nannochloropsis oceanica) ATGATCATGGCTACCCCTGCACCGGCCGCTCCCACGGCGGATGTGATAAC TGGTGCTCCCGCCGCGGTCAACAAAGCCACGCACCCTGCTGCAACATCGA CGGCGACTAAGGCAGGTGGTGTCACGACAGACCCCGTCCCGGCTGCGGCC ACGCCCTGGGAACTTAAGACCGGATCGGAATGGGCGTCTATCAGTGAGAC CTCCAGCAATGCCACCACCGCCGGCAGCTCCGTGGCCAGCAGTGTTGGAA GTGTCGGTAACAGCCCTGGCCCCCACCTTAACAATGACGAGGAGGAGGGA GCCTCTTCAGAACACGACGACACATTAGTCGCTGCTGCCATTCCCTCGGC TGCTGCCCTTCCCGCCCTCCGTCAGGTCACCCTTCCTGCAGGGCTTGTCG TCCCGGCCGCGGGAGAGGTCAAGCGTGACGTATCTGTAGAGATGGATTCG GAGGACGCGGAGGCTGCGAGTATTTTGTCTAAGGTCTTACCTGACATGCA GAAGCTCACGAGCACTTTTGCTGACACCCGAAGCAGTTGCAACAGCAGCA GCACCAGCAACAACAACGGCGGCAGCAGCAACAGCATTAGCAACAATAGT AGCACTATCGCCAACAACACAGATCCACAGGACATGAGCCAGGGCGGCAG CACTACAAGCAGTAGGAGTAGAAGAAGTGGGGCGAAGGGTTACGAGGACT TGTTAGATTGTCTTGCCTCTCTGGCATCGAACCGCGCGCCGTTGGGGCCG TTGGAAGTGTTACACCGTCGTGTTTCCCGAATGACTATGTCGGTGGATGA CATGGACGTCATCCCATCCCGTAGTGGCGGCCAGGGAAGGGAGGGAGGGA GGGAAGGAGGCCAGTTTTCGAGTCCTTTCGCCCCGAGTCAAATGTTAGCG GCGATGGCGGCACGGATGGAAGAGAGCGAAGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAAGAGGCAGGTCGGTATTACTATGCGGCGACGGGGA TACGGGGCCATGGTAGAGGGGAGGAGGAGGAGGGTGGGGGGGAGGGAGGG GGAGGGCGTCGGGCGCGGGCAGCCTCTAATCCAGAGGGATGCGATGTGTG GCGGCGGTACGAGTCTGCTGCTGGTACTGGAGCGATGGGAGGCGCTGGAA CTGGAGCAGGGGCAGGCACGGCTTTTGCCCGTAGCAACCTTTCGGGTGGC TTGCCTCCACTCCACCCCAACAGCAGCAGCAGCAGCAGCAGCATCATCAA CGTCCAGAGCGGGAAAAGTTCGCCCGGAAGGACCAATACCATGGCGTCAG CTGCCGCGACTGCAGCAGCAGCAGCAGCAGCAGCGGCCGCCGCGGCGGCA GCTGGAGGGGCAGGGAGGGAGGGGGGGCAGAGAAATGGCAGCATTTTGCC GCACATGCTTGCGAAGTACGCGGATGTTTATAATAAGCACGGCCGGATCG GGATTTATACGAGGGACGAACGTGACGCCATCATCGCTCGTTTTCGTGAG AAACGGCAACGACGGGTGTGGAAGAAGAAGATCCGTTACTCATGCCGCAA GAACCTGGCCGACAAGCGCATACGTGTGAAGGGACGCTTCGTGAAGTTGC TATCCAAGGAGGAAGGAGGGAGGGAGGGAGGGACTGAGGGAGGGGGGATG GGTCGCTCGGTGTCAGGGCATACATTGGCAGTGATTGAGGAGGGGGTGGT GGGAGAAAGGGTGGAGGAGGGAGGAGGGGAGGAATCGGAGGAGAGCGAGG AGATGGAGGAGGAGGAGGAGGAGGAAAAGGAAGAGGAGGAGGAAAAGGAA GAAGAGGAGTTGCCCGTCCGTCGGATGCGAAGACATAGTATTGCTTTCTA G back to top
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