NO15G02090.1, NO15G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02090.1
Unique NameNO15G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr15:590958..591674 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:590958..591674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G02090.1 vs.
Match: EWM22367.1 (glutathione s-transferase [Nannochloropsis gaditana])

HSP 1 Score: 273.9 bits (699), Expect = 4.800e-70
Identity = 140/240 (58.33%), Postives = 171/240 (71.25%), Query Frame = 0 
Query:    4 TRMSAAAAAAGDPSDPSRLRLVTNKKCPFAQKAWIALDAYYHSNGKSIQTGNGDISGSTAIAASSGGYELLEVGLYGGNGKPGWFREISPKGQVPVLWLPSGRIIIESDVILDHLTTLPEP-----NPLIPPSHEAYRQWQAILVPFLKTARTAIEHGDDASLFSALSQLEEQIPTPGPFLAGATFSVADCSVLPFMQRLNDKYQEVVEKAAPSLNAWYALAQKERCFQATRVGEYWMWW 239
            T +S  +A++  PS+PSRLRLVTNKKCPFAQKAWIAL+  Y                     A S  Y+LLEVGLYGG+GKP WF +ISPKGQVPVLWLPSGR ++ESD ILDHLT+LP P     NPL+P S +AY   +++L PFL++ARTAIE  D  SLFS+L+QL+++I  P PFLAGATFS AD ++LPFMQRL D + E+VE AAP L+ WY  A +E CF+AT V  YWMWW
Sbjct:   35 TPLSMISASSSKPSNPSRLRLVTNKKCPFAQKAWIALEYLY---------------------AGSKDYDLLEVGLYGGSGKPQWFLDISPKGQVPVLWLPSGRCVVESDNILDHLTSLPGPKLGFPNPLVPASPKAYTHLRSLLNPFLRSARTAIERKDITSLFSSLNQLDKEIIGPCPFLAGATFSAADATLLPFMQRLVDGHAELVEAAAPRLHEWYKDAAREPCFEATCVSGYWMWW 253
The following BLAST results are available for this feature:
BLAST of NO15G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22367.14.800e-7058.33glutathione s-transferase [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02090NO15G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02090.1NO15G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02090.1.cds1NO15G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02090.1 ID=NO15G02090.1|Name=NO15G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGACGCGAACAAGGATGTCTGCTGCTGCTGCTGCTGCGGGTGATCCCTC
CGACCCAAGCCGCCTCCGCCTCGTGACCAACAAAAAATGCCCCTTTGCAC
AAAAAGCATGGATTGCCCTCGACGCTTACTATCACAGCAACGGCAAGAGT
ATCCAGACTGGTAACGGCGACATCAGCGGATCCACAGCCATAGCTGCAAG
CTCAGGGGGCTACGAATTGCTGGAAGTGGGGTTATATGGAGGGAATGGCA
AGCCAGGCTGGTTCAGAGAGATAAGCCCCAAAGGACAGGTACCTGTTTTG
TGGTTGCCCAGCGGTCGTATTATCATTGAGAGTGACGTTATTTTAGACCA
CCTCACCACCCTCCCGGAGCCCAACCCTCTGATCCCTCCTTCCCACGAGG
CCTACAGACAATGGCAGGCCATCTTAGTACCATTTCTTAAGACAGCTCGT
ACAGCTATCGAGCATGGGGATGATGCCTCCCTTTTCTCCGCCTTGTCGCA
ACTCGAGGAACAAATTCCCACCCCTGGTCCTTTTTTGGCCGGCGCGACAT
TTTCTGTGGCAGACTGCAGTGTCCTACCATTCATGCAGCGGTTAAACGAT
AAGTACCAGGAGGTGGTGGAGAAGGCAGCGCCGAGTCTGAATGCATGGTA
TGCGCTCGCTCAAAAAGAGCGGTGTTTTCAGGCGACGCGTGTGGGGGAAT
ACTGGATGTGGTGGTGA
back to top

protein sequence of NO15G02090.1

>NO15G02090.1-protein ID=NO15G02090.1-protein|Name=NO15G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MTRTRMSAAAAAAGDPSDPSRLRLVTNKKCPFAQKAWIALDAYYHSNGKS
IQTGNGDISGSTAIAASSGGYELLEVGLYGGNGKPGWFREISPKGQVPVL
WLPSGRIIIESDVILDHLTTLPEPNPLIPPSHEAYRQWQAILVPFLKTAR
TAIEHGDDASLFSALSQLEEQIPTPGPFLAGATFSVADCSVLPFMQRLND
KYQEVVEKAAPSLNAWYALAQKERCFQATRVGEYWMWW*
back to top

mRNA from alignment at chr15:590958..591674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02090.1 ID=NO15G02090.1|Name=NO15G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp|location=Sequence derived from alignment at chr15:590958..591674+ (Nannochloropsis oceanica)
ATGACGCGAACAAGGATGTCTGCTGCTGCTGCTGCTGCGGGTGATCCCTC
CGACCCAAGCCGCCTCCGCCTCGTGACCAACAAAAAATGCCCCTTTGCAC
AAAAAGCATGGATTGCCCTCGACGCTTACTATCACAGCAACGGCAAGAGT
ATCCAGACTGGTAACGGCGACATCAGCGGATCCACAGCCATAGCTGCAAG
CTCAGGGGGCTACGAATTGCTGGAAGTGGGGTTATATGGAGGGAATGGCA
AGCCAGGCTGGTTCAGAGAGATAAGCCCCAAAGGACAGGTACCTGTTTTG
TGGTTGCCCAGCGGTCGTATTATCATTGAGAGTGACGTTATTTTAGACCA
CCTCACCACCCTCCCGGAGCCCAACCCTCTGATCCCTCCTTCCCACGAGG
CCTACAGACAATGGCAGGCCATCTTAGTACCATTTCTTAAGACAGCTCGT
ACAGCTATCGAGCATGGGGATGATGCCTCCCTTTTCTCCGCCTTGTCGCA
ACTCGAGGAACAAATTCCCACCCCTGGTCCTTTTTTGGCCGGCGCGACAT
TTTCTGTGGCAGACTGCAGTGTCCTACCATTCATGCAGCGGTTAAACGAT
AAGTACCAGGAGGTGGTGGAGAAGGCAGCGCCGAGTCTGAATGCATGGTA
TGCGCTCGCTCAAAAAGAGCGGTGTTTTCAGGCGACGCGTGTGGGGGAAT
ACTGGATGTGGTGGTGA
back to top

Coding sequence (CDS) from alignment at chr15:590958..591674+

>NO15G02090.1 ID=NO15G02090.1|Name=NO15G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr15:590958..591674+ (Nannochloropsis oceanica)
ATGACGCGAACAAGGATGTCTGCTGCTGCTGCTGCTGCGGGTGATCCCTC
CGACCCAAGCCGCCTCCGCCTCGTGACCAACAAAAAATGCCCCTTTGCAC
AAAAAGCATGGATTGCCCTCGACGCTTACTATCACAGCAACGGCAAGAGT
ATCCAGACTGGTAACGGCGACATCAGCGGATCCACAGCCATAGCTGCAAG
CTCAGGGGGCTACGAATTGCTGGAAGTGGGGTTATATGGAGGGAATGGCA
AGCCAGGCTGGTTCAGAGAGATAAGCCCCAAAGGACAGGTACCTGTTTTG
TGGTTGCCCAGCGGTCGTATTATCATTGAGAGTGACGTTATTTTAGACCA
CCTCACCACCCTCCCGGAGCCCAACCCTCTGATCCCTCCTTCCCACGAGG
CCTACAGACAATGGCAGGCCATCTTAGTACCATTTCTTAAGACAGCTCGT
ACAGCTATCGAGCATGGGGATGATGCCTCCCTTTTCTCCGCCTTGTCGCA
ACTCGAGGAACAAATTCCCACCCCTGGTCCTTTTTTGGCCGGCGCGACAT
TTTCTGTGGCAGACTGCAGTGTCCTACCATTCATGCAGCGGTTAAACGAT
AAGTACCAGGAGGTGGTGGAGAAGGCAGCGCCGAGTCTGAATGCATGGTA
TGCGCTCGCTCAAAAAGAGCGGTGTTTTCAGGCGACGCGTGTGGGGGAAT
ACTGGATGTGGTGGTGA
back to top
Synonyms
Publications