NO15G01930.1, NO15G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01930.1
Unique NameNO15G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1356
Alignment locationchr15:540760..542115 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:540760..542115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01930.1 vs.
Match: EWM22386.1 (Protein kinase, ATP binding site [Nannochloropsis gaditana])

HSP 1 Score: 107.5 bits (267), Expect = 1.100e-19
Identity = 165/458 (36.03%), Postives = 215/458 (46.94%), Query Frame = 0 
Query:    1 MDLSLSLVEIEGAGATHSDTFCGFSYIESSIPVPSSLPAYRLTPAVKAAARLQAAEDLEAFDGTGATPGSKKKKKKKKTPAGAAAAAAETAAAAAAAAAAAAAAAVVAMEVVTVTVPVMGEETLSLIRSGSGSSTTSSTATTTVESGKGEGNEEGEKGGILVGRGVAAEGDEGASGEKGRQQPHVRKWGVVAAPRAVQVQGDIEMQFPPLGGAVSSHPMRQQQQPALKSVISGVLPGPLILRN-----------GAATTTAP---AATAAVPAQSLGSKP----GTFSWSAVVATHKTTTSSIITTPTTSSSNAIKNLQSQPLSASTSSTTEKQVVIPSPPSYLSSAAATIASAIGAMEKASMPSASPVTGGTGSSDGECRDEE--NDDGFVVVTKTKHTSNTAAAGKKQQQQQQQQQNRQRQQRQQLSSSSLIANRTISPPINKLNGTATAYVPHGG 439
            MDLSLSLVEIEGA ATHSDTFCGFS+IESSI VP  +PAYRLTPA KA ARL AAE  EA + TG   G KKKKKK + PAGA       A  + A          + ++VV V       + ++ +   SGS  TSS+ATTT+ +  G+G EE E GG+      +     GA    G  QP+VRK   +     V+   D E  FP L GA S+H  R   QP  + +I     GP   R            GA   ++P    A  AV ++     P      FSWSAVVAT K   SS     T        +L  +   AS SS+   +   P      SS A    +A+  M    +   +    GT    G C   +  +DDGFV+V+KTK T               ++  + R   Q +  +  +A+   S     L  TA+A++P GG
Sbjct:  417 MDLSLSLVEIEGAEATHSDTFCGFSFIESSITVPDHVPAYRLTPAAKATARLDAAEKPEALNRTGGVCGKKKKKKKPQQPAGAGILVGVPATTSVAKPVEEPTVPRLMLQVVDVP----RTDPIAFLECESGS--TSSSATTTI-AELGDGIEE-EDGGVRDATSASRGTRTGAPW--GNAQPYVRKEEAMDVHATVRRNQD-ETHFPSL-GATSAH--RCLSQPNTQELI-----GPPATRGHGMVMSFTHSIGAGAPSSPIEGGAEIAVESERTVPSPRVPTAPFSWSAVVATKKGQASSPSCAQTVRDIGN-SSLPGKLFQASDSSSAGLKAPCP------SSVAEEGTTALSEMASKDVDLHNLSYTGT---FGNCERSKKMDDDGFVLVSKTKQT---------------KRGEKGRMGHQIVGKTGSMADAGPS-----LRATASAFIPAGG 825
The following BLAST results are available for this feature:
BLAST of NO15G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22386.11.100e-1936.03Protein kinase, ATP binding site [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01930NO15G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01930.1NO15G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01930.1.cds1NO15G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01930.1 ID=NO15G01930.1|Name=NO15G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ATGGATTTGTCTTTGTCGTTGGTTGAGATTGAGGGGGCGGGGGCCACACA
TAGTGATACATTCTGTGGGTTTTCGTACATTGAATCCTCGATTCCCGTCC
CTTCCTCCCTCCCTGCCTATCGGCTGACCCCCGCTGTCAAAGCTGCTGCT
CGTTTGCAAGCAGCTGAGGATCTTGAAGCTTTTGATGGTACGGGGGCTAC
TCCCGGGAGTAAGAAAAAGAAAAAGAAAAAGAAGACACCAGCAGGGGCAG
CAGCGGCAGCGGCAGAAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTAGTGGCGATGGAGGTTGTGACGGTAACTGTACC
GGTGATGGGGGAAGAGACATTAAGTCTGATTAGAAGTGGGAGTGGGAGTT
CAACCACCAGTAGTACTGCTACCACCACTGTGGAATCGGGAAAGGGAGAG
GGAAATGAGGAGGGGGAGAAAGGGGGAATTCTCGTAGGGAGGGGAGTGGC
AGCAGAGGGGGATGAGGGAGCGAGTGGTGAGAAGGGACGACAACAACCGC
ATGTGCGAAAATGGGGAGTGGTTGCGGCGCCGAGGGCCGTGCAAGTACAA
GGAGATATCGAAATGCAATTCCCTCCCTTGGGCGGTGCCGTCTCTTCCCA
CCCGATGAGGCAGCAGCAACAACCAGCATTGAAGAGCGTCATTTCAGGCG
TGCTACCGGGGCCGCTTATTCTCCGGAATGGAGCTGCTACAACTACTGCT
CCTGCTGCTACTGCTGCTGTCCCTGCTCAGTCATTGGGAAGCAAGCCAGG
CACCTTTTCGTGGAGTGCTGTTGTAGCCACCCACAAGACGACGACGAGCA
GCATCATCACAACTCCCACCACCTCCAGCAGCAATGCTATCAAAAATCTT
CAGTCCCAACCTCTTTCTGCTTCTACCTCCTCTACCACGGAGAAGCAAGT
AGTCATCCCTTCACCCCCTTCTTATCTTTCAAGCGCAGCTGCTACTATTG
CATCAGCGATTGGTGCCATGGAGAAGGCTAGTATGCCATCCGCATCCCCT
GTGACTGGTGGAACAGGCAGCAGCGACGGAGAGTGCCGGGATGAAGAAAA
TGACGACGGCTTTGTGGTGGTCACAAAGACCAAGCATACCAGCAACACTG
CTGCTGCCGGAAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAATCGG
CAGCGACAGCAGCGCCAACAGCTGTCGTCATCCTCTCTCATCGCAAACCG
AACAATCAGTCCTCCTATCAACAAGCTGAATGGTACAGCTACGGCTTATG
TGCCTCACGGTGGAGGAGGAGTGGGGGGGTGGGGGTCATACCGGTCAAAA
ACATGA
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protein sequence of NO15G01930.1

>NO15G01930.1-protein ID=NO15G01930.1-protein|Name=NO15G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MDLSLSLVEIEGAGATHSDTFCGFSYIESSIPVPSSLPAYRLTPAVKAAA
RLQAAEDLEAFDGTGATPGSKKKKKKKKTPAGAAAAAAETAAAAAAAAAA
AAAAAVVAMEVVTVTVPVMGEETLSLIRSGSGSSTTSSTATTTVESGKGE
GNEEGEKGGILVGRGVAAEGDEGASGEKGRQQPHVRKWGVVAAPRAVQVQ
GDIEMQFPPLGGAVSSHPMRQQQQPALKSVISGVLPGPLILRNGAATTTA
PAATAAVPAQSLGSKPGTFSWSAVVATHKTTTSSIITTPTTSSSNAIKNL
QSQPLSASTSSTTEKQVVIPSPPSYLSSAAATIASAIGAMEKASMPSASP
VTGGTGSSDGECRDEENDDGFVVVTKTKHTSNTAAAGKKQQQQQQQQQNR
QRQQRQQLSSSSLIANRTISPPINKLNGTATAYVPHGGGGVGGWGSYRSK
T*
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mRNA from alignment at chr15:540760..542115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01930.1 ID=NO15G01930.1|Name=NO15G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at chr15:540760..542115- (Nannochloropsis oceanica)
ATGGATTTGTCTTTGTCGTTGGTTGAGATTGAGGGGGCGGGGGCCACACA
TAGTGATACATTCTGTGGGTTTTCGTACATTGAATCCTCGATTCCCGTCC
CTTCCTCCCTCCCTGCCTATCGGCTGACCCCCGCTGTCAAAGCTGCTGCT
CGTTTGCAAGCAGCTGAGGATCTTGAAGCTTTTGATGGTACGGGGGCTAC
TCCCGGGAGTAAGAAAAAGAAAAAGAAAAAGAAGACACCAGCAGGGGCAG
CAGCGGCAGCGGCAGAAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTAGTGGCGATGGAGGTTGTGACGGTAACTGTACC
GGTGATGGGGGAAGAGACATTAAGTCTGATTAGAAGTGGGAGTGGGAGTT
CAACCACCAGTAGTACTGCTACCACCACTGTGGAATCGGGAAAGGGAGAG
GGAAATGAGGAGGGGGAGAAAGGGGGAATTCTCGTAGGGAGGGGAGTGGC
AGCAGAGGGGGATGAGGGAGCGAGTGGTGAGAAGGGACGACAACAACCGC
ATGTGCGAAAATGGGGAGTGGTTGCGGCGCCGAGGGCCGTGCAAGTACAA
GGAGATATCGAAATGCAATTCCCTCCCTTGGGCGGTGCCGTCTCTTCCCA
CCCGATGAGGCAGCAGCAACAACCAGCATTGAAGAGCGTCATTTCAGGCG
TGCTACCGGGGCCGCTTATTCTCCGGAATGGAGCTGCTACAACTACTGCT
CCTGCTGCTACTGCTGCTGTCCCTGCTCAGTCATTGGGAAGCAAGCCAGG
CACCTTTTCGTGGAGTGCTGTTGTAGCCACCCACAAGACGACGACGAGCA
GCATCATCACAACTCCCACCACCTCCAGCAGCAATGCTATCAAAAATCTT
CAGTCCCAACCTCTTTCTGCTTCTACCTCCTCTACCACGGAGAAGCAAGT
AGTCATCCCTTCACCCCCTTCTTATCTTTCAAGCGCAGCTGCTACTATTG
CATCAGCGATTGGTGCCATGGAGAAGGCTAGTATGCCATCCGCATCCCCT
GTGACTGGTGGAACAGGCAGCAGCGACGGAGAGTGCCGGGATGAAGAAAA
TGACGACGGCTTTGTGGTGGTCACAAAGACCAAGCATACCAGCAACACTG
CTGCTGCCGGAAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAATCGG
CAGCGACAGCAGCGCCAACAGCTGTCGTCATCCTCTCTCATCGCAAACCG
AACAATCAGTCCTCCTATCAACAAGCTGAATGGTACAGCTACGGCTTATG
TGCCTCACGGTGGAGGAGGAGTGGGGGGGTGGGGGTCATACCGGTCAAAA
ACATGA
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Coding sequence (CDS) from alignment at chr15:540760..542115-

>NO15G01930.1 ID=NO15G01930.1|Name=NO15G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr15:540760..542115- (Nannochloropsis oceanica)
ATGGATTTGTCTTTGTCGTTGGTTGAGATTGAGGGGGCGGGGGCCACACA
TAGTGATACATTCTGTGGGTTTTCGTACATTGAATCCTCGATTCCCGTCC
CTTCCTCCCTCCCTGCCTATCGGCTGACCCCCGCTGTCAAAGCTGCTGCT
CGTTTGCAAGCAGCTGAGGATCTTGAAGCTTTTGATGGTACGGGGGCTAC
TCCCGGGAGTAAGAAAAAGAAAAAGAAAAAGAAGACACCAGCAGGGGCAG
CAGCGGCAGCGGCAGAAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTAGTGGCGATGGAGGTTGTGACGGTAACTGTACC
GGTGATGGGGGAAGAGACATTAAGTCTGATTAGAAGTGGGAGTGGGAGTT
CAACCACCAGTAGTACTGCTACCACCACTGTGGAATCGGGAAAGGGAGAG
GGAAATGAGGAGGGGGAGAAAGGGGGAATTCTCGTAGGGAGGGGAGTGGC
AGCAGAGGGGGATGAGGGAGCGAGTGGTGAGAAGGGACGACAACAACCGC
ATGTGCGAAAATGGGGAGTGGTTGCGGCGCCGAGGGCCGTGCAAGTACAA
GGAGATATCGAAATGCAATTCCCTCCCTTGGGCGGTGCCGTCTCTTCCCA
CCCGATGAGGCAGCAGCAACAACCAGCATTGAAGAGCGTCATTTCAGGCG
TGCTACCGGGGCCGCTTATTCTCCGGAATGGAGCTGCTACAACTACTGCT
CCTGCTGCTACTGCTGCTGTCCCTGCTCAGTCATTGGGAAGCAAGCCAGG
CACCTTTTCGTGGAGTGCTGTTGTAGCCACCCACAAGACGACGACGAGCA
GCATCATCACAACTCCCACCACCTCCAGCAGCAATGCTATCAAAAATCTT
CAGTCCCAACCTCTTTCTGCTTCTACCTCCTCTACCACGGAGAAGCAAGT
AGTCATCCCTTCACCCCCTTCTTATCTTTCAAGCGCAGCTGCTACTATTG
CATCAGCGATTGGTGCCATGGAGAAGGCTAGTATGCCATCCGCATCCCCT
GTGACTGGTGGAACAGGCAGCAGCGACGGAGAGTGCCGGGATGAAGAAAA
TGACGACGGCTTTGTGGTGGTCACAAAGACCAAGCATACCAGCAACACTG
CTGCTGCCGGAAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAATCGG
CAGCGACAGCAGCGCCAACAGCTGTCGTCATCCTCTCTCATCGCAAACCG
AACAATCAGTCCTCCTATCAACAAGCTGAATGGTACAGCTACGGCTTATG
TGCCTCACGGTGGAGGAGGAGTGGGGGGGTGGGGGTCATACCGGTCAAAA
ACATGA
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Synonyms
Publications