NO15G01870.1, NO15G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01870.1
Unique NameNO15G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1928
Alignment locationchr15:526462..529115 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:526462..529115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01870.1 vs.
Match: EWM22387.1 (uDENN [Nannochloropsis gaditana])

HSP 1 Score: 396.0 bits (1016), Expect = 1.300e-106
Identity = 216/389 (55.53%), Postives = 255/389 (65.55%), Query Frame = 0 
Query:    2 MAARERLCDFFAVVGPKEDDLENGIVQEAYSIDNLHRALEDVIVDICIVNHPKDAIPFDGNYELLLKPGQANEDTAEG--------------------------EVKLVHKGQETLPEGFELIEKTVGGTPADLGKGDSQQLFLAVRRALIDGAAVCFSAPPMLA-----------------------LTKLGLPAEDIYLAFRHGPSAGLCDIPYTAHSLDWFPHEETHEDFPLPMDELPMFCFPRGVVLKHQKRNNTPMPSYFSFVFTSIEGDRVHVTCLQFYELLPDRVLHSLKAKQHNLTAIGSFSPHSAQAGGAGGGTDMGRIWDDDEESVTSSLDEEN----EGITMVKGAGTTGATGSQKVHHHKHHH--RCGSTNHAGQMS 336
            M+A ERLCD+FAVVGPKE DLEN +VQE YSI NLHRALE+ IVDICIVNHP++ IPF+ NYELLLKP Q  E   EG                          EV+LV K QE+ P+GFELIEKTVGG   DL +G SQQ++LAVR A +D  +  FS PP+LA                       L++LGLP E+IYLA++ GPSAGLCDIPY A+SLDWFPHE T+EDFPLP +ELPMFCFP+GVVLKHQKRN+TPMPSYFSFVFTSI+GDRVHV CLQFYELLPDRVL +L+AKQ  LT +G+F+        +GG   +G  WD DEESV SS+DEE     E ++   G      TG  K          R  +TNH G +S
Sbjct:    1 MSANERLCDYFAVVGPKEADLENRVVQEDYSIGNLHRALEEAIVDICIVNHPREVIPFEKNYELLLKPEQVEEGLGEGGKLQLAKHRYICFRRRKHRRTTSYITEVRLVCKSQESPPQGFELIEKTVGGASGDLSRGGSQQVYLAVRYAHVDETSFRFSIPPVLADLCLCSDEKGGSAPMEYTVLPRPLSRLGLPNENIYLAYQQGPSAGLCDIPYEAYSLDWFPHEATYEDFPLPQNELPMFCFPKGVVLKHQKRNDTPMPSYFSFVFTSIDGDRVHVACLQFYELLPDRVLRALEAKQRILTVLGAFA-SGENPTESGGPISLGE-WDSDEESVASSVDEEEEESVEAVSSTSGQAAGVETGIPKSSPSTQQSPGRRAATNHNGLIS 387
The following BLAST results are available for this feature:
BLAST of NO15G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22387.11.300e-10655.53uDENN [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01870NO15G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01870.1NO15G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01870.1.cds1NO15G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01870.1.cds2NO15G01870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01870.1.cds3NO15G01870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01870.1.cds4NO15G01870.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01870.1.cds5NO15G01870.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01870.1 ID=NO15G01870.1|Name=NO15G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp
TATCCACCTGTCTGTGCTGCCTCTTTATACGTGTGTGAGAAATGGATGGG
GTTGAAAACGTGAAGACGGAAAGCCACCACGAGGGAGGGGAGGTGAAGCA
GCTTCGCTGAAGGAGGCGAGCGATTCGAGGGTGGTCAAGACGCCCAACGG
TCCACGCCAAATTCTAGTCCGTGCTTTACTCGGTGATCTACAGAACAACC
TGTTCTTACGGACAAATAATATCACATCCAGCAGGTATTCTTCTCTCTTG
ATGTTATCCTTGGCGGCGGTGGTGGGACGATAGCGGTCCCTTGCGAATCG
TCCATGATGGGCCACGCTTACCGTTTTGGGTGCAGGAATCGTCTGGTCTG
CCCTTTTCCACCCTGATCACCGCGCTCGGGATGATCTGGGCAATGATCGA
CGACTTGAGATCACGCGCATATATATCATGCAAGCGGTGCTCATTTGTGG
GTGCGGGTCATGTGTCTGGCCGAACTGGCCAGGTTTGCACTTGGCCCATG
ATGGCAAGGTGAAAGAGAGATGTTGTCCAACACGCCAGGTCGCCGCTTCC
AGAGCGAGTCATCATTGTATATGCCATAACCTTGCATGTCATAATGGAAT
CAGTAGCAGCGTGGAACCAACCTGGGAATCAATCTGACTGCTATCCTCCA
TCACTAAGCTGGTTCGCCGCTCTATCTACCGCGACGGCACTAGGCGGACG
TGCCTCTCTCTTTCGGCTGCGTGGACAGGCGCGCCTGAGAGCTCTCGTCT
TACCTTACTTTTATCCACATCCACGCACTTTCTCCTGCATACTTTGAATG
ATGGCGGCCCGAGAACGACTTTGTGACTTCTTTGCAGTGGTGGGACCCAA
GGAGGACGATCTGGAAAATGGAATTGTTCAAGAAGCCTACTCCATTGACA
ATCTTCATCGCGCTTTGGAAGATGTCATCGTCGACATCTGTATCGTCAAC
CATCCCAAGGACGCCATTCCCTTTGATGGCAACTACGAGCTCCTCCTCAA
ACCCGGGCAAGCCAATGAAGACACTGCCGAAGGCGAGGTCAAGCTCGTGC
ACAAGGGTCAAGAAACTCTGCCGGAAGGCTTTGAACTGATCGAAAAGACT
GTCGGTGGCACCCCAGCGGATCTAGGCAAGGGCGATTCCCAGCAACTCTT
CCTGGCCGTGCGTCGCGCCCTCATCGATGGAGCAGCCGTCTGCTTCTCTG
CCCCGCCCATGCTGGCCCTGACCAAGTTGGGTCTTCCGGCCGAGGACATA
TATTTGGCCTTTCGTCATGGTCCCTCTGCTGGACTTTGCGATATCCCTTA
CACAGCGCATTCCCTGGACTGGTTCCCGCATGAAGAGACCCATGAGGATT
TTCCTCTGCCAATGGACGAGCTTCCTATGTTCTGCTTCCCTCGCGGCGTT
GTCCTTAAGCACCAAAAGCGCAATAACACACCCATGCCCTCATATTTCTC
CTTTGTCTTCACCTCTATCGAAGGCGATCGCGTACATGTGACCTGCCTTC
AATTTTATGAACTCCTTCCGGATCGTGTTTTGCACTCACTAAAAGCCAAG
CAGCACAATTTAACCGCGATTGGCTCTTTTTCTCCGCATTCCGCCCAGGC
GGGAGGAGCTGGTGGAGGCACCGATATGGGTAGGATATGGGACGATGATG
AAGAATCAGTGACAAGTAGTTTGGACGAGGAGAATGAGGGGATCACAATG
GTAAAAGGCGCGGGGACTACCGGCGCGACAGGGTCCCAGAAAGTCCACCA
CCATAAACACCACCATCGCTGTGGCTCGACGAACCATGCTGGACAAATGT
CGAGTATTCCCATCTGCACAGATAACGGCGCCTGCACGCCCTTGTCCGAG
AGAGACATGATAAAGCTTGCATCGACATCAGCACGCCCTAAATATCCATC
TGGACTTGGGCCTCAACGATCGTGTTGA
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protein sequence of NO15G01870.1

>NO15G01870.1-protein ID=NO15G01870.1-protein|Name=NO15G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MMAARERLCDFFAVVGPKEDDLENGIVQEAYSIDNLHRALEDVIVDICIV
NHPKDAIPFDGNYELLLKPGQANEDTAEGEVKLVHKGQETLPEGFELIEK
TVGGTPADLGKGDSQQLFLAVRRALIDGAAVCFSAPPMLALTKLGLPAED
IYLAFRHGPSAGLCDIPYTAHSLDWFPHEETHEDFPLPMDELPMFCFPRG
VVLKHQKRNNTPMPSYFSFVFTSIEGDRVHVTCLQFYELLPDRVLHSLKA
KQHNLTAIGSFSPHSAQAGGAGGGTDMGRIWDDDEESVTSSLDEENEGIT
MVKGAGTTGATGSQKVHHHKHHHRCGSTNHAGQMSSIPICTDNGACTPLS
ERDMIKLASTSARPKYPSGLGPQRSC*
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mRNA from alignment at chr15:526462..529115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01870.1 ID=NO15G01870.1|Name=NO15G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2654bp|location=Sequence derived from alignment at chr15:526462..529115- (Nannochloropsis oceanica)
TATCCACCTGTCTGTGCTGCCTCTTTATACGTGTGTGAGAAATGGATGGG
GTTGAAAACGTGAAGACGGAAAGCCACCACGAGGGAGGGGAGGTGAAGCA
GCTTCGCTGAAGGAGGCGAGCGATTCGAGGGTGGTCAAGACGCCCAACGG
TCCACGCCAAATTCTAGTCCGTGCTTTACTCGGTGATCTACAGAACAACC
TGTTCTTACGGACAAATAATATCACATCCAGCAGGTATTCTTCTCTCTTG
ATGTTATCCTTGGCGGCGGTGGTGGGACGATAGCGGTCCCTTGCGAATCG
TCCATGATGGGCCACGCTTACCGTTTTGGGTGCAGGAATCGTCTGGTCTG
CCCTTTTCCACCCTGATCACCGCGCTCGGGATGATCTGGGCAATGATCGA
CGACTTGAGATCACGCGCATATATATCATGCAAGCGGTGCTCATTTGTGG
GTGCGGGTCATGTGTCTGGCCGAACTGGCCAGGTTTGCACTTGGCCCATG
ATGGCAAGGTGAAAGAGAGATGTTGTCCAACACGCCAGGTCGCCGCTTCC
AGAGCGAGTCATCATTGTATATGCCATAACCTTGCATGTCATAATGGAAT
CAGTAGCAGCGTGGAACCAACCTGGGTATGCTTGTCCTAGCAAGCTGTCT
GTTTTGCATATTCTTTTATCGTATTCCGTCGGTCCGCATTGCCGCAATCC
CTTGTATATATTCTGACATATCTTTCCTCATCGCACACGCAGGAATCAAT
CTGACTGCTATCCTCCATCACTAAGCTGGTTCGCCGCTCTATCTACCGCG
ACGGCACTAGGCGGACGTGCCTCTCTCTTTCGGCTGCGTGGACAGGCGCG
CCTGAGAGCTCTCGTCTTACCTTACTTTTATCCACATCCACGCACTTTCT
CCTGCATACTTTGAATGATGGCGGCCCGAGAACGACTTTGTGACTTCTTT
GCAGTGGTGGGACCCAAGGAGGACGATCTGGAAAATGGAATTGTTCAAGA
AGCCTACTCCATTGACAATCTTCATCGGTACGTGATGGGGGTAGAGGAAG
AGTACACAACATCTGTTGTCATAAGCCTATGGTACGAATATGTAGTATTT
TTCTTCACATTTTAATTTTCGTAATCCATTCCTACATCTTCGTCCGATCT
CTTGGTATCCCCTTCCTTGCTTTTGCCTGTAATGTACATCTACCTCAATC
ACTGAGATTTTTATTCTCCCTATCCCGTCTCTTCTCTCTCACCATACCCC
TACCATACTATCACAGCGCTTTGGAAGATGTCATCGTCGACATCTGTATC
GTCAACCATCCCAAGGACGCCATTCCCTTTGATGGCAACTACGAGCTCCT
CCTCAAACCCGGGCAAGCCAATGAAGACACTGCCGAAGGCGGTAAGCTCC
AACTCGCCAAGCACTCTTACATCTGCTTCCGACGCCGCAGGCACAACAGG
GTCCCATCCTATGTTACAGAGGTCAAGCTCGTGCACAAGGGTCAAGAAAC
TCTGCCGGAAGGCTTTGAACTGATCGAAAAGACTGTCGGTGGCACCCCAG
CGGATCTAGGCAAGGGCGATTCCCAGCAACTCTTCCTGGCCGTGCGTCGC
GCCCTCATCGATGGAGCAGCCGTCTGCTTCTCTGCCCCGCCCATGCTGGT
AGATTAATGCTTGTACAAGTACAAGCTGGGGTATGCCGCTTCGATGGATT
ACACGGTTCTACCCCAGGCCCTGACCAAGTTGGGTCTTCCGGCCGAGGAC
ATATATTTGGCCTTTCGTCATGGTCCCTCTGCTGGACTTTGCGATATCCC
TTACACAGCGCATTCCCTGGACTGGTTCCCGCATGAAGAGACCCATGAGG
ATTTTCCTCTGCCAATGGACGAGCTTCCTATGTTCTGCTTCCCTCGCGGC
GTTGTCCTTAAGCACCAAAAGCGCAATAACACACCCATGCCCTCATATTT
CTCCTTTGTCTTCACCTCTATCGAAGGCGATCGCGTACATGTGACCTGCC
TTCAATTTTATGAACTCCTTCCGGATCGTGTTTTGCACTCACTAAAAGCC
AAGCAGCACAATTTAACCGCGATTGGCTCTTTTTCTCCGCATTCCGCCCA
GGCGGGAGGAGCTGGTGGAGGCACCGATATGGGTAGGATATGGGACGATG
ATGAAGAATCAGTGACAAGTAGTTTGGACGAGGAGAATGAGGGGATCACA
ATGGTAAAAGGCGCGGGGACTACCGGCGCGACAGGGTCCCAGAAAGTCCA
CCACCATAAACACCACCATCGCTGTGGCTCGACGAACCATGCTGGACAAA
TGTCGAGTATTCCCATCTGCACAGATAACGGCGCCTGCACGCCCTTGTCC
GAGAGAGACATGATAAAGCTTGCATCGACATCAGGTGCGTCATCAACCGC
CTTCCAGAATACCACCTGTTCGGATCGGAATGTTCATGGGCTCTTTGCGC
CCAAGTGTATCTGCATCATCAGCCACTGCCTTTCTATCGCGCGTTACGCT
CGTTTCTGAAACAGATCTATCGCATTTCCTTGTCTCCTTCCTCCATCCCT
CTGGAGCGATATATCGCTTTCTTTACGCGTTACATCCCTCTTCCTCCTCC
CGGACAGCACGCCCTAAATATCCATCTGGACTTGGGCCTCAACGATCGTG
TTGA
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Coding sequence (CDS) from alignment at chr15:526462..529115-

>NO15G01870.1 ID=NO15G01870.1|Name=NO15G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr15:526462..529115- (Nannochloropsis oceanica)
ATGATGGCGGCCCGAGAACGACTTTGTGACTTCTTTGCAGTGGTGGGACC
CAAGGAGGACGATCTGGAAAATGGAATTGTTCAAGAAGCCTACTCCATTG
ACAATCTTCATCGCGCTTTGGAAGATGTCATCGTCGACATCTGTATCGTC
AACCATCCCAAGGACGCCATTCCCTTTGATGGCAACTACGAGCTCCTCCT
CAAACCCGGGCAAGCCAATGAAGACACTGCCGAAGGCGAGGTCAAGCTCG
TGCACAAGGGTCAAGAAACTCTGCCGGAAGGCTTTGAACTGATCGAAAAG
ACTGTCGGTGGCACCCCAGCGGATCTAGGCAAGGGCGATTCCCAGCAACT
CTTCCTGGCCGTGCGTCGCGCCCTCATCGATGGAGCAGCCGTCTGCTTCT
CTGCCCCGCCCATGCTGGCCCTGACCAAGTTGGGTCTTCCGGCCGAGGAC
ATATATTTGGCCTTTCGTCATGGTCCCTCTGCTGGACTTTGCGATATCCC
TTACACAGCGCATTCCCTGGACTGGTTCCCGCATGAAGAGACCCATGAGG
ATTTTCCTCTGCCAATGGACGAGCTTCCTATGTTCTGCTTCCCTCGCGGC
GTTGTCCTTAAGCACCAAAAGCGCAATAACACACCCATGCCCTCATATTT
CTCCTTTGTCTTCACCTCTATCGAAGGCGATCGCGTACATGTGACCTGCC
TTCAATTTTATGAACTCCTTCCGGATCGTGTTTTGCACTCACTAAAAGCC
AAGCAGCACAATTTAACCGCGATTGGCTCTTTTTCTCCGCATTCCGCCCA
GGCGGGAGGAGCTGGTGGAGGCACCGATATGGGTAGGATATGGGACGATG
ATGAAGAATCAGTGACAAGTAGTTTGGACGAGGAGAATGAGGGGATCACA
ATGGTAAAAGGCGCGGGGACTACCGGCGCGACAGGGTCCCAGAAAGTCCA
CCACCATAAACACCACCATCGCTGTGGCTCGACGAACCATGCTGGACAAA
TGTCGAGTATTCCCATCTGCACAGATAACGGCGCCTGCACGCCCTTGTCC
GAGAGAGACATGATAAAGCTTGCATCGACATCAGCACGCCCTAAATATCC
ATCTGGACTTGGGCCTCAACGATCGTGTTGA
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Synonyms
Publications