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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr15 | genome | chr15:490751..494237 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G01730.1 vs.
Match: EWM22438.1 (geranylgeranyl transferase type-2 subunit alpha [Nannochloropsis gaditana]) HSP 1 Score: 427.9 bits (1099), Expect = 3.600e-116 Identity = 235/412 (57.04%), Postives = 287/412 (69.66%), Query Frame = 0
Query: 32 MHGRRKAENQAALLARSEAEKEAARDKVHKYKQLVALALKQRREANDQNLTVTTRKELEEALALSAQLLRVNPDVYTLWNHRKEAIAASQVVRHELEGAYARETGGELENA-----LPPNSFLQTELSMIAECIQKNPKSYGAWHHRRWLLEHAFPCTASS--PSCSSATSP-----SQLVATLDKEVALCAQLLDVDERNFHCWNYRRWVVSQHPGRSATDEFEFSTARIYKNFSNYSAFHHRAAYLSGHLTESGQTLNPKVFLRQELDMVQQAFFTEPDDQTSWWYHQYLISLVL-------KEGGREGGEE---GGKEFVREVLEGEVEIIRGLAEEGEEERGAKGKGGGYRWAVLTLASLLRQLASSQGEEGEEGRGEVLRKESRGLFERLGRMDPDHAKRYENIVVS 422
MHGRRK E Q LARS+AEKEAA++KV KYKQL+ LAL+QR+E + T + L+ L LS+QLLR+NPDVYTLWNHRKE I AS V+R E EG + E E LPP SFLQTEL ++ +CI+KNPKSYGAWHHRRWLL+HAF + S+ P+ SS +P QL LD+E+ LCA+LLD+DERNFHCW+YRRWVVS+HP R+ DEFEFST+RI KNFSNYSAFHHRA+Y +L E+ L+P FL +ELDMVQQA FTEPDDQT+WWYHQ+LISL L KE G G +E G F + VLE EV+++R L EEGE E GGGYRWAVLTLA LL +LA + + EE LR ES+ L +RL +DPDHA RY++++ S
Sbjct: 1 MHGRRKDEYQRTHLARSQAEKEAAKNKVFKYKQLMELALQQRQEMRHCKEALVTGEALDNDLVLSSQLLRINPDVYTLWNHRKEMIVASGVLRQEAEGGETEKEECESEREGGKAPLPPGSFLQTELDLVIDCIRKNPKSYGAWHHRRWLLDHAFSLSPSAAPPNPSSPVAPLPALSRQLKPVLDQELFLCAKLLDLDERNFHCWSYRRWVVSKHPARTPRDEFEFSTSRILKNFSNYSAFHHRASYFWDYLREAHPNLDPPSFLERELDMVQQAVFTEPDDQTAWWYHQHLISLALAWDTEREKELGERGDQELTPRGVSFAQRVLEKEVKVLRELVEEGEAE------GGGYRWAVLTLADLLGKLARRKEGKSEEAS---LRAESQKLLKRLPALDPDHAGRYQDMLDS 403
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G01730.1 ID=NO15G01730.1|Name=NO15G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=3346bp CGTGTTTTGAAAAGGCATAATTGACGTAGAGATTTCTCTCTACGTTCCTT CTTACGACAAAATATGTTCTGTCGCTGTCAGTAATCGCCAGTCTGCCATT CATTTCTCATTTCAGTATTTCTTGTTTTGAGTTCATTCACAATATATTGC TTTCAACACGCCGGCACGACCGGCCTCTTCTCTTCCGCACACCATAACTC TCGTCATCTTATTCACGTCGAAACAGATTTTTGTTCATACTCTTCACCTT TTTCGCCGGCAACCCGGGAGCTGCGACCGGCTTGTAAGAGTACGCCACCA CTGCAGCATTCCCCACGTTTTGACCCAACGGCAAGCTCCGGTCTCCGCTA AAACGAAAATGAACCCCTGCCATAGTGCGACTCTCTTTAATTTCATATGA GGCAGCGCTGAAGGAAGGGTAGGCGCGAATCTTCCCCGGAACTTTCTCTG AGGTCAGTACAAAGGGCACCTCGTCTTTCCCAGCAATCGCCCTCAACACG GTGGCGGCTGCCTCTGCAGTGGCAGTGTGCCCCTGGGGATATTCAGGGTG GGGCGGTGTCATAATTTCACTCTCGAATGCCGGATCCGCCGGGAAGTCTG TCACATTATTGCCAACCTGAATCGAAGTCACGGGCCGCCAGCTGTTGTAA AAATATTTTGAGTCAAAAGCAGCAATGCGGGCGTCAGCCATCGCGGTGGC CATGCAGGCGTAGGCCTTGACGCTTTCGGCGAGGGTGAAGTTTTCAGCCA CTTGCTTGAGAACACCATACCAGGGCATCTCAATGTTTGCCCCGCTCCAG AAGTACACAGTTTCGGTTTGGTCCGCAGAGCGTGAAGTGGAATTTTTCGT GCCCACCTGCTTCACCTCTAGGTAACTCATTTTAAAGGCGAGCGAGTCCA AGGCTGGCGGTGCAGCAACACGAAATTGATCGCCCTTCTCTAAATTAAAA GGCTTGACCTGACCCCAGTGCGGCGTCAAGCCTGCCTTGAAGGCGGGAGG AGTGGGGCGCCACTTGCCCACCTCCTCCACCCCTTTGTACGGAGGCGGGG CGGGGCTAGAACCGTCCTTAGCGCGGTCATTTAGTAGCGCCCTAGTGAGG GTGGCGCTTCGGTCTGTGGGCACCGCTGCTGCTGCTTGCTGGGCATACAA CTCATTTACTCTATCAGTCACGTTGGGGAAGATAGAGAGGAGCACCGTTT TGCCCGCGCTCGCAACTGCCGCGACTGCCGCCGCCTGGGTCTCAGGCATT GCACCCTGGCCAATGCTGTCTCGGAAGGCCTGCCATTGTGCCGTGTGCAA GAGAGCACCATAGCGGCAAGCCGTGTTGGGGTCGATCTTATTACCGCGAA CCTGATCTTGCAGTACGTCGTTCCAGGCGGTCACCGGGTTGGCATTTGTC GTAGTTAAGAACCAATGGAGCAGGAGGAGAAGGACCGAAATATATCGCAT GGTTGGTCGATCTGTGTCACGGCGGTGAGGTGGGTGGGTCGGTGCAGTTG GTCCAAATTAGAAGGTGTCAGTGCGTGGTGGAGGGGGGAGGTCAAAAAAG AGGATCTTCCCCATTCGTCGGCCTCTTTTTGCGTGAAATTGAGGCAGAAC GGCCACGTAAAATACCAGCAGCCTGATCAATAAGCACCTTTTGAATTTTC TTGGACAAAAGCGCAAGGGAGTCACATGACGGTGGAACAAAATCATACCG CCAGGAGTTCGAGCCAAGCCGACGGTTCGCAACACAGCCCTTCCGTCCAA ACACGGACATGTCATCTTCCAAAGCTTATATTGGCCCGTCCAAGAGTCCT CTCATTCCATTTGCGACATTTAAATATGCGGAAACCCCTTTGAAAGAGTG TACACCGTTGACCAAGCCAAGCACCGAAGGTCCCAGCGATGACTCGAAGT CCTTCCCAATCTCACTTCCCCATCCTGATTGCTTACATCCAAGCCCTCCC ACACGTTCACGCACAGGCCAAGCGGACGATAATGCACGGCCGACGAAAGG CAGAGAACCAGGCTGCGCTCTTGGCCCGAAGCGAGGCAGAAAAAGAAGCC GCCAGGGACAAGGTCCATAAGTACAAGCAGCTTGTCGCCCTCGCCTTGAA GCAACGACGTGAGGCGAATGATCAAAACCTCACTGTCACAACGAGAAAGG AGTTGGAGGAGGCATTGGCCTTGTCGGCGCAGCTGTTGCGTGTAAATCCC GACGTGTACACATTATGGAATCATCGCAAGGAAGCCATAGCCGCCAGTCA AGTGGTGCGGCATGAGCTTGAAGGAGCATACGCGAGAGAAACGGGGGGAG AATTGGAAAATGCCTTGCCACCAAACTCCTTTCTACAGACAGAGTTAAGC ATGATAGCAGAGTGCATTCAAAAGAATCCGAAGTCCTACGGTGCATGGCA TCACCGCCGCTGGCTTCTGGAGCATGCCTTTCCTTGTACTGCTTCCTCAC CCTCTTGCTCCTCCGCTACTTCGCCTTCGCAACTTGTTGCCACACTTGAT AAAGAGGTAGCCTTGTGTGCGCAACTCTTGGACGTGGACGAACGAAATTT TCACTGTTGGAACTATCGACGGTGGGTGGTGAGTCAGCACCCTGGGCGGA GTGCCACGGACGAATTTGAGTTTTCAACGGCCAGGATCTATAAGAACTTC AGCAACTACTCGGCCTTCCATCACCGCGCGGCCTACCTTTCTGGTCACTT GACGGAATCTGGACAAACTTTAAACCCTAAAGTGTTCCTCAGGCAAGAAC TAGACATGGTACAGCAAGCGTTTTTCACGGAGCCGGACGATCAAACCTCC TGGTGGTACCACCAGTACTTAATCTCTCTCGTCCTGAAGGAGGGAGGGAG GGAGGGAGGGGAGGAGGGAGGGAAGGAGTTTGTCCGGGAGGTTTTGGAGG GGGAGGTGGAGATTATTAGGGGGCTGGCGGAGGAGGGGGAGGAGGAAAGA GGGGCAAAGGGGAAGGGAGGAGGGTATCGGTGGGCGGTGCTGACGTTGGC GTCCTTGTTGAGGCAGTTGGCATCGTCTCAGGGGGAGGAGGGGGAGGAAG GGAGAGGGGAGGTATTGCGGAAAGAGAGTAGAGGCCTGTTTGAACGATTG GGGAGAATGGATCCGGACCATGCGAAGAGGTATGAGAATATTGTGGTGAG CTCATTTTGAGGAGAGGAGGGAGGGGAGGGACGGAAGGATGCGGAGGGCA GAAAGATTTTGGCTGGTTCTTCTCAGGAGGATGCAAAGAGTAGAGGCTGG GTCATTGTACATGGTGGATGGATCTTAGGCGGCAAGTTAGCAGTCGCTAG AAGGAAGGAATTTAAGCAAACTGTTGGTTCACCTCCAGAGGCAAGG back to topprotein sequence of NO15G01730.1 >NO15G01730.1-protein ID=NO15G01730.1-protein|Name=NO15G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp MTRSPSQSHFPILIAYIQALPHVHAQAKRTIMHGRRKAENQAALLARSEA EKEAARDKVHKYKQLVALALKQRREANDQNLTVTTRKELEEALALSAQLL RVNPDVYTLWNHRKEAIAASQVVRHELEGAYARETGGELENALPPNSFLQ TELSMIAECIQKNPKSYGAWHHRRWLLEHAFPCTASSPSCSSATSPSQLV ATLDKEVALCAQLLDVDERNFHCWNYRRWVVSQHPGRSATDEFEFSTARI YKNFSNYSAFHHRAAYLSGHLTESGQTLNPKVFLRQELDMVQQAFFTEPD DQTSWWYHQYLISLVLKEGGREGGEEGGKEFVREVLEGEVEIIRGLAEEG EEERGAKGKGGGYRWAVLTLASLLRQLASSQGEEGEEGRGEVLRKESRGL FERLGRMDPDHAKRYENIVVSSF* back to topmRNA from alignment at chr15:490751..494237+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G01730.1 ID=NO15G01730.1|Name=NO15G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=3487bp|location=Sequence derived from alignment at chr15:490751..494237+ (Nannochloropsis oceanica) CGTGTTTTGAAAAGGCATAATTGACGTAGAGATTTCTCTCTACGTTCCTT
CTTACGACAAAATATGTTCTGTCGCTGTCAGTAATCGCCAGTCTGCCATT
CATTTCTCATTTCAGTATTTCTTGTTTTGAGTTCATTCACAATATATTGC
TTTCAACACGCCGGCACGACCGGCCTCTTCTCTTCCGCACACCATAACTC
TCGTCATCTTATTCACGTCGAAACAGATTTTTGTTCATACTCTTCACCTT
TTTCGCCGGCAACCCGGGAGCTGCGACCGGCTTGTAAGAGTACGCCACCA
CTGCAGCATTCCCCACGTTTTGACCCAACGGCAAGCTCCGGTCTCCGCTA
AAACGAAAATGAACCCCTGCCATAGTGCGACTCTCTTTAATTTCATATGA
GGCAGCGCTGAAGGAAGGGTAGGCGCGAATCTTCCCCGGAACTTTCTCTG
AGGTCAGTACAAAGGGCACCTCGTCTTTCCCAGCAATCGCCCTCAACACG
GTGGCGGCTGCCTCTGCAGTGGCAGTGTGCCCCTGGGGATATTCAGGGTG
GGGCGGTGTCATAATTTCACTCTCGAATGCCGGATCCGCCGGGAAGTCTG
TCACATTATTGCCAACCTGAATCGAAGTCACGGGCCGCCAGCTGTTGTAA
AAATATTTTGAGTCAAAAGCAGCAATGCGGGCGTCAGCCATCGCGGTGGC
CATGCAGGCGTAGGCCTTGACGCTTTCGGCGAGGGTGAAGTTTTCAGCCA
CTTGCTTGAGAACACCATACCAGGGCATCTCAATGTTTGCCCCGCTCCAG
AAGTACACAGTTTCGGTTTGGTCCGCAGAGCGTGAAGTGGAATTTTTCGT
GCCCACCTGCTTCACCTCTAGGTAACTCATTTTAAAGGCGAGCGAGTCCA
AGGCTGGCGGTGCAGCAACACGAAATTGATCGCCCTTCTCTAAATTAAAA
GGCTTGACCTGACCCCAGTGCGGCGTCAAGCCTGCCTTGAAGGCGGGAGG
AGTGGGGCGCCACTTGCCCACCTCCTCCACCCCTTTGTACGGAGGCGGGG
CGGGGCTAGAACCGTCCTTAGCGCGGTCATTTAGTAGCGCCCTAGTGAGG
GTGGCGCTTCGGTCTGTGGGCACCGCTGCTGCTGCTTGCTGGGCATACAA
CTCATTTACTCTATCAGTCACGTTGGGGAAGATAGAGAGGAGCACCGTTT
TGCCCGCGCTCGCAACTGCCGCGACTGCCGCCGCCTGGGTCTCAGGCATT
GCACCCTGGCCAATGCTGTCTCGGAAGGCCTGCCATTGTGCCGTGTGCAA
GAGAGCACCATAGCGGCAAGCCGTGTTGGGGTCGATCTTATTACCGCGAA
CCTGATCTTGCAGTACGTCGTTCCAGGCGGTCACCGGGTTGGCATTTGTC
GTAGTTAAGAACCAATGGAGCAGGAGGAGAAGGACCGAAATATATCGCAT
GGTTGGTCGATCTGTGTCACGGCGGTGAGGTGGGTGGGTCGGTGCAGTTG
GTCCAAATTAGAAGGTGTCAGTGCGTGGTGGAGGGGGGAGGTCAAAAAAG
AGGATCTTCCCCATTCGTCGGCCTCTTTTTGCGTGAAATTGAGGCAGAAC
GGCCACGTAAAATACCAGCAGCCTGATCAATAAGCACCTTTTGAATTTTC
TTGGACAAAAGCGCAAGGGAGTCACATGACGGTGGAACAAAATCATACCG
CCAGGAGTTCGAGCCAAGCCGACGGTTCGCAACACAGCCCTTCCGTCCAA
ACACGGACATGTCATCTTCCAAAGCTTATATTGGCCCGTCCAAGAGTCCT
CTCATTCCATTTGCGACATTTAAATATGCGGAAACCCCTTTGAAAGAGTG
TACACCGTTGACCAAGCCAAGCACCGAAGGTCCCAGCGATGACTCGAAGT
CCTTCCCAATCTCACTTCCCCATCCTGATTGCTTACATCCAAGCCCTCCC
ACACGTTCACGCACAGGCCAAGCGGACGATAATGCACGGCCGACGAAAGG
CAGAGAACCAGGCTGCGCTCTTGGCCCGAAGCGAGGCAGAAAAAGAAGCC
GCCAGGGACAAGGTCCATAAGTACAAGCAGCTTGTCGCCCTCGCCTTGAA
GCAACGACGTGAGGCGAATGATCAAAACCTCACTGTCACAACGAGAAAGG
AGTTGGAGGAGGCATTGGCCTTGTCGGCGCAGCTGTTGCGTGTAAATCCC
GACGTGTACACATTATGGAATCATCGCAAGGAAGCCATAGCCGCCAGTCA
AGTGGTGCGGCATGAGCTTGAAGGAGCATACGCGAGAGAAACGGGGGGAG
AATTGGAAAATGCCTTGCCACCAAACTCCTTTCTACAGACAGAGTTAAGC
ATGATAGCAGAGTGCATTCAAAAGAATCCGAAGTCCTACGGTGCATGGCA
TCACCGCCGCTGGCTTCTGGAGCATGCCTTTCCTTGTACTGCTTCCTCAC
CCTCTTGCTCCTCCGCTACTTCGCCTTCGCAACTTGTTGCCACACTTGAT
AAAGAGGTAGCCTTGTGTGCGCAACTCTTGGACGTGGACGAACGAAATTT
TCACTGTTGGAACTATCGACGGTGGGTGGTGAGTCAGCACCCTGGGCGGA
GTGCCACGGACGAATTTGAGTTTTCAACGGCCAGGATCTATAAGAACTTC
AGGTCAGTGACAGAAGGGGGGAAGTAAAGAATGTGTGATTTAACGCAATC
TAGTGGACTGCATGGGAAAATACATTTTTATTGATTCGTAACATGGAAAC
CCGATACATTTTCCTCTCTCTCCCTCTCTCCCTCCTTCCCTAGCAACTAC
TCGGCCTTCCATCACCGCGCGGCCTACCTTTCTGGTCACTTGACGGAATC
TGGACAAACTTTAAACCCTAAAGTGTTCCTCAGGCAAGAACTAGACATGG
TACAGCAAGCGTTTTTCACGGAGCCGGACGATCAAACCTCCTGGTGGTAC
CACCAGTACTTAATCTCTCTCGTCCTGAAGGAGGGAGGGAGGGAGGGAGG
GGAGGAGGGAGGGAAGGAGTTTGTCCGGGAGGTTTTGGAGGGGGAGGTGG
AGATTATTAGGGGGCTGGCGGAGGAGGGGGAGGAGGAAAGAGGGGCAAAG
GGGAAGGGAGGAGGGTATCGGTGGGCGGTGCTGACGTTGGCGTCCTTGTT
GAGGCAGTTGGCATCGTCTCAGGGGGAGGAGGGGGAGGAAGGGAGAGGGG
AGGTATTGCGGAAAGAGAGTAGAGGCCTGTTTGAACGATTGGGGAGAATG
GATCCGGACCATGCGAAGAGGTATGAGAATATTGTGGTGAGCTCATTTTG
AGGAGAGGAGGGAGGGGAGGGACGGAAGGATGCGGAGGGCAGAAAGATTT
TGGCTGGTTCTTCTCAGGAGGATGCAAAGAGTAGAGGCTGGGTCATTGTA
CATGGTGGATGGATCTTAGGCGGCAAGTTAGCAGTCGCTAGAAGGAAGGA
ATTTAAGCAAACTGTTGGTTCACCTCCAGAGGCAAGG back to topCoding sequence (CDS) from alignment at chr15:490751..494237+ >NO15G01730.1 ID=NO15G01730.1|Name=NO15G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at chr15:490751..494237+ (Nannochloropsis oceanica) ATGACTCGAAGTCCTTCCCAATCTCACTTCCCCATCCTGATTGCTTACAT CCAAGCCCTCCCACACGTTCACGCACAGGCCAAGCGGACGATAATGCACG GCCGACGAAAGGCAGAGAACCAGGCTGCGCTCTTGGCCCGAAGCGAGGCA GAAAAAGAAGCCGCCAGGGACAAGGTCCATAAGTACAAGCAGCTTGTCGC CCTCGCCTTGAAGCAACGACGTGAGGCGAATGATCAAAACCTCACTGTCA CAACGAGAAAGGAGTTGGAGGAGGCATTGGCCTTGTCGGCGCAGCTGTTG CGTGTAAATCCCGACGTGTACACATTATGGAATCATCGCAAGGAAGCCAT AGCCGCCAGTCAAGTGGTGCGGCATGAGCTTGAAGGAGCATACGCGAGAG AAACGGGGGGAGAATTGGAAAATGCCTTGCCACCAAACTCCTTTCTACAG ACAGAGTTAAGCATGATAGCAGAGTGCATTCAAAAGAATCCGAAGTCCTA CGGTGCATGGCATCACCGCCGCTGGCTTCTGGAGCATGCCTTTCCTTGTA CTGCTTCCTCACCCTCTTGCTCCTCCGCTACTTCGCCTTCGCAACTTGTT GCCACACTTGATAAAGAGGTAGCCTTGTGTGCGCAACTCTTGGACGTGGA CGAACGAAATTTTCACTGTTGGAACTATCGACGGTGGGTGGTGAGTCAGC ACCCTGGGCGGAGTGCCACGGACGAATTTGAGTTTTCAACGGCCAGGATC TATAAGAACTTCAGCAACTACTCGGCCTTCCATCACCGCGCGGCCTACCT TTCTGGTCACTTGACGGAATCTGGACAAACTTTAAACCCTAAAGTGTTCC TCAGGCAAGAACTAGACATGGTACAGCAAGCGTTTTTCACGGAGCCGGAC GATCAAACCTCCTGGTGGTACCACCAGTACTTAATCTCTCTCGTCCTGAA GGAGGGAGGGAGGGAGGGAGGGGAGGAGGGAGGGAAGGAGTTTGTCCGGG AGGTTTTGGAGGGGGAGGTGGAGATTATTAGGGGGCTGGCGGAGGAGGGG GAGGAGGAAAGAGGGGCAAAGGGGAAGGGAGGAGGGTATCGGTGGGCGGT GCTGACGTTGGCGTCCTTGTTGAGGCAGTTGGCATCGTCTCAGGGGGAGG AGGGGGAGGAAGGGAGAGGGGAGGTATTGCGGAAAGAGAGTAGAGGCCTG TTTGAACGATTGGGGAGAATGGATCCGGACCATGCGAAGAGGTATGAGAA TATTGTGGTGAGCTCATTTTGA back to top
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