NO15G01580.1, NO15G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01580.1
Unique NameNO15G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1587
Alignment locationchr15:444601..446187 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:444601..446187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01580.1 vs.
Match: EWM22464.1 (SGF29 tudor-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 588.6 bits (1516), Expect = 2.000e-164
Identity = 317/410 (77.32%), Postives = 345/410 (84.15%), Query Frame = 0 
Query:  107 LASSMTTTSLPPVAPPTTTTASNSNSTGYNRPGLPCFRKLEPRVLLKYLEHHGLTAKADATTEELAMLVSRHFEREPVDEDVVLHSFFMSGMQATNTLGKFEKKRKRGGGAGGAHYASHHYGGGSGYAPVHRKEGGRG-GGGGEGGGGNGSVATVDEEVAARLSCQLVEDSTAGWILARIIKYVPERDTYQVRDEDDHANVQTLPSTNVIRLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGMGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGLGREGTGDGGYEGVGGGGKKGSIKDYKIMISHALQKLPNSKGTLKEIFKIIENEFRDELHWKIEGGGGDGGKKAPIWKQQVRKLLTNPRSGFMFINAGGGERGSQVYSESGGGGG 516
            +A+    ++  P AP T  + S  +S G +R G   FRKLEPRVLLKYLEHHGLTAK DA+ +ELA LV+RHF REPVDE+VVLHSFFMSGMQATN LGKFEKKRKRG G  GAHYASHHYGGGSGYAP  RKE GRG G GG  GGG+G++A +DEEVAARL  Q++EDSTAGWILAR+I+Y PERDTYQVRDEDDHANVQ LPS NVI LHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGG+GPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANG+GR+G   G      GGG+KG ++DYKIMISHALQKLPNSKGTLKEIFKIIEN+FRDEL WK+EG     GKK PIWK QVRKLL NPRSGFMFINA GGERGSQ Y+  GG GG
Sbjct:   83 IATEGPPSASAPTAPATGLSESIGSSPG-SRLGSQTFRKLEPRVLLKYLEHHGLTAKPDASVDELAALVARHFSREPVDEEVVLHSFFMSGMQATNVLGKFEKKRKRGSGGVGAHYASHHYGGGSGYAPAPRKEAGRGLGAGGAAGGGSGAIAKMDEEVAARLPNQMMEDSTAGWILARVIQYAPERDTYQVRDEDDHANVQVLPSANVICLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDYG-----DGGGRKG-MRDYKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEG----DGKKGPIWKSQVRKLLVNPRSGFMFINA-GGERGSQYYAAGGGSGG 480
The following BLAST results are available for this feature:
BLAST of NO15G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22464.12.000e-16477.32SGF29 tudor-like domain protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01580NO15G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01580.1NO15G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01580.1.cds1NO15G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01580.1 ID=NO15G01580.1|Name=NO15G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp
ATGGAGGAAGGACAACAGGCGTACGAGCCGATCCCGGAGACCGCGCGGGA
GCCCTCTGGCGCCCATGCTGGACAACAAGACCTCCTGCCCCACACGACCA
TGCCGCCACTCGGCAACGGCACCAGCACCAGCACTACCAACAGCAGCACA
GCCTCTGTCGACATGCACGGAGCCTACAATCCGATGCCTATGGAAACGAG
CGCAGCTGCTGCTGACAACTGCGTCAGCGGGGAGCATGAGACGTCACCGG
CTGTCGTTGACGCTCCTGCTGCTGCTGCTGCTGCCGCCGCTCCGGGCATG
TCCGCAGAGGCGGTTCTCCTAGCTTCGAGCATGACGACGACTAGTCTGCC
TCCCGTCGCCCCCCCTACTACCACCACCGCTAGCAATAGCAATAGCACGG
GTTACAATCGGCCGGGTCTGCCATGCTTTCGCAAGCTGGAGCCGCGTGTC
TTGCTCAAGTACCTGGAACACCACGGGCTGACTGCAAAGGCGGATGCGAC
TACCGAGGAGCTGGCCATGCTGGTCTCACGGCACTTCGAACGCGAACCTG
TCGATGAAGATGTGGTCCTACATTCCTTTTTCATGTCGGGGATGCAGGCT
ACGAATACCCTGGGCAAGTTTGAAAAGAAGCGGAAGCGTGGGGGAGGCGC
AGGCGGGGCCCATTATGCTTCCCACCACTATGGAGGAGGATCAGGCTACG
CTCCCGTCCATCGGAAGGAAGGCGGCCGTGGAGGAGGAGGAGGAGAAGGA
GGGGGAGGAAATGGATCAGTGGCCACGGTGGATGAGGAAGTCGCGGCGCG
TTTGTCTTGCCAGCTGGTGGAGGATAGTACTGCTGGATGGATTCTGGCAC
GTATCATTAAATATGTGCCGGAGCGAGATACGTACCAAGTGCGAGATGAA
GACGACCATGCAAATGTGCAGACGCTACCGTCGACGAATGTTATCCGGCT
GCACGAAGAGAATTTGTTGGATGTCCAAAAGAACGATACCGTCCTGGCCG
TCTTTCCCGACACGACGAGTTTCTACCGCGCCCAGGTCACGAAGGTACCG
AAGCGCGCACAGGGAGGGATGGGGCCCTTGGAGGTGATGGTCAAATTTGA
GGACGACGAGGACGAGACGGGCCGCACTCCTCATCGACGGGTCCCGGCCA
GGCACGTGCTGAAGCTATCCCAGGTAGGGAGGTTCGAGGCGGCCAATGGA
TTGGGGAGGGAGGGAACGGGGGACGGAGGGTATGAAGGGGTGGGAGGGGG
GGGGAAGAAGGGGTCGATCAAGGATTATAAGATCATGATTTCGCATGCGC
TGCAGAAACTTCCGAATAGCAAGGGGACGTTGAAGGAGATTTTCAAGATC
ATCGAGAACGAGTTTAGGGATGAGTTGCATTGGAAGATAGAGGGAGGGGG
AGGAGATGGGGGGAAAAAGGCCCCGATCTGGAAGCAGCAGGTGAGGAAAT
TGTTGACGAATCCGCGGTCGGGTTTTATGTTCATCAATGCGGGAGGGGGG
GAGAGGGGGTCGCAGGTCTATTCTGAAAGTGGTGGGGGAGGGGGGGGAGG
GGTGGGGGGAGGGAGTAGCAGTTTCCATAGCTCGTGA
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protein sequence of NO15G01580.1

>NO15G01580.1-protein ID=NO15G01580.1-protein|Name=NO15G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MEEGQQAYEPIPETAREPSGAHAGQQDLLPHTTMPPLGNGTSTSTTNSST
ASVDMHGAYNPMPMETSAAAADNCVSGEHETSPAVVDAPAAAAAAAAPGM
SAEAVLLASSMTTTSLPPVAPPTTTTASNSNSTGYNRPGLPCFRKLEPRV
LLKYLEHHGLTAKADATTEELAMLVSRHFEREPVDEDVVLHSFFMSGMQA
TNTLGKFEKKRKRGGGAGGAHYASHHYGGGSGYAPVHRKEGGRGGGGGEG
GGGNGSVATVDEEVAARLSCQLVEDSTAGWILARIIKYVPERDTYQVRDE
DDHANVQTLPSTNVIRLHEENLLDVQKNDTVLAVFPDTTSFYRAQVTKVP
KRAQGGMGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANG
LGREGTGDGGYEGVGGGGKKGSIKDYKIMISHALQKLPNSKGTLKEIFKI
IENEFRDELHWKIEGGGGDGGKKAPIWKQQVRKLLTNPRSGFMFINAGGG
ERGSQVYSESGGGGGGGVGGGSSSFHSS*
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mRNA from alignment at chr15:444601..446187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01580.1 ID=NO15G01580.1|Name=NO15G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp|location=Sequence derived from alignment at chr15:444601..446187+ (Nannochloropsis oceanica)
ATGGAGGAAGGACAACAGGCGTACGAGCCGATCCCGGAGACCGCGCGGGA
GCCCTCTGGCGCCCATGCTGGACAACAAGACCTCCTGCCCCACACGACCA
TGCCGCCACTCGGCAACGGCACCAGCACCAGCACTACCAACAGCAGCACA
GCCTCTGTCGACATGCACGGAGCCTACAATCCGATGCCTATGGAAACGAG
CGCAGCTGCTGCTGACAACTGCGTCAGCGGGGAGCATGAGACGTCACCGG
CTGTCGTTGACGCTCCTGCTGCTGCTGCTGCTGCCGCCGCTCCGGGCATG
TCCGCAGAGGCGGTTCTCCTAGCTTCGAGCATGACGACGACTAGTCTGCC
TCCCGTCGCCCCCCCTACTACCACCACCGCTAGCAATAGCAATAGCACGG
GTTACAATCGGCCGGGTCTGCCATGCTTTCGCAAGCTGGAGCCGCGTGTC
TTGCTCAAGTACCTGGAACACCACGGGCTGACTGCAAAGGCGGATGCGAC
TACCGAGGAGCTGGCCATGCTGGTCTCACGGCACTTCGAACGCGAACCTG
TCGATGAAGATGTGGTCCTACATTCCTTTTTCATGTCGGGGATGCAGGCT
ACGAATACCCTGGGCAAGTTTGAAAAGAAGCGGAAGCGTGGGGGAGGCGC
AGGCGGGGCCCATTATGCTTCCCACCACTATGGAGGAGGATCAGGCTACG
CTCCCGTCCATCGGAAGGAAGGCGGCCGTGGAGGAGGAGGAGGAGAAGGA
GGGGGAGGAAATGGATCAGTGGCCACGGTGGATGAGGAAGTCGCGGCGCG
TTTGTCTTGCCAGCTGGTGGAGGATAGTACTGCTGGATGGATTCTGGCAC
GTATCATTAAATATGTGCCGGAGCGAGATACGTACCAAGTGCGAGATGAA
GACGACCATGCAAATGTGCAGACGCTACCGTCGACGAATGTTATCCGGCT
GCACGAAGAGAATTTGTTGGATGTCCAAAAGAACGATACCGTCCTGGCCG
TCTTTCCCGACACGACGAGTTTCTACCGCGCCCAGGTCACGAAGGTACCG
AAGCGCGCACAGGGAGGGATGGGGCCCTTGGAGGTGATGGTCAAATTTGA
GGACGACGAGGACGAGACGGGCCGCACTCCTCATCGACGGGTCCCGGCCA
GGCACGTGCTGAAGCTATCCCAGGTAGGGAGGTTCGAGGCGGCCAATGGA
TTGGGGAGGGAGGGAACGGGGGACGGAGGGTATGAAGGGGTGGGAGGGGG
GGGGAAGAAGGGGTCGATCAAGGATTATAAGATCATGATTTCGCATGCGC
TGCAGAAACTTCCGAATAGCAAGGGGACGTTGAAGGAGATTTTCAAGATC
ATCGAGAACGAGTTTAGGGATGAGTTGCATTGGAAGATAGAGGGAGGGGG
AGGAGATGGGGGGAAAAAGGCCCCGATCTGGAAGCAGCAGGTGAGGAAAT
TGTTGACGAATCCGCGGTCGGGTTTTATGTTCATCAATGCGGGAGGGGGG
GAGAGGGGGTCGCAGGTCTATTCTGAAAGTGGTGGGGGAGGGGGGGGAGG
GGTGGGGGGAGGGAGTAGCAGTTTCCATAGCTCGTGA
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Coding sequence (CDS) from alignment at chr15:444601..446187+

>NO15G01580.1 ID=NO15G01580.1|Name=NO15G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at chr15:444601..446187+ (Nannochloropsis oceanica)
ATGGAGGAAGGACAACAGGCGTACGAGCCGATCCCGGAGACCGCGCGGGA
GCCCTCTGGCGCCCATGCTGGACAACAAGACCTCCTGCCCCACACGACCA
TGCCGCCACTCGGCAACGGCACCAGCACCAGCACTACCAACAGCAGCACA
GCCTCTGTCGACATGCACGGAGCCTACAATCCGATGCCTATGGAAACGAG
CGCAGCTGCTGCTGACAACTGCGTCAGCGGGGAGCATGAGACGTCACCGG
CTGTCGTTGACGCTCCTGCTGCTGCTGCTGCTGCCGCCGCTCCGGGCATG
TCCGCAGAGGCGGTTCTCCTAGCTTCGAGCATGACGACGACTAGTCTGCC
TCCCGTCGCCCCCCCTACTACCACCACCGCTAGCAATAGCAATAGCACGG
GTTACAATCGGCCGGGTCTGCCATGCTTTCGCAAGCTGGAGCCGCGTGTC
TTGCTCAAGTACCTGGAACACCACGGGCTGACTGCAAAGGCGGATGCGAC
TACCGAGGAGCTGGCCATGCTGGTCTCACGGCACTTCGAACGCGAACCTG
TCGATGAAGATGTGGTCCTACATTCCTTTTTCATGTCGGGGATGCAGGCT
ACGAATACCCTGGGCAAGTTTGAAAAGAAGCGGAAGCGTGGGGGAGGCGC
AGGCGGGGCCCATTATGCTTCCCACCACTATGGAGGAGGATCAGGCTACG
CTCCCGTCCATCGGAAGGAAGGCGGCCGTGGAGGAGGAGGAGGAGAAGGA
GGGGGAGGAAATGGATCAGTGGCCACGGTGGATGAGGAAGTCGCGGCGCG
TTTGTCTTGCCAGCTGGTGGAGGATAGTACTGCTGGATGGATTCTGGCAC
GTATCATTAAATATGTGCCGGAGCGAGATACGTACCAAGTGCGAGATGAA
GACGACCATGCAAATGTGCAGACGCTACCGTCGACGAATGTTATCCGGCT
GCACGAAGAGAATTTGTTGGATGTCCAAAAGAACGATACCGTCCTGGCCG
TCTTTCCCGACACGACGAGTTTCTACCGCGCCCAGGTCACGAAGGTACCG
AAGCGCGCACAGGGAGGGATGGGGCCCTTGGAGGTGATGGTCAAATTTGA
GGACGACGAGGACGAGACGGGCCGCACTCCTCATCGACGGGTCCCGGCCA
GGCACGTGCTGAAGCTATCCCAGGTAGGGAGGTTCGAGGCGGCCAATGGA
TTGGGGAGGGAGGGAACGGGGGACGGAGGGTATGAAGGGGTGGGAGGGGG
GGGGAAGAAGGGGTCGATCAAGGATTATAAGATCATGATTTCGCATGCGC
TGCAGAAACTTCCGAATAGCAAGGGGACGTTGAAGGAGATTTTCAAGATC
ATCGAGAACGAGTTTAGGGATGAGTTGCATTGGAAGATAGAGGGAGGGGG
AGGAGATGGGGGGAAAAAGGCCCCGATCTGGAAGCAGCAGGTGAGGAAAT
TGTTGACGAATCCGCGGTCGGGTTTTATGTTCATCAATGCGGGAGGGGGG
GAGAGGGGGTCGCAGGTCTATTCTGAAAGTGGTGGGGGAGGGGGGGGAGG
GGTGGGGGGAGGGAGTAGCAGTTTCCATAGCTCGTGA
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Synonyms
Publications