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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr15 | genome | chr15:330397..333884 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G01160.2 vs.
Match: EWM22461.1 (calcium binding protein 39 [Nannochloropsis gaditana]) HSP 1 Score: 555.1 bits (1429), Expect = 2.000e-154 Identity = 309/415 (74.46%), Postives = 333/415 (80.24%), Query Frame = 0
Query: 32 MPTGGSSFLQSLTKRKKSPETLVKLAVACLQELPASEDESWTCPTAEGVKPLTGALGGLSLDEAVNAKQPPKHVDSDDLSVSGQSISSS---------TASSGSDAAVSRRPSFFLSAFGKKESSSNSADPGSAAPHSQSSLGSSGESGAADTTTK------SGRPGSLLVSKFFSDSSRKPAPLSPHGSGLSQSASLGQTGAEDGTVMERLAKRLAQMKLVLYGDGEKEVDKDKCVDLAENIIKEGLMPLLLDRFTNLPFEARKDAAQIFNNIARHNHGGFADPYIADQHFSIMEQLINGYGHPEVALNCGSMLREAARHEKVARRVLFSPHIWAFFDTYVHLPNFDVASDSFATLRDLLTKHKAVAADFLEKEYDLVFSKYRSLLASDNYVTRRMSLKMLGEILLDRSNFNVM 432
MPTGGSSFL SLTKRKKSPE LVKLAVACL ELPA ED SWTCP +G K A+ GL+ E P K D+L+ S SISSS T+S+GSDA SRR SFFLSAFGKKE+ S+ D GSA P SS GSS + AAD +T S RP L VSKFFSDSSRKP LSP S SQ S+GQ+G E +VMERLAKRL+QMKLVLYGDGEKEVDKDKCVDLAENIIKEGLMPLLLDRFTNLPFEARKDAAQIFNNIARHNH GFADPYIAD HFSI+EQLI+GYGHPEVALNCGSMLREAARHEKVARR+LFSPH+W FFDT+VHLPNFDVASDSFATLRDLLTKHK VAA+FLE+EY+ VF KY+SLLASDNYVTRRMSLKMLGEILLDRSNFNVM
Sbjct: 1 MPTGGSSFLSSLTKRKKSPEQLVKLAVACLHELPAVEDASWTCPGVDGTKATVPAMDGLNRGE----PGPSKQQKQDELTSSRHSISSSAPSNPDASRTSSAGSDAGASRRSSFFLSAFGKKEAHSH--DSGSAPP-PHSSAGSSRDGSAADASTSGKVRGISIRPTGLSVSKFFSDSSRKPPILSPQESNWSQ-GSVGQSGIEGDSVMERLAKRLSQMKLVLYGDGEKEVDKDKCVDLAENIIKEGLMPLLLDRFTNLPFEARKDAAQIFNNIARHNHAGFADPYIADHHFSILEQLISGYGHPEVALNCGSMLREAARHEKVARRILFSPHVWPFFDTFVHLPNFDVASDSFATLRDLLTKHKTVAAEFLEEEYEQVFDKYKSLLASDNYVTRRMSLKMLGEILLDRSNFNVM 407
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G01160.2 ID=NO15G01160.2|Name=NO15G01160.2|organism=Nannochloropsis oceanica|type=mRNA|length=3399bp CCCCAACCCTGCTTCTATAACGATCAGGCAGCCCGTCCAATGCATCACCC ACACAGCGTACATAACCACGACCACACAAATATAAAGAGGCAATTAAGCA ACCAGCAGCAAGGCAATCTCTCGACGACAGCCATGCCAACCGGCGGCTCC AGTTTCCTGCAGAGCTTGACGAAGCGCAAGAAGTCACCCGAGACGCTCGT CAAACTGGCAGTAGCATGCCTGCAAGAATTACCCGCCTCGGAGGACGAGA GTTGGACTTGTCCCACGGCCGAGGGAGTTAAGCCACTCACTGGGGCTTTG GGAGGGCTCAGCCTCGACGAGGCGGTAAACGCCAAGCAGCCGCCAAAACA TGTGGACAGCGACGACCTAAGCGTTTCGGGGCAGTCCATCTCGTCATCCA CTGCCTCGAGTGGCAGCGACGCGGCCGTGTCTCGGCGGCCCAGCTTTTTC TTGAGCGCTTTTGGCAAGAAGGAGTCCTCTTCTAATTCGGCAGACCCTGG GTCGGCGGCGCCACACTCGCAATCCAGCCTGGGCTCCAGTGGGGAAAGCG GGGCGGCCGACACAACAACCAAATCTGGGCGGCCGGGTTCCCTTTTGGTG AGCAAGTTCTTCTCGGACTCAAGCCGGAAGCCTGCACCCCTGAGCCCGCA TGGGTCGGGGCTATCGCAATCGGCGAGCCTGGGTCAGACGGGTGCGGAGG ACGGCACGGTGATGGAGCGGCTGGCAAAGCGGCTGGCGCAGATGAAGCTG GTGCTGTACGGGGACGGCGAGAAGGAGGTAGACAAAGACAAGTGTGTGGA CCTGGCCGAAAATATTATCAAAGAAGGGCTCATGCCTTTGCTGCTGGACC GATTCACGAATCTACCGTTCGAGGCCCGCAAGGACGCGGCCCAGATTTTT AACAACATCGCCCGCCACAACCACGGAGGCTTCGCTGACCCCTACATCGC CGACCAGCACTTTTCAATCATGGAACAGCTCATCAATGGCTATGGCCACC CCGAGGTGGCTCTGAACTGTGGGTCGATGCTGCGGGAGGCGGCCCGGCAT GAAAAGGTGGCACGGCGGGTTCTGTTCTCGCCACACATCTGGGCATTTTT TGATACGTACGTGCACCTGCCAAACTTCGACGTGGCCTCGGACTCGTTCG CCACGCTGCGCGACCTACTGACCAAACACAAGGCCGTGGCAGCCGACTTC CTAGAGAAGGAGTACGACCTCGTCTTCAGCAAATATCGCAGCCTGCTCGC CTCCGACAACTACGTCACTCGCCGCATGTCCCTCAAGATGCTGGGCGAGA TCCTCCTCGATCGCTCGAATTTCAACGTCATGTAAGTTGTTTGTTATCGT GTTTTTTGGTACTTCAACTCAACTGCACTAGGTACTTGATTACCATCACT CGATCATCGACATGAACTAGACCGGAGGCGTTGACAGTCTTGATTTTGGC GTCAGGGAGGTTGCTGTTGGAGCAGCAATTAAAGCTACATAATTCACACA GACACTACGTGCAGACAGAGGCATGACTTCTGGGAGCCGATGCCGATTGT CTCACCACGACTCTCAATCTCCCTCTCCCTGTACTTCAGGATGCGATATA TCTCGTCGAAGGAGAATCTGAAGACGATCATGAATCTGCTGCGCGACAAG AGCGCATCCATCCAGTTCGAAGCCTTCCACGTGTTCAAGGTGTTTGTGGC CAACCCCAAAAAGCCTCCAGAGATAGTCAAGATCCTTGTCACGAATCGGG ACAAGCTCGTCAGCTACCTGACCCACTTCCACACTGACAAGGACGACGAC CAGTTTCGCGAGGAAAAGGCTCTACTTGTCAATACGCTCGCCAAGCTTGA GTACGAAGAGCCCCCCAAGTAGAAGGACAGCGGGACAAAGAGGAAGAGCG AGCGCGACAAAAAGCAGGGTTGCGGACGAGAGGTGTCGCCACACAGTAGC GACTCAAAGCAAGGTCAACGTCAGGATTTTGTAGGACCAAGAAAGGAAAA AGAAATGTCTTTGAGCGGAATATGTATCTCATTTAATTTGACGAGCTAGG GCGCGGTGGGGTGTCCACTCAAGCGAGTGAAAATAACACCCAACCTCACG GCTCTGCTTTGCCTACGAAAAATACATCGTCTTTTCTTTTGTTTCTGCCG GTCACTGCACTTCCTGTAATAGATGCTGCTGTATTTGTCGTTGGAGATCT GTGCCGTTGCGTACGTATAGGCTCGTGATTGCGCCGAAGCGTGTGCTGTG GGTCAAGGTAACCCGGAGCTCGTGGTCTAAGAAGGCCGTCTCTACAAAGG TCCCGTTGGGGTCGAACGCGTCGAAGGGCACCACCCGCTGCACGGCCCGG ATGAGTGCATCTGGGTTACGGGGGGCACGATTCATGCTCATATCGTGCTC CACCTCCCCCATTTCTAATAAGCCTCGGCTGTTGACCTCGTAGCTGCTGC GGACGACCAAGGCCCCCGCCAAGCCAGTATCCCCTTCCTCGCTCGCCGTG CACTCCCATTTAACTGTATTGATGATGCACCCTTTCGTCACGTTTGGAAT TAGTATTTGTTGAAAATCACTCAGCACCATCTGCGTGGCGGCCATCGGTG CAGGGCCTCCTAAGGCTGCCGCGGCCGCCCCTGCGGCCCAATCCTCCTCC TCAGCGGGACCCAAGAGATCCAGGAAATTGTCCTCGTCCTCCTCCTCTCT TTCATCCTCAGCAAGCAGGCTGCGCGCCTCTGCCACTTTACGCCGCACTG TCCAGGAATTGTATATGTTCAACCAACTGCCTTGCAGTAGCAAATTCATA AAGGGCAAGGTTTGAGGGGGCACGTACTTCTCCTTGAGCTGGCCCACGAC AAAGTCAATGCGCTGGGCGATGGATTCTTCCCTCCCTTCTCTGACATCCT CCGGCATGGTGACCAGAGTCAAAAGCTCCTCCCGGTGCTTGATGCTGGAC GAAAAGGCGGAGCTGGTGGGCGCGATAGCAAAGGCGGGGTCCGTGGTGGT GGATGCTGCTAGTACTTGGCACTTCCAGAGTCTGGGAATAAGAAAGGCAG ACGATCTACGGCAAATTCCTGGCAGCCCAACAATTAAGAGCATTCCCTTC CTAGCTTTGCTGCCAGCCCGGCAACGCATGCTTGGCAATCGACCCATCAA AGGCGCTATGTATGTAAGTGCGTGCGTAGGGATGCATGAGAAGGGGTAAC CATGGGTGACTTCAACGATTAGAGAGGCGGCTCTGGAGTATCTTTGCGTC CAGCCAGAGGCACAGGTCACGGCCGGGCTCACACTGCGATTTTAAGATGG GTCTTCCATGTGTTTCTCTCAGTAAGTGTTGACAATCAGAGTTAGCTGTG TGTCGCTTTGCGTGCAAGCAACAAAACCAGTCAAGCAAACCTCCCACAA back to topprotein sequence of NO15G01160.2 >NO15G01160.2-protein ID=NO15G01160.2-protein|Name=NO15G01160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp MHHPHSVHNHDHTNIKRQLSNQQQGNLSTTAMPTGGSSFLQSLTKRKKSP ETLVKLAVACLQELPASEDESWTCPTAEGVKPLTGALGGLSLDEAVNAKQ PPKHVDSDDLSVSGQSISSSTASSGSDAAVSRRPSFFLSAFGKKESSSNS ADPGSAAPHSQSSLGSSGESGAADTTTKSGRPGSLLVSKFFSDSSRKPAP LSPHGSGLSQSASLGQTGAEDGTVMERLAKRLAQMKLVLYGDGEKEVDKD KCVDLAENIIKEGLMPLLLDRFTNLPFEARKDAAQIFNNIARHNHGGFAD PYIADQHFSIMEQLINGYGHPEVALNCGSMLREAARHEKVARRVLFSPHI WAFFDTYVHLPNFDVASDSFATLRDLLTKHKAVAADFLEKEYDLVFSKYR SLLASDNYVTRRMSLKMLGEILLDRSNFNVM* back to topmRNA from alignment at chr15:330397..333884+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G01160.2 ID=NO15G01160.2|Name=NO15G01160.2|organism=Nannochloropsis oceanica|type=mRNA|length=3488bp|location=Sequence derived from alignment at chr15:330397..333884+ (Nannochloropsis oceanica) CCCCAACCCTGCTTCTATAACGATCAGGCAGCCCGTCCAATGCATCACCC
ACACAGCGTACATAACCACGACCACACAAATATAAAGAGGCAATTAAGCA
ACCAGCAGCAAGGCAATCTCTCGACGACAGCCATGCCAACCGGCGGCTCC
AGTTTCCTGCAGAGCTTGACGAAGCGCAAGAAGTCACCCGAGACGCTCGT
CAAACTGGCAGTAGCATGCCTGCAAGAATTACCCGCCTCGGAGGACGAGA
GTTGGACTTGTCCCACGGCCGAGGGAGTTAAGCCACTCACTGGGGCTTTG
GGAGGGCTCAGCCTCGACGAGGCGGTAAACGCCAAGCAGCCGCCAAAACA
TGTGGACAGCGACGACCTAAGCGTTTCGGGGCAGTCCATCTCGTCATCCA
CTGCCTCGAGTGGCAGCGACGCGGCCGTGTCTCGGCGGCCCAGCTTTTTC
TTGAGCGCTTTTGGCAAGAAGGAGTCCTCTTCTAATTCGGCAGACCCTGG
GTCGGCGGCGCCACACTCGCAATCCAGCCTGGGCTCCAGTGGGGAAAGCG
GGGCGGCCGACACAACAACCAAATCTGGGCGGCCGGGTTCCCTTTTGGTG
AGCAAGTTCTTCTCGGACTCAAGCCGGAAGCCTGCACCCCTGAGCCCGCA
TGGGTCGGGGCTATCGCAATCGGCGAGCCTGGGTCAGACGGGTGCGGAGG
ACGGCACGGTGATGGAGCGGCTGGCAAAGCGGCTGGCGCAGATGAAGCTG
GTGCTGTACGGGGACGGCGAGAAGGAGGTAGACAAAGACAAGTGTGTGGA
CCTGGCCGAAAATATTATCAAAGAAGGGCTCATGCCTTTGCTGCTGGACC
GATTCACGAATCTACCGTTCGAGGCCCGCAAGGACGCGGCCCAGATTTTT
AACAACATCGCCCGCCACAACCACGGAGGCTTCGCTGACCCCTACATCGC
CGACCAGCACTTTTCAATCATGGAACAGCTCATCAATGTACGCAGGCATC
TGATTGGATAGGTTCAAAGGGAGACCTGTATAGGTTCATCGTGCTTACAT
CTCATCTCTCTTCTATCTCTCCACAGGGCTATGGCCACCCCGAGGTGGCT
CTGAACTGTGGGTCGATGCTGCGGGAGGCGGCCCGGCATGAAAAGGTGGC
ACGGCGGGTTCTGTTCTCGCCACACATCTGGGCATTTTTTGATACGTACG
TGCACCTGCCAAACTTCGACGTGGCCTCGGACTCGTTCGCCACGCTGCGC
GACCTACTGACCAAACACAAGGCCGTGGCAGCCGACTTCCTAGAGAAGGA
GTACGACCTCGTCTTCAGCAAATATCGCAGCCTGCTCGCCTCCGACAACT
ACGTCACTCGCCGCATGTCCCTCAAGATGCTGGGCGAGATCCTCCTCGAT
CGCTCGAATTTCAACGTCATGTAAGTTGTTTGTTATCGTGTTTTTTGGTA
CTTCAACTCAACTGCACTAGGTACTTGATTACCATCACTCGATCATCGAC
ATGAACTAGACCGGAGGCGTTGACAGTCTTGATTTTGGCGTCAGGGAGGT
TGCTGTTGGAGCAGCAATTAAAGCTACATAATTCACACAGACACTACGTG
CAGACAGAGGCATGACTTCTGGGAGCCGATGCCGATTGTCTCACCACGAC
TCTCAATCTCCCTCTCCCTGTACTTCAGGATGCGATATATCTCGTCGAAG
GAGAATCTGAAGACGATCATGAATCTGCTGCGCGACAAGAGCGCATCCAT
CCAGTTCGAAGCCTTCCACGTGTTCAAGGTGTTTGTGGCCAACCCCAAAA
AGCCTCCAGAGATAGTCAAGATCCTTGTCACGAATCGGGACAAGCTCGTC
AGCTACCTGACCCACTTCCACACTGACAAGGACGACGACCAGTTTCGCGA
GGAAAAGGCTCTACTTGTCAATACGCTCGCCAAGCTTGAGTACGAAGAGC
CCCCCAAGTAGAAGGACAGCGGGACAAAGAGGAAGAGCGAGCGCGACAAA
AAGCAGGGTTGCGGACGAGAGGTGTCGCCACACAGTAGCGACTCAAAGCA
AGGTCAACGTCAGGATTTTGTAGGACCAAGAAAGGAAAAAGAAATGTCTT
TGAGCGGAATATGTATCTCATTTAATTTGACGAGCTAGGGCGCGGTGGGG
TGTCCACTCAAGCGAGTGAAAATAACACCCAACCTCACGGCTCTGCTTTG
CCTACGAAAAATACATCGTCTTTTCTTTTGTTTCTGCCGGTCACTGCACT
TCCTGTAATAGATGCTGCTGTATTTGTCGTTGGAGATCTGTGCCGTTGCG
TACGTATAGGCTCGTGATTGCGCCGAAGCGTGTGCTGTGGGTCAAGGTAA
CCCGGAGCTCGTGGTCTAAGAAGGCCGTCTCTACAAAGGTCCCGTTGGGG
TCGAACGCGTCGAAGGGCACCACCCGCTGCACGGCCCGGATGAGTGCATC
TGGGTTACGGGGGGCACGATTCATGCTCATATCGTGCTCCACCTCCCCCA
TTTCTAATAAGCCTCGGCTGTTGACCTCGTAGCTGCTGCGGACGACCAAG
GCCCCCGCCAAGCCAGTATCCCCTTCCTCGCTCGCCGTGCACTCCCATTT
AACTGTATTGATGATGCACCCTTTCGTCACGTTTGGAATTAGTATTTGTT
GAAAATCACTCAGCACCATCTGCGTGGCGGCCATCGGTGCAGGGCCTCCT
AAGGCTGCCGCGGCCGCCCCTGCGGCCCAATCCTCCTCCTCAGCGGGACC
CAAGAGATCCAGGAAATTGTCCTCGTCCTCCTCCTCTCTTTCATCCTCAG
CAAGCAGGCTGCGCGCCTCTGCCACTTTACGCCGCACTGTCCAGGAATTG
TATATGTTCAACCAACTGCCTTGCAGTAGCAAATTCATAAAGGGCAAGGT
TTGAGGGGGCACGTACTTCTCCTTGAGCTGGCCCACGACAAAGTCAATGC
GCTGGGCGATGGATTCTTCCCTCCCTTCTCTGACATCCTCCGGCATGGTG
ACCAGAGTCAAAAGCTCCTCCCGGTGCTTGATGCTGGACGAAAAGGCGGA
GCTGGTGGGCGCGATAGCAAAGGCGGGGTCCGTGGTGGTGGATGCTGCTA
GTACTTGGCACTTCCAGAGTCTGGGAATAAGAAAGGCAGACGATCTACGG
CAAATTCCTGGCAGCCCAACAATTAAGAGCATTCCCTTCCTAGCTTTGCT
GCCAGCCCGGCAACGCATGCTTGGCAATCGACCCATCAAAGGCGCTATGT
ATGTAAGTGCGTGCGTAGGGATGCATGAGAAGGGGTAACCATGGGTGACT
TCAACGATTAGAGAGGCGGCTCTGGAGTATCTTTGCGTCCAGCCAGAGGC
ACAGGTCACGGCCGGGCTCACACTGCGATTTTAAGATGGGTCTTCCATGT
GTTTCTCTCAGTAAGTGTTGACAATCAGAGTTAGCTGTGTGTCGCTTTGC
GTGCAAGCAACAAAACCAGTCAAGCAAACCTCCCACAA back to topCoding sequence (CDS) from alignment at chr15:330397..333884+ >NO15G01160.2 ID=NO15G01160.2|Name=NO15G01160.2|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr15:330397..333884+ (Nannochloropsis oceanica) ATGCATCACCCACACAGCGTACATAACCACGACCACACAAATATAAAGAG GCAATTAAGCAACCAGCAGCAAGGCAATCTCTCGACGACAGCCATGCCAA CCGGCGGCTCCAGTTTCCTGCAGAGCTTGACGAAGCGCAAGAAGTCACCC GAGACGCTCGTCAAACTGGCAGTAGCATGCCTGCAAGAATTACCCGCCTC GGAGGACGAGAGTTGGACTTGTCCCACGGCCGAGGGAGTTAAGCCACTCA CTGGGGCTTTGGGAGGGCTCAGCCTCGACGAGGCGGTAAACGCCAAGCAG CCGCCAAAACATGTGGACAGCGACGACCTAAGCGTTTCGGGGCAGTCCAT CTCGTCATCCACTGCCTCGAGTGGCAGCGACGCGGCCGTGTCTCGGCGGC CCAGCTTTTTCTTGAGCGCTTTTGGCAAGAAGGAGTCCTCTTCTAATTCG GCAGACCCTGGGTCGGCGGCGCCACACTCGCAATCCAGCCTGGGCTCCAG TGGGGAAAGCGGGGCGGCCGACACAACAACCAAATCTGGGCGGCCGGGTT CCCTTTTGGTGAGCAAGTTCTTCTCGGACTCAAGCCGGAAGCCTGCACCC CTGAGCCCGCATGGGTCGGGGCTATCGCAATCGGCGAGCCTGGGTCAGAC GGGTGCGGAGGACGGCACGGTGATGGAGCGGCTGGCAAAGCGGCTGGCGC AGATGAAGCTGGTGCTGTACGGGGACGGCGAGAAGGAGGTAGACAAAGAC AAGTGTGTGGACCTGGCCGAAAATATTATCAAAGAAGGGCTCATGCCTTT GCTGCTGGACCGATTCACGAATCTACCGTTCGAGGCCCGCAAGGACGCGG CCCAGATTTTTAACAACATCGCCCGCCACAACCACGGAGGCTTCGCTGAC CCCTACATCGCCGACCAGCACTTTTCAATCATGGAACAGCTCATCAATGG CTATGGCCACCCCGAGGTGGCTCTGAACTGTGGGTCGATGCTGCGGGAGG CGGCCCGGCATGAAAAGGTGGCACGGCGGGTTCTGTTCTCGCCACACATC TGGGCATTTTTTGATACGTACGTGCACCTGCCAAACTTCGACGTGGCCTC GGACTCGTTCGCCACGCTGCGCGACCTACTGACCAAACACAAGGCCGTGG CAGCCGACTTCCTAGAGAAGGAGTACGACCTCGTCTTCAGCAAATATCGC AGCCTGCTCGCCTCCGACAACTACGTCACTCGCCGCATGTCCCTCAAGAT GCTGGGCGAGATCCTCCTCGATCGCTCGAATTTCAACGTCATGTAA back to top
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