NO15G01070.1, NO15G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01070.1
Unique NameNO15G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr15:312380..314140 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:312380..314140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01070.1 vs.
Match: EWM22454.1 (30s ribosomal protein s1 [Nannochloropsis gaditana])

HSP 1 Score: 603.6 bits (1555), Expect = 5.000e-169
Identity = 313/442 (70.81%), Postives = 366/442 (82.81%), Query Frame = 0 
Query:    3 RRPAAWALACCVLAIDCAALSSHAAFVSPLPSFACGRGRGRAHTAVVAEKPL--STPSIYSAAAGQEEYDTQSPTTEAAVVVVEVRGGKTREEERKSKHFDFLKEVAQNKKQARANKAKFRDQRDEYLEEMRKAFKLMQIKEREESGFKWVKRPRRDRKMPLSELKLGAKHEAVVITVKEHGAYVDFGAKKDGFVRLRDLSDRDFVLDARDYLRPGDTVNFYVKYVSPAEGIVTGSLVPAEIETEKELAARTPLAEVREADELWGEVTKVSNYGAFVDVGVEVQGFLHIIYYPKRAQGALTQDVFRPGMRLRVWAMEVDTEKRRLKLTAERPRSLPRVDYSWYMGGFEVAGSEDAPGRGFVEEMDFQPSYEDGQGLQARGRGKHAMERMQEWNFDDESGRNGGMRRRGEGEKEVVHNLDADRQGMDKEEAA--LALEEKAGQ 441
            RR AA   ACC++A+ C A SSHAAF+SPL  F CGR RGR HTAVVAE+P    TPSIYSAA G  E ++++P   + V   E R G  RE ERK KHFDFLKEV +NKKQARANKA+FRDQRDEYLEEMRKAFKLMQIKER+ESGFKWVKRP+R+R++PL EL+LG++HE VVITVKEHGAYVDFGA KDGFVRLRDLSDRDFVLDARDY+RPGD V+F+VKY+SPAEGIVTGSLVPAE+ET +E  ART L EV E DELWGEVTKVSNYGAFVDVG EVQGFLH+IYYP+R++GALTQDVF PGMRLRVWAMEVD ++RRLKLT ERPRSLPRVDYSW++GG+EVAGSE APGRGFVEE   +P YE+GQGLQ RGRGK AMER++EW F+ + GR          +KE++H+LDA R+  ++EEAA   ++E++ G+
Sbjct:   15 RRSAARTFACCIVALGCVAWSSHAAFISPLHHFGCGRARGRVHTAVVAERPSVQPTPSIYSAATGHGEEESEAPRLNSDV---EGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSWFLGGYEVAGSEAAPGRGFVEEEWRRPLYEEGQGLQPRGRGKRAMERIREWGFETDGGR----------KKEMLHDLDAARRRKEEEEAAASASVEDRVGK 443
The following BLAST results are available for this feature:
BLAST of NO15G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22454.15.000e-16970.8130s ribosomal protein s1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01070NO15G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01070.1NO15G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01070.1.cds1NO15G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01070.1.cds2NO15G01070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01070.1 ID=NO15G01070.1|Name=NO15G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
ACAGGTGGACTCGGGACTGGGAGCTTGGAGGGCAGGGCATCTCGACGCAC
TGGAGTGCGCATCATCAGCAGGAGTTGAAGGACTGTTCGTCATTGCGTGG
CCCACAGACCTAGGCATACCCATGGCACGACGCCCTGCTGCATGGGCACT
TGCTTGTTGCGTGCTTGCAATAGATTGCGCGGCATTGTCGTCACATGCTG
CCTTCGTATCCCCTCTGCCCTCCTTCGCATGCGGGCGAGGACGAGGCAGG
GCACACACGGCAGTGGTGGCGGAGAAGCCTTTGTCCACGCCGTCCATCTA
CTCAGCCGCTGCAGGCCAAGAAGAATACGACACCCAATCACCAACAACTG
AAGCAGCAGTCGTAGTAGTAGAAGTCAGGGGGGGAAAAACTCGGGAGGAA
GAGCGCAAGAGCAAGCACTTTGATTTCCTCAAGGAAGTCGCTCAGAACAA
GAAGCAAGCTCGGGCCAACAAGGCCAAATTTCGTGACCAACGAGATGAGT
ACTTGGAGGAAATGCGTAAGGCCTTCAAACTCATGCAGATAAAAGAGCGG
GAGGAGAGTGGCTTTAAGTGGGTCAAGCGGCCTAGGCGCGACCGAAAGAT
GCCTCTCTCGGAGCTCAAGCTGGGCGCCAAGCACGAGGCGGTCGTCATCA
CTGTAAAGGAGCACGGAGCATACGTGGATTTCGGGGCCAAGAAGGACGGT
TTCGTACGTTTGCGTGACTTGAGCGACCGAGACTTTGTGCTGGACGCGCG
GGACTATTTGAGGCCGGGTGACACAGTCAATTTTTACGTCAAGTACGTGA
GCCCCGCCGAGGGTATTGTGACGGGCAGTTTGGTCCCAGCCGAGATTGAG
ACGGAGAAGGAACTGGCAGCCCGAACGCCTTTGGCCGAGGTCCGGGAGGC
GGATGAGCTTTGGGGTGAGGTGACCAAGGTGTCGAATTACGGGGCCTTCG
TGGATGTGGGCGTTGAGGTGCAAGGCTTCCTTCACATTATCTACTACCCC
AAGCGGGCCCAGGGGGCTTTGACGCAGGATGTGTTTCGCCCCGGTATGCG
CCTAAGGGTGTGGGCTATGGAGGTGGACACGGAGAAGCGTCGCTTGAAGC
TGACGGCGGAACGGCCTCGTTCCCTCCCTCGGGTGGATTACTCTTGGTAC
ATGGGTGGCTTTGAGGTGGCGGGATCAGAGGATGCACCTGGACGAGGATT
CGTGGAGGAGATGGACTTTCAGCCGTCGTATGAGGATGGACAGGGGCTGC
AGGCACGGGGCAGGGGAAAGCATGCGATGGAGAGGATGCAAGAGTGGAAT
TTTGATGATGAGAGTGGGCGCAATGGGGGAATGAGGAGAAGGGGGGAGGG
GGAGAAGGAGGTGGTGCATAATTTGGATGCGGACCGGCAAGGAATGGATA
AAGAAGAGGCAGCATTGGCGCTGGAAGAGAAGGCGGGCCAAAATGGCAGC
CCTGCAAGTAAGTGAGCGGGGAGACCTCAGATTCATTCACATGTGAGTAG
CGCAAGGCAGAGGGAAAAGAAGAAGAAAAAGAAGGGGCCATT
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protein sequence of NO15G01070.1

>NO15G01070.1-protein ID=NO15G01070.1-protein|Name=NO15G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MARRPAAWALACCVLAIDCAALSSHAAFVSPLPSFACGRGRGRAHTAVVA
EKPLSTPSIYSAAAGQEEYDTQSPTTEAAVVVVEVRGGKTREEERKSKHF
DFLKEVAQNKKQARANKAKFRDQRDEYLEEMRKAFKLMQIKEREESGFKW
VKRPRRDRKMPLSELKLGAKHEAVVITVKEHGAYVDFGAKKDGFVRLRDL
SDRDFVLDARDYLRPGDTVNFYVKYVSPAEGIVTGSLVPAEIETEKELAA
RTPLAEVREADELWGEVTKVSNYGAFVDVGVEVQGFLHIIYYPKRAQGAL
TQDVFRPGMRLRVWAMEVDTEKRRLKLTAERPRSLPRVDYSWYMGGFEVA
GSEDAPGRGFVEEMDFQPSYEDGQGLQARGRGKHAMERMQEWNFDDESGR
NGGMRRRGEGEKEVVHNLDADRQGMDKEEAALALEEKAGQNGSPASK*
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mRNA from alignment at chr15:312380..314140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01070.1 ID=NO15G01070.1|Name=NO15G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at chr15:312380..314140- (Nannochloropsis oceanica)
ACAGGTGGACTCGGGACTGGGAGCTTGGAGGGCAGGGCATCTCGACGCAC
TGGAGTGCGCATCATCAGCAGGAGTTGAAGGACTGTTCGTCATTGCGTGG
CCCACAGACCTAGGCATACCCATGGCACGACGCCCTGCTGCATGGGCACT
TGCTTGTTGCGTGCTTGCAATAGATTGCGCGGCATTGTCGTCACATGCTG
CCTTCGTATCCCCTCTGCCCTCCTTCGCATGCGGGCGAGGACGAGGCAGG
GCACACACGGCAGTGGTGGCGGAGAAGCCTTTGTCCACGCCGTCCATCTA
CTCAGCCGCTGCAGGCCAAGAAGAATACGACACCCAATCACCAACAACTG
AAGCAGCAGTCGTAGTAGTAGAAGTCAGGGGGGGAAAAACTCGGGAGGAA
GAGCGCAAGAGCAAGCACTTTGATTTCCTCAAGGTATGTATGTAGTGCAC
ATGAGAAGGGAGGGAGGGCAAGGGCACATACTCCTCTAGAAACAACCACT
TTCCATGTTCTGGGCGACTTTCGCAGTTGGTAAGAGTTGCCATCATGTAA
TGTTTTGGAAGGAGAGAGACCTGTCGGGCTACCATAGACACAAGATCTCA
CCAACTTCTCTTCCCTCGCCTCCCTGTACTATATTCTCCCCACACTTTGC
AGGAAGTCGCTCAGAACAAGAAGCAAGCTCGGGCCAACAAGGCCAAATTT
CGTGACCAACGAGATGAGTACTTGGAGGAAATGCGTAAGGCCTTCAAACT
CATGCAGATAAAAGAGCGGGAGGAGAGTGGCTTTAAGTGGGTCAAGCGGC
CTAGGCGCGACCGAAAGATGCCTCTCTCGGAGCTCAAGCTGGGCGCCAAG
CACGAGGCGGTCGTCATCACTGTAAAGGAGCACGGAGCATACGTGGATTT
CGGGGCCAAGAAGGACGGTTTCGTACGTTTGCGTGACTTGAGCGACCGAG
ACTTTGTGCTGGACGCGCGGGACTATTTGAGGCCGGGTGACACAGTCAAT
TTTTACGTCAAGTACGTGAGCCCCGCCGAGGGTATTGTGACGGGCAGTTT
GGTCCCAGCCGAGATTGAGACGGAGAAGGAACTGGCAGCCCGAACGCCTT
TGGCCGAGGTCCGGGAGGCGGATGAGCTTTGGGGTGAGGTGACCAAGGTG
TCGAATTACGGGGCCTTCGTGGATGTGGGCGTTGAGGTGCAAGGCTTCCT
TCACATTATCTACTACCCCAAGCGGGCCCAGGGGGCTTTGACGCAGGATG
TGTTTCGCCCCGGTATGCGCCTAAGGGTGTGGGCTATGGAGGTGGACACG
GAGAAGCGTCGCTTGAAGCTGACGGCGGAACGGCCTCGTTCCCTCCCTCG
GGTGGATTACTCTTGGTACATGGGTGGCTTTGAGGTGGCGGGATCAGAGG
ATGCACCTGGACGAGGATTCGTGGAGGAGATGGACTTTCAGCCGTCGTAT
GAGGATGGACAGGGGCTGCAGGCACGGGGCAGGGGAAAGCATGCGATGGA
GAGGATGCAAGAGTGGAATTTTGATGATGAGAGTGGGCGCAATGGGGGAA
TGAGGAGAAGGGGGGAGGGGGAGAAGGAGGTGGTGCATAATTTGGATGCG
GACCGGCAAGGAATGGATAAAGAAGAGGCAGCATTGGCGCTGGAAGAGAA
GGCGGGCCAAAATGGCAGCCCTGCAAGTAAGTGAGCGGGGAGACCTCAGA
TTCATTCACATGTGAGTAGCGCAAGGCAGAGGGAAAAGAAGAAGAAAAAG
AAGGGGCCATT
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Coding sequence (CDS) from alignment at chr15:312380..314140-

>NO15G01070.1 ID=NO15G01070.1|Name=NO15G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr15:312380..314140- (Nannochloropsis oceanica)
ATGGCACGACGCCCTGCTGCATGGGCACTTGCTTGTTGCGTGCTTGCAAT
AGATTGCGCGGCATTGTCGTCACATGCTGCCTTCGTATCCCCTCTGCCCT
CCTTCGCATGCGGGCGAGGACGAGGCAGGGCACACACGGCAGTGGTGGCG
GAGAAGCCTTTGTCCACGCCGTCCATCTACTCAGCCGCTGCAGGCCAAGA
AGAATACGACACCCAATCACCAACAACTGAAGCAGCAGTCGTAGTAGTAG
AAGTCAGGGGGGGAAAAACTCGGGAGGAAGAGCGCAAGAGCAAGCACTTT
GATTTCCTCAAGGAAGTCGCTCAGAACAAGAAGCAAGCTCGGGCCAACAA
GGCCAAATTTCGTGACCAACGAGATGAGTACTTGGAGGAAATGCGTAAGG
CCTTCAAACTCATGCAGATAAAAGAGCGGGAGGAGAGTGGCTTTAAGTGG
GTCAAGCGGCCTAGGCGCGACCGAAAGATGCCTCTCTCGGAGCTCAAGCT
GGGCGCCAAGCACGAGGCGGTCGTCATCACTGTAAAGGAGCACGGAGCAT
ACGTGGATTTCGGGGCCAAGAAGGACGGTTTCGTACGTTTGCGTGACTTG
AGCGACCGAGACTTTGTGCTGGACGCGCGGGACTATTTGAGGCCGGGTGA
CACAGTCAATTTTTACGTCAAGTACGTGAGCCCCGCCGAGGGTATTGTGA
CGGGCAGTTTGGTCCCAGCCGAGATTGAGACGGAGAAGGAACTGGCAGCC
CGAACGCCTTTGGCCGAGGTCCGGGAGGCGGATGAGCTTTGGGGTGAGGT
GACCAAGGTGTCGAATTACGGGGCCTTCGTGGATGTGGGCGTTGAGGTGC
AAGGCTTCCTTCACATTATCTACTACCCCAAGCGGGCCCAGGGGGCTTTG
ACGCAGGATGTGTTTCGCCCCGGTATGCGCCTAAGGGTGTGGGCTATGGA
GGTGGACACGGAGAAGCGTCGCTTGAAGCTGACGGCGGAACGGCCTCGTT
CCCTCCCTCGGGTGGATTACTCTTGGTACATGGGTGGCTTTGAGGTGGCG
GGATCAGAGGATGCACCTGGACGAGGATTCGTGGAGGAGATGGACTTTCA
GCCGTCGTATGAGGATGGACAGGGGCTGCAGGCACGGGGCAGGGGAAAGC
ATGCGATGGAGAGGATGCAAGAGTGGAATTTTGATGATGAGAGTGGGCGC
AATGGGGGAATGAGGAGAAGGGGGGAGGGGGAGAAGGAGGTGGTGCATAA
TTTGGATGCGGACCGGCAAGGAATGGATAAAGAAGAGGCAGCATTGGCGC
TGGAAGAGAAGGCGGGCCAAAATGGCAGCCCTGCAAGTAAGTGA
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Synonyms
Publications