NO15G01050.1, NO15G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01050.1
Unique NameNO15G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1056
Alignment locationchr15:307622..308799 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:307622..308799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01050.1 vs.
Match: EWM22434.1 (lysosomal aspartic protease [Nannochloropsis gaditana])

HSP 1 Score: 404.1 bits (1037), Expect = 4.600e-109
Identity = 179/271 (66.05%), Postives = 223/271 (82.29%), Query Frame = 0 
Query:   80 TDSSSTFKRDGGRFEITYMGGPVSGYLAEDTVTLGGYAVRNQTFAQITNPLGLGTSYLGGGYDGVLGLGFDEISVANTITPFHNLIQQQGKALPEPVFAFYLGGEGAGLGELTVGGTDPSHYLGQLHWVPLEEPPGYWAVGLDRVHLGAQDSQSKAHLAVMDSGASLIIGPKRDVDAIAEGLGATATNRIYTVDCGKRKTMPTIEFVVDGQPYALNADDYVIEDGPLCLLGLQGDEHMSAQWILGDVFLRKYYSAYDYKNKRVGLALATKG 351
            +D+SS+F++DG  F+ITY+GGPV+GYLAEDTV   GYAV+NQ+FAQITNPLGLG SY GGGYDGV GLGFDE+SV  + TPFHNLI+QQG+ LP+P+FAF+L     G  ELTVGGTDPSHY G LHW+PL +PPGYWAVGLD V+LG +  QS+A   V+DSG S+++GPK DVDAI EGLGAT    ++TV+C  +  MP +EF++DGQPYAL+ADDY+++D  +CL+GLQGD+H  AQWILGD+FLRK+YSAYDY+N+R GLALA  G
Sbjct:  118 SDASSSFEQDGRSFQITYIGGPVTGYLAEDTVLFAGYAVKNQSFAQITNPLGLGASYSGGGYDGVFGLGFDELSVTKSTTPFHNLIEQQGEVLPQPIFAFFLANGDTGPSELTVGGTDPSHYEGDLHWMPLHDPPGYWAVGLDSVYLGPRKLQSQAGAVVLDSGTSIMVGPKTDVDAIFEGLGATLVENLFTVNCSLKAAMPDLEFILDGQPYALSADDYLVQDRDICLVGLQGDDHAQAQWILGDMFLRKFYSAYDYQNRRAGLALAKTG 388
The following BLAST results are available for this feature:
BLAST of NO15G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22434.14.600e-10966.05lysosomal aspartic protease [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01050NO15G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01050.1NO15G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01050.1.cds1NO15G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01050.1.cds2NO15G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01050.1 ID=NO15G01050.1|Name=NO15G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ATGCAGGAGGGTCGTAACAAGCAGCTTTTGCTGCTCCTGGCGACAATCAC
ATCATCTATAGGGGCCACTGCCATTGCGATGGCCGAGAGAGATTCTCCTC
CCACCCTTGAGCCAACCCTAATGCGCATCCCCCTGGCCAAGGTGGCTCTG
CCTCCCCGCGGTGTCCATCACCGGCAACGTGGCCTGGCAGAAAAGGGGGA
GATCATCTTGAGAGATGTCTACCAGGATGTAGCCTACACAGACTCCTCAT
CGACCTTCAAGAGGGATGGGGGTCGCTTTGAGATCACATACATGGGAGGC
CCTGTCTCCGGCTACCTGGCTGAGGACACGGTCACCTTAGGTGGTTATGC
CGTAAGGAATCAGACGTTTGCCCAGATCACCAACCCCTTGGGCCTGGGGA
CTAGCTACTTGGGAGGGGGATACGACGGCGTTTTGGGATTGGGATTTGAC
GAGATTTCAGTGGCCAATACTATAACACCTTTTCATAATTTGATCCAGCA
GCAGGGCAAGGCGCTGCCCGAGCCGGTGTTTGCTTTTTATTTGGGAGGGG
AGGGAGCGGGGCTGGGCGAGCTGACGGTGGGCGGCACCGACCCAAGTCAT
TACTTAGGACAATTGCATTGGGTGCCCTTAGAGGAACCGCCGGGGTACTG
GGCTGTTGGGTTGGATAGGGTGCATCTGGGAGCACAGGATTCTCAGAGCA
AGGCACACCTGGCAGTGATGGACTCGGGCGCATCCCTTATTATTGGGCCG
AAGCGGGACGTGGATGCCATAGCCGAGGGACTCGGGGCAACGGCCACGAA
TCGAATTTATACGGTGGATTGTGGAAAGAGGAAAACGATGCCGACAATAG
AGTTTGTGGTCGATGGGCAGCCCTATGCTTTAAATGCGGACGATTACGTG
ATAGAGGATGGGCCTTTGTGCCTATTGGGGCTGCAGGGCGACGAGCACAT
GAGCGCTCAGTGGATACTGGGGGATGTATTTTTGCGAAAGTATTACTCGG
CCTATGATTATAAGAATAAGCGGGTTGGTTTGGCGTTGGCTACTAAGGGC
TCTTAA
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protein sequence of NO15G01050.1

>NO15G01050.1-protein ID=NO15G01050.1-protein|Name=NO15G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MQEGRNKQLLLLLATITSSIGATAIAMAERDSPPTLEPTLMRIPLAKVAL
PPRGVHHRQRGLAEKGEIILRDVYQDVAYTDSSSTFKRDGGRFEITYMGG
PVSGYLAEDTVTLGGYAVRNQTFAQITNPLGLGTSYLGGGYDGVLGLGFD
EISVANTITPFHNLIQQQGKALPEPVFAFYLGGEGAGLGELTVGGTDPSH
YLGQLHWVPLEEPPGYWAVGLDRVHLGAQDSQSKAHLAVMDSGASLIIGP
KRDVDAIAEGLGATATNRIYTVDCGKRKTMPTIEFVVDGQPYALNADDYV
IEDGPLCLLGLQGDEHMSAQWILGDVFLRKYYSAYDYKNKRVGLALATKG
S*
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mRNA from alignment at chr15:307622..308799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01050.1 ID=NO15G01050.1|Name=NO15G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp|location=Sequence derived from alignment at chr15:307622..308799+ (Nannochloropsis oceanica)
ATGCAGGAGGGTCGTAACAAGCAGCTTTTGCTGCTCCTGGCGACAATCAC
ATCATCTATAGGGGCCACTGCCATTGCGATGGCCGAGAGAGATTCTCCTC
CCACCCTTGAGCCAACCCTAATGCGCATCCCCCTGGCCAAGGTGGCTCTG
CCTCCCCGCGGTGTCCATCACCGGCAACGTGGCCTGGCAGAAAAGGGGGA
GATCATCTTGAGAGATGTCTACCAGGATGTAGCCTACACAGGTGTGATTG
GTATTGGGACCCCCCCCGTGAGTTCACCGTCATCTTCGATACGGGCAGCA
GCGACCTGTGGGTGCCCTCGGCCCTGTGCAAAGTATGTGGCCACCGCAAT
AAGTATAATTCAGACTCCTCATCGACCTTCAAGAGGGATGGGGGTCGCTT
TGAGATCACATACATGGGAGGCCCTGTCTCCGGCTACCTGGCTGAGGACA
CGGTCACCTTAGGTGGTTATGCCGTAAGGAATCAGACGTTTGCCCAGATC
ACCAACCCCTTGGGCCTGGGGACTAGCTACTTGGGAGGGGGATACGACGG
CGTTTTGGGATTGGGATTTGACGAGATTTCAGTGGCCAATACTATAACAC
CTTTTCATAATTTGATCCAGCAGCAGGGCAAGGCGCTGCCCGAGCCGGTG
TTTGCTTTTTATTTGGGAGGGGAGGGAGCGGGGCTGGGCGAGCTGACGGT
GGGCGGCACCGACCCAAGTCATTACTTAGGACAATTGCATTGGGTGCCCT
TAGAGGAACCGCCGGGGTACTGGGCTGTTGGGTTGGATAGGGTGCATCTG
GGAGCACAGGATTCTCAGAGCAAGGCACACCTGGCAGTGATGGACTCGGG
CGCATCCCTTATTATTGGGCCGAAGCGGGACGTGGATGCCATAGCCGAGG
GACTCGGGGCAACGGCCACGAATCGAATTTATACGGTGGATTGTGGAAAG
AGGAAAACGATGCCGACAATAGAGTTTGTGGTCGATGGGCAGCCCTATGC
TTTAAATGCGGACGATTACGTGATAGAGGATGGGCCTTTGTGCCTATTGG
GGCTGCAGGGCGACGAGCACATGAGCGCTCAGTGGATACTGGGGGATGTA
TTTTTGCGAAAGTATTACTCGGCCTATGATTATAAGAATAAGCGGGTTGG
TTTGGCGTTGGCTACTAAGGGCTCTTAA
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Coding sequence (CDS) from alignment at chr15:307622..308799+

>NO15G01050.1 ID=NO15G01050.1|Name=NO15G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr15:307622..308799+ (Nannochloropsis oceanica)
ATGCAGGAGGGTCGTAACAAGCAGCTTTTGCTGCTCCTGGCGACAATCAC
ATCATCTATAGGGGCCACTGCCATTGCGATGGCCGAGAGAGATTCTCCTC
CCACCCTTGAGCCAACCCTAATGCGCATCCCCCTGGCCAAGGTGGCTCTG
CCTCCCCGCGGTGTCCATCACCGGCAACGTGGCCTGGCAGAAAAGGGGGA
GATCATCTTGAGAGATGTCTACCAGGATGTAGCCTACACAGACTCCTCAT
CGACCTTCAAGAGGGATGGGGGTCGCTTTGAGATCACATACATGGGAGGC
CCTGTCTCCGGCTACCTGGCTGAGGACACGGTCACCTTAGGTGGTTATGC
CGTAAGGAATCAGACGTTTGCCCAGATCACCAACCCCTTGGGCCTGGGGA
CTAGCTACTTGGGAGGGGGATACGACGGCGTTTTGGGATTGGGATTTGAC
GAGATTTCAGTGGCCAATACTATAACACCTTTTCATAATTTGATCCAGCA
GCAGGGCAAGGCGCTGCCCGAGCCGGTGTTTGCTTTTTATTTGGGAGGGG
AGGGAGCGGGGCTGGGCGAGCTGACGGTGGGCGGCACCGACCCAAGTCAT
TACTTAGGACAATTGCATTGGGTGCCCTTAGAGGAACCGCCGGGGTACTG
GGCTGTTGGGTTGGATAGGGTGCATCTGGGAGCACAGGATTCTCAGAGCA
AGGCACACCTGGCAGTGATGGACTCGGGCGCATCCCTTATTATTGGGCCG
AAGCGGGACGTGGATGCCATAGCCGAGGGACTCGGGGCAACGGCCACGAA
TCGAATTTATACGGTGGATTGTGGAAAGAGGAAAACGATGCCGACAATAG
AGTTTGTGGTCGATGGGCAGCCCTATGCTTTAAATGCGGACGATTACGTG
ATAGAGGATGGGCCTTTGTGCCTATTGGGGCTGCAGGGCGACGAGCACAT
GAGCGCTCAGTGGATACTGGGGGATGTATTTTTGCGAAAGTATTACTCGG
CCTATGATTATAAGAATAAGCGGGTTGGTTTGGCGTTGGCTACTAAGGGC
TCTTAA
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Synonyms
Publications