NO15G00940.1, NO15G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00940.1
Unique NameNO15G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr15:284496..285959 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:284496..285959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G00940.1 vs.
Match: EWM22497.1 (tyrosyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 762.7 bits (1968), Expect = 7.000e-217
Identity = 393/488 (80.53%), Postives = 430/488 (88.11%), Query Frame = 0 
Query:    1 MLFLAFARKTTTAWR--IPLSYSSSLSSTIRWATALSDKSLTPSRRTITILSSIPAPETDISAQGQVLPTSFKSTFLQTLSTRGYIHQCTDFKALDEACAAGEPIAAYLGFDATAPSLHVGSLLQIMILRHLQKSGHKPLVLMGGGTTKVGDPSGKDEARKLMTYEVIQRNIDSISAVFRQFLKFGEGPTEALLVNNDDWLSSIRYLDFLRDYGQHFTINRMLNFDSVKVRLERESPLSFLEFNYMILQAYDFLELSRRFNARLQLGGSDQWGNIINGVELARKVDGKHLFGLTAPLMTTSDGKKMGKTASGAVWLKKELLSEYEYWQFWRNTNDADVTRFLKLFTEMPLDKIEELARLEGARINEAKVILADEATKLLHGEECLSEIHATVANLFSGGGSDSTEALPRVVVGKAELGDAGMQVAELFVRLEMSKSKAEARRLIKGGGARLNGEAIKDETFVVTAASFIKPEIMLSAGKKKHGIVELS 487
            M+FLA   K +T  +   PL   ++  S  R   +      +P R  +T LSS   P T  ++  Q +PT F+S+FLQTLS RGYIHQCTDFKALDEACAAG+PIAAYLGFDATAPSLHVGSLLQIMILRHLQKSGHKPLVLMGGGTTKVGDPSGKDEARKLMTYE IQ NI SIS VFR+FL FG+G T+ALLVNND+WLS +RYLDFLRDYGQHFTINRMLNF+SVK+RL+RESPLSFLEFNYMILQAYDFLELSRR+ ARLQLGGSDQWGNIINGVELARKVDG+HLFGLTAPLMTTSDGKKMGKTASGAVWLKKELLSEY+YWQFWRNTNDADVTRFLKLFTE+PL+KIEELARLEGA INEAKVILADEATKLLHGEECL EIHATVANLF+GG ++ T ALPRVVV K+ELGDAG+QVAELFVRL+++KSKAEARRLIKGGGARLNGE IK+ETFVVT  SF KPEIMLSAGKKKHG+VELS
Sbjct:   55 MVFLAIGSKASTIQQSSTPLCAFAARLSLQRPIVSHRINLRSPQRSRLTALSSNAEPAT--ASANQAIPTDFESSFLQTLSARGYIHQCTDFKALDEACAAGKPIAAYLGFDATAPSLHVGSLLQIMILRHLQKSGHKPLVLMGGGTTKVGDPSGKDEARKLMTYETIQGNIASISEVFRRFLAFGDGATDALLVNNDEWLSPLRYLDFLRDYGQHFTINRMLNFESVKMRLDRESPLSFLEFNYMILQAYDFLELSRRYQARLQLGGSDQWGNIINGVELARKVDGRHLFGLTAPLMTTSDGKKMGKTASGAVWLKKELLSEYDYWQFWRNTNDADVTRFLKLFTEVPLEKIEELARLEGAGINEAKVILADEATKLLHGEECLKEIHATVANLFAGGSTEDTAALPRVVVTKSELGDAGVQVAELFVRLDLAKSKAEARRLIKGGGARLNGEQIKEETFVVTVDSFDKPEIMLSAGKKKHGMVELS 540
The following BLAST results are available for this feature:
BLAST of NO15G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22497.17.000e-21780.53tyrosyl-trna synthetase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00940NO15G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00940.1NO15G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00940.1.cds1NO15G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00940.1 ID=NO15G00940.1|Name=NO15G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp
ATGCTCTTTCTCGCCTTTGCCCGCAAGACTACGACTGCCTGGCGAATCCC
CTTATCCTACTCATCTTCCCTGTCCAGCACTATCCGTTGGGCAACCGCCT
TGTCCGACAAATCTCTTACACCCTCAAGACGCACTATTACAATCCTAAGC
AGCATTCCCGCCCCCGAGACGGATATCTCCGCCCAAGGCCAAGTATTACC
GACAAGTTTCAAATCCACGTTCCTCCAAACACTGAGTACGCGAGGCTACA
TCCATCAGTGCACGGATTTCAAAGCCTTGGACGAGGCGTGTGCGGCAGGG
GAACCTATCGCGGCTTACCTAGGATTTGATGCCACTGCCCCCAGCCTTCA
CGTGGGCAGCTTGCTTCAAATCATGATCCTACGACATCTGCAGAAATCGG
GGCATAAACCCTTGGTTCTCATGGGAGGGGGAACGACCAAGGTGGGGGAC
CCATCCGGGAAGGACGAGGCGAGGAAGCTGATGACCTATGAGGTGATTCA
GAGAAATATCGACTCCATCTCTGCGGTCTTTCGCCAATTTTTGAAGTTTG
GGGAGGGGCCGACGGAGGCACTGTTGGTGAACAACGACGATTGGCTGTCA
TCGATTCGGTATCTTGACTTTTTGAGGGACTACGGACAGCACTTCACGAT
CAATCGGATGTTGAATTTTGATAGTGTAAAGGTGAGGTTGGAGAGGGAGA
GTCCTCTGTCTTTCCTCGAGTTCAATTACATGATCTTGCAGGCGTACGAC
TTTTTGGAATTGTCAAGACGATTCAATGCTAGATTGCAGTTAGGCGGGTC
AGACCAGTGGGGAAACATCATTAATGGGGTGGAGCTGGCGAGGAAGGTGG
ATGGGAAGCATTTGTTTGGGCTGACGGCCCCCTTGATGACCACGTCGGAT
GGGAAGAAGATGGGGAAGACCGCGAGCGGAGCAGTCTGGCTGAAGAAAGA
GTTGTTGAGTGAGTATGAGTATTGGCAGTTTTGGCGGAACACGAACGACG
CGGACGTGACGCGTTTTCTGAAATTGTTTACCGAGATGCCTTTAGACAAG
ATTGAGGAGCTTGCACGATTGGAGGGAGCCAGGATCAATGAAGCAAAGGT
GATTCTGGCGGACGAGGCGACCAAATTGCTGCATGGAGAGGAATGTTTGT
CTGAGATTCATGCAACAGTCGCCAATTTATTCTCAGGCGGTGGCTCGGAT
AGCACGGAGGCCTTGCCGCGGGTGGTGGTGGGAAAGGCCGAGCTGGGCGA
CGCAGGCATGCAAGTGGCGGAATTATTTGTGCGTCTTGAGATGTCCAAGT
CCAAAGCGGAGGCCCGAAGGCTTATTAAGGGAGGAGGGGCACGGTTGAAT
GGGGAGGCGATCAAGGATGAGACCTTTGTAGTGACAGCAGCCAGCTTTAT
CAAGCCGGAAATTATGCTGAGCGCGGGCAAGAAAAAGCATGGGATTGTGG
AGCTCAGTAATTGA
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protein sequence of NO15G00940.1

>NO15G00940.1-protein ID=NO15G00940.1-protein|Name=NO15G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MLFLAFARKTTTAWRIPLSYSSSLSSTIRWATALSDKSLTPSRRTITILS
SIPAPETDISAQGQVLPTSFKSTFLQTLSTRGYIHQCTDFKALDEACAAG
EPIAAYLGFDATAPSLHVGSLLQIMILRHLQKSGHKPLVLMGGGTTKVGD
PSGKDEARKLMTYEVIQRNIDSISAVFRQFLKFGEGPTEALLVNNDDWLS
SIRYLDFLRDYGQHFTINRMLNFDSVKVRLERESPLSFLEFNYMILQAYD
FLELSRRFNARLQLGGSDQWGNIINGVELARKVDGKHLFGLTAPLMTTSD
GKKMGKTASGAVWLKKELLSEYEYWQFWRNTNDADVTRFLKLFTEMPLDK
IEELARLEGARINEAKVILADEATKLLHGEECLSEIHATVANLFSGGGSD
STEALPRVVVGKAELGDAGMQVAELFVRLEMSKSKAEARRLIKGGGARLN
GEAIKDETFVVTAASFIKPEIMLSAGKKKHGIVELSN*
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mRNA from alignment at chr15:284496..285959+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00940.1 ID=NO15G00940.1|Name=NO15G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp|location=Sequence derived from alignment at chr15:284496..285959+ (Nannochloropsis oceanica)
ATGCTCTTTCTCGCCTTTGCCCGCAAGACTACGACTGCCTGGCGAATCCC
CTTATCCTACTCATCTTCCCTGTCCAGCACTATCCGTTGGGCAACCGCCT
TGTCCGACAAATCTCTTACACCCTCAAGACGCACTATTACAATCCTAAGC
AGCATTCCCGCCCCCGAGACGGATATCTCCGCCCAAGGCCAAGTATTACC
GACAAGTTTCAAATCCACGTTCCTCCAAACACTGAGTACGCGAGGCTACA
TCCATCAGTGCACGGATTTCAAAGCCTTGGACGAGGCGTGTGCGGCAGGG
GAACCTATCGCGGCTTACCTAGGATTTGATGCCACTGCCCCCAGCCTTCA
CGTGGGCAGCTTGCTTCAAATCATGATCCTACGACATCTGCAGAAATCGG
GGCATAAACCCTTGGTTCTCATGGGAGGGGGAACGACCAAGGTGGGGGAC
CCATCCGGGAAGGACGAGGCGAGGAAGCTGATGACCTATGAGGTGATTCA
GAGAAATATCGACTCCATCTCTGCGGTCTTTCGCCAATTTTTGAAGTTTG
GGGAGGGGCCGACGGAGGCACTGTTGGTGAACAACGACGATTGGCTGTCA
TCGATTCGGTATCTTGACTTTTTGAGGGACTACGGACAGCACTTCACGAT
CAATCGGATGTTGAATTTTGATAGTGTAAAGGTGAGGTTGGAGAGGGAGA
GTCCTCTGTCTTTCCTCGAGTTCAATTACATGATCTTGCAGGCGTACGAC
TTTTTGGAATTGTCAAGACGATTCAATGCTAGATTGCAGTTAGGCGGGTC
AGACCAGTGGGGAAACATCATTAATGGGGTGGAGCTGGCGAGGAAGGTGG
ATGGGAAGCATTTGTTTGGGCTGACGGCCCCCTTGATGACCACGTCGGAT
GGGAAGAAGATGGGGAAGACCGCGAGCGGAGCAGTCTGGCTGAAGAAAGA
GTTGTTGAGTGAGTATGAGTATTGGCAGTTTTGGCGGAACACGAACGACG
CGGACGTGACGCGTTTTCTGAAATTGTTTACCGAGATGCCTTTAGACAAG
ATTGAGGAGCTTGCACGATTGGAGGGAGCCAGGATCAATGAAGCAAAGGT
GATTCTGGCGGACGAGGCGACCAAATTGCTGCATGGAGAGGAATGTTTGT
CTGAGATTCATGCAACAGTCGCCAATTTATTCTCAGGCGGTGGCTCGGAT
AGCACGGAGGCCTTGCCGCGGGTGGTGGTGGGAAAGGCCGAGCTGGGCGA
CGCAGGCATGCAAGTGGCGGAATTATTTGTGCGTCTTGAGATGTCCAAGT
CCAAAGCGGAGGCCCGAAGGCTTATTAAGGGAGGAGGGGCACGGTTGAAT
GGGGAGGCGATCAAGGATGAGACCTTTGTAGTGACAGCAGCCAGCTTTAT
CAAGCCGGAAATTATGCTGAGCGCGGGCAAGAAAAAGCATGGGATTGTGG
AGCTCAGTAATTGA
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Coding sequence (CDS) from alignment at chr15:284496..285959+

>NO15G00940.1 ID=NO15G00940.1|Name=NO15G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr15:284496..285959+ (Nannochloropsis oceanica)
ATGCTCTTTCTCGCCTTTGCCCGCAAGACTACGACTGCCTGGCGAATCCC
CTTATCCTACTCATCTTCCCTGTCCAGCACTATCCGTTGGGCAACCGCCT
TGTCCGACAAATCTCTTACACCCTCAAGACGCACTATTACAATCCTAAGC
AGCATTCCCGCCCCCGAGACGGATATCTCCGCCCAAGGCCAAGTATTACC
GACAAGTTTCAAATCCACGTTCCTCCAAACACTGAGTACGCGAGGCTACA
TCCATCAGTGCACGGATTTCAAAGCCTTGGACGAGGCGTGTGCGGCAGGG
GAACCTATCGCGGCTTACCTAGGATTTGATGCCACTGCCCCCAGCCTTCA
CGTGGGCAGCTTGCTTCAAATCATGATCCTACGACATCTGCAGAAATCGG
GGCATAAACCCTTGGTTCTCATGGGAGGGGGAACGACCAAGGTGGGGGAC
CCATCCGGGAAGGACGAGGCGAGGAAGCTGATGACCTATGAGGTGATTCA
GAGAAATATCGACTCCATCTCTGCGGTCTTTCGCCAATTTTTGAAGTTTG
GGGAGGGGCCGACGGAGGCACTGTTGGTGAACAACGACGATTGGCTGTCA
TCGATTCGGTATCTTGACTTTTTGAGGGACTACGGACAGCACTTCACGAT
CAATCGGATGTTGAATTTTGATAGTGTAAAGGTGAGGTTGGAGAGGGAGA
GTCCTCTGTCTTTCCTCGAGTTCAATTACATGATCTTGCAGGCGTACGAC
TTTTTGGAATTGTCAAGACGATTCAATGCTAGATTGCAGTTAGGCGGGTC
AGACCAGTGGGGAAACATCATTAATGGGGTGGAGCTGGCGAGGAAGGTGG
ATGGGAAGCATTTGTTTGGGCTGACGGCCCCCTTGATGACCACGTCGGAT
GGGAAGAAGATGGGGAAGACCGCGAGCGGAGCAGTCTGGCTGAAGAAAGA
GTTGTTGAGTGAGTATGAGTATTGGCAGTTTTGGCGGAACACGAACGACG
CGGACGTGACGCGTTTTCTGAAATTGTTTACCGAGATGCCTTTAGACAAG
ATTGAGGAGCTTGCACGATTGGAGGGAGCCAGGATCAATGAAGCAAAGGT
GATTCTGGCGGACGAGGCGACCAAATTGCTGCATGGAGAGGAATGTTTGT
CTGAGATTCATGCAACAGTCGCCAATTTATTCTCAGGCGGTGGCTCGGAT
AGCACGGAGGCCTTGCCGCGGGTGGTGGTGGGAAAGGCCGAGCTGGGCGA
CGCAGGCATGCAAGTGGCGGAATTATTTGTGCGTCTTGAGATGTCCAAGT
CCAAAGCGGAGGCCCGAAGGCTTATTAAGGGAGGAGGGGCACGGTTGAAT
GGGGAGGCGATCAAGGATGAGACCTTTGTAGTGACAGCAGCCAGCTTTAT
CAAGCCGGAAATTATGCTGAGCGCGGGCAAGAAAAAGCATGGGATTGTGG
AGCTCAGTAATTGA
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Synonyms
Publications