NO15G00620.1, NO15G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00620.1
Unique NameNO15G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2716
Alignment locationchr15:203071..206199 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:203071..206199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00620.1 vs.
Match: ORY39340.1 (hypothetical protein BCR33DRAFT_720170 [Rhizoclosmatium globosum])

HSP 1 Score: 153.3 bits (386), Expect = 1.700e-33
Identity = 80/275 (29.09%), Postives = 141/275 (51.27%), Query Frame = 0 
Query:   65 DFRPPPRWLLRLLALPLAMLNPPDARHLEHVIGCLDRN--EKVLLVGNQCLLGLDQFLFITLLYLHTGIFVRRLHDAMFGRVPMVSSILAWSGGVRATRKNTETMMQAGEPLLFFPGGLEESFKRRGEKKYSLQWGERLGFVMLAIKHEYTLIPFSSLGIEDAIWPVLHLPLQRLLRPFGTHR-------------------PPTSLPVLLPFNTLEKQYYLFGVPLSTKRFKGGYENTEACHQTFDVLRTRVYLLIEEGKRLREEDRGRYIFGR 319
            D++PP    +R ++ PL  L P     +E VI  + +N  +K++ +GN  + GLD    +  +YL TGI++R + D    ++P+   ++ W GGV+ T +N   +M+AG+P+L  PGG EE  K      Y+L W +R GF  L++KH Y ++P+  +G+ED +     +PL+      G HR                   P   LPV+ P+ + +K Y +FG  +    +    ++ E+ +   + +R  V   I +G++++  D  RY++ R
Sbjct:   47 DYKPPSILFVRFVSAPLRWLLPLQDEGMEEVINIIKQNPKQKLIFIGNHLIYGLDVVFLVIHIYLETGIYLRGIADTFHFQIPIHKHLVQWFGGVKGTVENCTKLMEAGQPILILPGGAEEVVKDSRIPPYTLIWKDRTGFAKLSVKHGYKIVPYGIVGLEDMVVHAFSIPLKPFFAILGDHRSKDKVFNPAAHKTSIPPPVPDMRLPVIYPYLSFQKSYLVFGEIVDASEY--DLDDIESIYALRNRVRNEVETSIRKGRQIQFVDPQRYLWRR 319
The following BLAST results are available for this feature:
BLAST of NO15G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ORY39340.11.700e-3329.09hypothetical protein BCR33DRAFT_720170 [Rhizoclosm... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00620NO15G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00620.1NO15G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00620.1.cds1NO15G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00620.1.cds2NO15G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00620.1.cds3NO15G00620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00620.1.cds4NO15G00620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00620.1 ID=NO15G00620.1|Name=NO15G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2716bp
CGTCCTCGTCCTCGTCCTCACAGGCGGCGGCTACAGCCGTGGCGGCATCC
AGCTCCTCTTCTCGCTCCACCACACCAAGCAGCCCCTCATTGACTTCCGT
CAAAGTCACATCAGGAGAGGCCGCAATATGTGATGCGTAGGGAAGCCACG
AATTATTGATGTTCATGGCAGTATGATCGTCATTGGATAGGACGACGGTA
ATTTCGGTATCCATCAGCCCGTCTCCACCAGCGCGGCCCGCGTTGTCTTC
GTCGTCGTCGGGGAGGGAGGACGAGGACGCCAGCTCCAGAAGATCAGTAT
CCATAGCTGCGGCTCCTGAGAAGGATCCTGGTCCTTGAAACTTAACGTCG
GTATTTAATTATGTGTTGCCTCCGTCGAGAAAGCGTAAGTCTGTATAGGT
ATGGGTAGCAGGGTTTCGAGACTGGAACTGAGGGGTGCGTTTTCAGATAT
GAGGACAGGCAGAGGCCTTGAGCGATGACATTCTTATTGAACCCTTTTTC
GATTTACGCGCAGCATGCATGTATAGGTGAGCGGGACGAGGTTGCCACCG
AGGGTTGGAGCATAATGGACTGGAGGGTGGTGCCGATTAGGGGGGGATCG
GTGAGAAATACAAGAGAAACGATATGAGGCCAGGACGTGCGTCCGAGATT
ATTTGGCTAAAGCTGTGCGTATCTGTCCGTGGGTGTGTCGGAAAAGGCAC
AGTGCGACCCAAAGACTGGAGCATAGGTGGCCTCATGTGATCAATTTCTG
ACTCTGGAGGGGGAGCACGCGACAACCATGTCATCCAGCACAAGCTGTGG
GAGCCGTGAGTTCTTGAGCTCTTGATGCTGCTGCCGCCCCCAGTGATACT
TCTGCTTCTGTTGGGCGTTGCCCTCGGGCTTCTGTTACATTGTGCTTGTG
TGGGCGTGGCAAGCAGGGGAAGTTGTCGATGAGACTTCCATGATCGAAAC
ATCGCCGACCTCGCGCGTTATATTATTCTACGCTCCTAAATTTGCTTCAC
TCCGCTCATCGCGCCCCTTACATTAGCGCACCAACACAGGCAAAGACTCT
AGGACGGTTGCCCACGTAGTAAATGCTGGGCATGGGGCTGATTTGTATCG
CACTTTGTCGTCATGGCAAAAGGAAAGACCAGCGAAGCACCTCGAGGCAA
AGCTTTGAATGTCAGAACTTCCATGCCCTTGATTCTCTCTCTCTTTTTAT
GGTATCTGGCTTGCTTGCACAGCTGTACATCATTCTCATAAATACTCAGC
CTCCATGCTGGGCATTCACTCTTGTCCTCATCCCCACCATCCCCACCATC
CCACCACGCACTACCACAGGCCATCCAGGAGGTCGGCCCCTTGATCATGT
CACAGCAGCCTTTCCCCTCGCTCTGGCAGCGTTGCATGTCCTACTTCCTC
TTCCCCTTCCTCGCCCCCTTTATTTTCGCGCAATGGATCTGGCACTTACT
CCCTTTTACCGACAAGACCCGAGAAGGGAAGAAAAAACGACGTAGCAATG
GCAACTATAGCATCAGCAAGAACAGTAGCAACATCACCGACTTTCGTCCT
CCTCCCCGCTGGCTTTTGCGTCTGCTGGCGTTGCCCCTTGCCATGCTGAA
TCCACCGGATGCCCGGCATTTGGAACACGTGATTGGGTGCTTGGATCGGA
ACGAGAAAGTCTTGTTGGTCGGGAATCAGTGCTTATTGGGTCTAGACCAA
TTTCTGTTCATCACCCTGCTTTACCTCCACACGGGGATCTTTGTCCGCCG
TCTGCATGACGCCATGTTCGGGCGGGTGCCTATGGTCTCTTCCATATTGG
CCTGGTCGGGAGGAGTCCGCGCAACACGGAAGAATACGGAGACCATGATG
CAGGCGGGAGAGCCTCTTCTCTTCTTCCCGGGCGGTTTGGAGGAGAGTTT
CAAACGGAGAGGGGAGAAAAAGTACAGTCTGCAGTGGGGAGAGAGGCTTG
GGTTCGTCATGCTGGCAATCAAGCATGAATACACCCTCATCCCCTTCTCC
TCTCTCGGGATAGAGGATGCCATCTGGCCCGTCCTCCACCTCCCCCTCCA
ACGCCTCCTCCGCCCTTTTGGGACCCACCGACCCCCTACCTCCCTCCCCG
TCCTCCTTCCTTTCAACACTCTTGAGAAGCAATATTATTTGTTCGGCGTG
CCTCTGTCGACCAAGAGGTTCAAGGGGGGCTACGAGAACACAGAGGCGTG
CCACCAAACTTTTGATGTTTTACGTACCCGTGTTTATCTGTTGATAGAAG
AGGGAAAGAGACTGAGGGAAGAGGATAGGGGGAGATATATCTTTGGGAGA
GCATTTGAAATGTTAGGGTGGGGGGTTTGGTGGAGAAAGGGGGAAGGGAG
AGAGGAAGGGAGGGGGGGGGTGGGGGGAGTGATGGCTGGGATAGGGACCC
TGTTGGGGCCGGCGGGAGGGAGAGGGGGACGGAGGGCGGAGAGTGAGAGA
GGAAGAAGTGGCGAAATGTTAAGCAGCAGCCGCAAGAAGGAAGGGAGGGA
GAAGGAGGGGAGGAGAGAAGAGTATGGGCAGCAACAGCAAGAGCAGGACT
CGCTGCGACAACGAAAGGCACGGGCTGGGGCAGCGGCGTCGGCGACGATA
ATGGGCTAGGATGCCACTAGTGAAGGAAACGCTTCAAAAAATTCGAACGA
AAATTTTATTTATGAAAATACGCGACAATAGAACAAGGAAACAAAAATTA
GAGACCCACAGCAGGA
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protein sequence of NO15G00620.1

>NO15G00620.1-protein ID=NO15G00620.1-protein|Name=NO15G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MSQQPFPSLWQRCMSYFLFPFLAPFIFAQWIWHLLPFTDKTREGKKKRRS
NGNYSISKNSSNITDFRPPPRWLLRLLALPLAMLNPPDARHLEHVIGCLD
RNEKVLLVGNQCLLGLDQFLFITLLYLHTGIFVRRLHDAMFGRVPMVSSI
LAWSGGVRATRKNTETMMQAGEPLLFFPGGLEESFKRRGEKKYSLQWGER
LGFVMLAIKHEYTLIPFSSLGIEDAIWPVLHLPLQRLLRPFGTHRPPTSL
PVLLPFNTLEKQYYLFGVPLSTKRFKGGYENTEACHQTFDVLRTRVYLLI
EEGKRLREEDRGRYIFGRAFEMLGWGVWWRKGEGREEGRGGVGGVMAGIG
TLLGPAGGRGGRRAESERGRSGEMLSSSRKKEGREKEGRREEYGQQQQEQ
DSLRQRKARAGAAASATIMG*
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mRNA from alignment at chr15:203071..206199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00620.1 ID=NO15G00620.1|Name=NO15G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=3129bp|location=Sequence derived from alignment at chr15:203071..206199+ (Nannochloropsis oceanica)
CGTCCTCGTCCTCGTCCTCACAGGCGGCGGCTACAGCCGTGGCGGCATCC
AGCTCCTCTTCTCGCTCCACCACACCAAGCAGCCCCTCATTGACTTCCGT
CAAAGTCACATCAGGAGAGGCCGCAATATGTGATGCGTAGGGAAGCCACG
AATTATTGATGTTCATGGCAGTATGATCGTCATTGGATAGGACGACGGTA
ATTTCGGTATCCATCAGCCCGTCTCCACCAGCGCGGCCCGCGTTGTCTTC
GTCGTCGTCGGGGAGGGAGGACGAGGACGCCAGCTCCAGAAGATCAGTAT
CCATAGCTGCGGCTCCTGAGAAGGATCCTGGTCCTTGAAACTTAACGTCG
GTATTTAATTATGTGTTGCCTCCGTCGAGAAAGCGTAAGTCTGTATAGGT
ATGGGTAGCAGGGTTTCGAGACTGGAACTGAGGGGTGCGTTTTCAGATAT
GAGGACAGGCAGAGGCCTTGAGCGATGACATTCTTATTGAACCCTTTTTC
GATTTACGCGCAGCATGCATGTATAGGTGAGCGGGACGAGGTTGCCACCG
AGGGTTGGAGCATAATGGACTGGAGGGTGGTGCCGATTAGGGGGGGATCG
GTGAGAAATACAAGAGAAACGATATGAGGCCAGGACGTGCGTCCGAGATT
ATTTGGCTAAAGCTGTGCGTATCTGTCCGTGGGTGTGTCGGAAAAGGCAC
AGTGCGACCCAAAGACTGGAGCATAGGTGGCCTCATGTGATCAATTTCTG
ACTCTGGAGGGGGAGCACGCGACAACCATGTCATCCAGCACAAGCTGTGG
GAGCCGTGAGTTCTTGAGCTCTTGATGCTGCTGCCGCCCCCAGTGATACT
TCTGCTTCTGTTGGGCGTTGCCCTCGGGCTTCTGTTACATTGTGCTTGTG
TGGGCGTGGCAAGCAGGGGAAGTTGTCGATGAGACTTCCATGATCGAAAC
ATCGCCGACCTCGCGCGTTATATTATTCTACGCTCCTAAATTTGCTTCAC
TCCGCTCATCGCGCCCCTTACATTAGCGCACCAACACAGGCAAAGACTCT
AGGACGGTTGCCCACGTAGTAAATGCTGGGCATGGGGCTGATTTGTATCG
CACTTTGTCGTCATGGCAAAAGGAAAGACCAGCGAAGCACCTCGAGGCAA
AGCTTTGAATGTCAGAACTTCCATGCCCTTGATTCTCTCTCTCTTTTTAT
GGTATCTGGCTTGCTTGCACAGCTGTACATCATTCTCATAAATACTCAGC
CTCCATGCTGGGCATTCACTCTTGTCCTCATCCCCACCATCCCCACCATC
CCACCACGCACTACCACAGGCCATCCAGGAGGTCGGCCCCTTGATCATGT
CACAGCAGCCTTTCCCCTCGCTCTGGCAGCGTTGCATGTCCTACTTCCTC
TTCCCCTTCCTCGCCCCCTTTATTTTCGCGCAATGGATCTGGCACTTACT
CCCTTTTACCGACAAGACCCGAGAAGGGAAGAAAAAACGACGTAGCAATG
GCAACTATAGCATCAGCAAGAACAGTAGCAACATCACCGACTTTCGTCCT
CCTCCCCGCTGGCTTTTGCGTCTGCTGGCGTTGCCCCTTGCCATGCTGAA
TCCACCGGATGCCCGGCATTTGGAACACGTGATTGGGTGCTTGGATCGGA
ACGAGAAAGTCTTGTTGGTCGGGAATCAGGTGAGTGGTTAGGCAGGGGAG
AAGGGATTAAGGGAAGGAAAGGAAGGGAGAGAGTATTTCGAACTCCATAG
CTAATCTCTTCCTTTTCTACCCCCCTGCCTCCCATAATTTTTAGTGCTTA
TTGGGTCTAGACCAATTTCTGTTCATCACCCTGCTTTACCTCCACACGGG
GATCTTTGTCCGCCGTCTGCATGACGCCATGTTCGGGCGGGTGCCTATGG
TCTCTTCCATATTGGCCTGGTCGGGAGGAGTCCGCGCAACACGGAAGAAT
ACGGAGACCATGATGCGTACGTCCTCGTCCTCGTCCTCTCTCCCGAGCGT
CTTGGGCGTGTATTTAATATCGTCCACTACCGCCCTCTCACGTATCCCTG
TCCCTGCTCCACACACAAGCACCACACTCACATAACCCCACCACACATAC
AAAAATAACCATTCCAGAGGCGGGAGAGCCTCTTCTCTTCTTCCCGGGCG
GTTTGGAGGAGAGTTTCAAACGGAGAGGGGAGAAAAAGTACAGTCTGCAG
TGGGGAGAGAGGCTTGGGTTCGTCATGCTGGCAATCAAGCATGAATGTGA
GGAAGAGGGGGGGGGGGGGAGAGGGAGCGCAGCTGGGAGGAAAGAGGGGA
ATGAGAGGGAAGATATGCCATATCAAAAGTTCACCTTTCTATCCTTTCGT
CCCTTCTTCCCCTCTTTATATCCCTCCCTCTCCCCCTCCTCAGACACCCT
CATCCCCTTCTCCTCTCTCGGGATAGAGGATGCCATCTGGCCCGTCCTCC
ACCTCCCCCTCCAACGCCTCCTCCGCCCTTTTGGGACCCACCGACCCCCT
ACCTCCCTCCCCGTCCTCCTTCCTTTCAACACTCTTGAGAAGCAATATTA
TTTGTTCGGCGTGCCTCTGTCGACCAAGAGGTTCAAGGGGGGCTACGAGA
ACACAGAGGCGTGCCACCAAACTTTTGATGTTTTACGTACCCGTGTTTAT
CTGTTGATAGAAGAGGGAAAGAGACTGAGGGAAGAGGATAGGGGGAGATA
TATCTTTGGGAGAGCATTTGAAATGTTAGGGTGGGGGGTTTGGTGGAGAA
AGGGGGAAGGGAGAGAGGAAGGGAGGGGGGGGGTGGGGGGAGTGATGGCT
GGGATAGGGACCCTGTTGGGGCCGGCGGGAGGGAGAGGGGGACGGAGGGC
GGAGAGTGAGAGAGGAAGAAGTGGCGAAATGTTAAGCAGCAGCCGCAAGA
AGGAAGGGAGGGAGAAGGAGGGGAGGAGAGAAGAGTATGGGCAGCAACAG
CAAGAGCAGGACTCGCTGCGACAACGAAAGGCACGGGCTGGGGCAGCGGC
GTCGGCGACGATAATGGGCTAGGATGCCACTAGTGAAGGAAACGCTTCAA
AAAATTCGAACGAAAATTTTATTTATGAAAATACGCGACAATAGAACAAG
GAAACAAAAATTAGAGACCCACAGCAGGA
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Coding sequence (CDS) from alignment at chr15:203071..206199+

>NO15G00620.1 ID=NO15G00620.1|Name=NO15G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr15:203071..206199+ (Nannochloropsis oceanica)
ATGTCACAGCAGCCTTTCCCCTCGCTCTGGCAGCGTTGCATGTCCTACTT
CCTCTTCCCCTTCCTCGCCCCCTTTATTTTCGCGCAATGGATCTGGCACT
TACTCCCTTTTACCGACAAGACCCGAGAAGGGAAGAAAAAACGACGTAGC
AATGGCAACTATAGCATCAGCAAGAACAGTAGCAACATCACCGACTTTCG
TCCTCCTCCCCGCTGGCTTTTGCGTCTGCTGGCGTTGCCCCTTGCCATGC
TGAATCCACCGGATGCCCGGCATTTGGAACACGTGATTGGGTGCTTGGAT
CGGAACGAGAAAGTCTTGTTGGTCGGGAATCAGTGCTTATTGGGTCTAGA
CCAATTTCTGTTCATCACCCTGCTTTACCTCCACACGGGGATCTTTGTCC
GCCGTCTGCATGACGCCATGTTCGGGCGGGTGCCTATGGTCTCTTCCATA
TTGGCCTGGTCGGGAGGAGTCCGCGCAACACGGAAGAATACGGAGACCAT
GATGCAGGCGGGAGAGCCTCTTCTCTTCTTCCCGGGCGGTTTGGAGGAGA
GTTTCAAACGGAGAGGGGAGAAAAAGTACAGTCTGCAGTGGGGAGAGAGG
CTTGGGTTCGTCATGCTGGCAATCAAGCATGAATACACCCTCATCCCCTT
CTCCTCTCTCGGGATAGAGGATGCCATCTGGCCCGTCCTCCACCTCCCCC
TCCAACGCCTCCTCCGCCCTTTTGGGACCCACCGACCCCCTACCTCCCTC
CCCGTCCTCCTTCCTTTCAACACTCTTGAGAAGCAATATTATTTGTTCGG
CGTGCCTCTGTCGACCAAGAGGTTCAAGGGGGGCTACGAGAACACAGAGG
CGTGCCACCAAACTTTTGATGTTTTACGTACCCGTGTTTATCTGTTGATA
GAAGAGGGAAAGAGACTGAGGGAAGAGGATAGGGGGAGATATATCTTTGG
GAGAGCATTTGAAATGTTAGGGTGGGGGGTTTGGTGGAGAAAGGGGGAAG
GGAGAGAGGAAGGGAGGGGGGGGGTGGGGGGAGTGATGGCTGGGATAGGG
ACCCTGTTGGGGCCGGCGGGAGGGAGAGGGGGACGGAGGGCGGAGAGTGA
GAGAGGAAGAAGTGGCGAAATGTTAAGCAGCAGCCGCAAGAAGGAAGGGA
GGGAGAAGGAGGGGAGGAGAGAAGAGTATGGGCAGCAACAGCAAGAGCAG
GACTCGCTGCGACAACGAAAGGCACGGGCTGGGGCAGCGGCGTCGGCGAC
GATAATGGGCTAG
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Synonyms
Publications