NO15G00530.1, NO15G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00530.1
Unique NameNO15G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2007
Alignment locationchr15:172832..174838 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:172832..174838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00530.1 vs.
Match: WP_092787662.1 (recombinase RecA [Rhodospira trueperi]; SDE86625.1 recombination protein RecA [Rhodospira trueperi])

HSP 1 Score: 273.9 bits (699), Expect = 1.100e-69
Identity = 150/335 (44.78%), Postives = 219/335 (65.37%), Query Frame = 0 
Query:   45 EKQIALSATIKRLKRKHGQGALMRLGDQNPLFDSESVISTGSRALDHALGIGGLPQGHLVEMSGPQHSGKTTLALHVIAEAQKRGGTCVFVNTEQALDPAYARRVGVDVENLFISQPDDSEQGLDIIEQLVKSHAVHCVVMDSLTTLLLDAEVERDVGNRN--REERVLSQALRRLTRSAAKSKCLLVCLHH----------SGVHNKGAKVLHLRSAVRLAFVRGQTLRGETHDVGYRIRVKVVKNKVARPFGTSEIDVLFDKGIDRLGELLDIGVALGLVDKKKAWFVLKDLAGGKGGRMGAEGSLVMGQGREKTRFFLQERPELVSMLENAV 368
            +KQ AL A + +++R  G+G++MRLG ++ + + ESV STGS  LD ALGIGGLP+G +VE+ GP+ SGKTTLA+HV+A+AQKRGGTC FV+ E A DP+YAR++G+D++NL +SQPD  EQ L+I + LV+S A+  +V+DS+  L+  AE+E ++G+ +   + R++SQALR+LT S A+S  L++ ++           S     G   L   S+VRL   R   ++ +   VG + RVKVVKNKVA PF T E D+L+ +GI +LGE+LD+GV   +V+K  AWF              +  S  +GQGRE  R FL++ P +   +ENA+
Sbjct:   15 DKQKALDAAVSQIERSFGKGSIMRLGQRDRIVEIESV-STGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLAMHVVAQAQKRGGTCGFVDAEHAFDPSYARKLGIDLDNLLMSQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKLTASVARSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNKDETVGNQTRVKVVKNKVAPPFKTVEFDILYGEGISKLGEILDLGVRASIVEKSGAWF--------------SYNSQRIGQGRENARQFLRDNPAIAEEIENAI 334
The following BLAST results are available for this feature:
BLAST of NO15G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_092787662.11.100e-6944.78recombinase RecA [Rhodospira trueperi]; SDE86625.1... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00530NO15G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00530.1NO15G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00530.1.cds1NO15G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00530.1 ID=NO15G00530.1|Name=NO15G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp
CTCTTGCTTACAACCTTGCTAATTCAGGAGCATATGCACATCAAAACTAC
AGGTTTTTTTACGTTTTGGGCGGGGTTGCGTCGTGGTTCCTATTTGTTCA
TTAGAAGCTTACCGGCGCGCCTCCTCATCACCAGCCTCCTCCCCCAGTCG
AGAAGCCTCCTTACACGACACGGAACGTGAAAAAGCCACCAAAAAATGTT
GCGGAGGCAAGCCCTCTTCCTAAATCGCACTTGCACATCCCTTATATACC
ATAGCAGTAGGCGTGCTCTTGCCTCCAGCGCCAGTGATGCTTCGTCGCCC
TCCTCCGCATTTCCCTTTTTTTCGACGGAAAAACAAATCGCCTTGTCCGC
TACTATCAAGCGCCTCAAACGAAAGCATGGCCAAGGGGCTCTCATGAGGC
TTGGGGACCAAAATCCTCTCTTTGATAGCGAATCTGTCATTTCCACTGGC
TCTCGAGCCCTTGACCACGCGTTAGGCATCGGTGGGCTGCCTCAGGGCCA
CCTCGTAGAGATGTCTGGCCCGCAGCACTCAGGCAAGACTACCCTTGCAC
TACACGTCATTGCTGAAGCACAAAAACGTGGCGGAACCTGTGTGTTCGTT
AATACCGAACAGGCCTTGGACCCTGCATATGCGCGGCGGGTAGGGGTGGA
CGTCGAGAACCTCTTCATCTCTCAACCGGATGATAGCGAGCAAGGTTTGG
ACATTATCGAACAACTCGTCAAGTCCCATGCAGTGCACTGCGTTGTTATG
GATAGTCTCACTACATTATTGCTGGATGCAGAGGTAGAGAGGGACGTGGG
CAACAGAAATCGAGAAGAAAGGGTGCTCAGTCAGGCCTTACGGAGGCTTA
CGCGCTCAGCAGCAAAGTCGAAATGCCTCCTTGTCTGCCTCCACCATAGC
GGGGTCCACAACAAAGGCGCAAAAGTCCTGCATTTGCGGAGTGCCGTGCG
GCTGGCATTTGTGCGGGGACAGACGCTCCGGGGCGAGACTCATGATGTCG
GATATCGGATACGAGTTAAGGTAGTTAAGAATAAGGTCGCGCGTCCTTTT
GGCACTTCAGAAATCGACGTGCTGTTCGACAAGGGCATAGACCGATTAGG
TGAGCTGCTAGACATAGGAGTGGCCCTAGGACTGGTGGATAAGAAGAAGG
CGTGGTTTGTGCTGAAGGATCTGGCAGGGGGGAAGGGCGGGAGGATGGGA
GCGGAGGGATCGTTGGTCATGGGACAAGGACGGGAAAAGACAAGATTTTT
TTTGCAGGAGCGTCCGGAGTTAGTGTCAATGTTGGAAAATGCTGTTGGGG
ACAGGCTGAAGACGATGGACTCGTACATGAGGACTTTGCCGGCATCGAAG
AGTCGCATTCGTGAAGAGGAGGAGGAGGAAGAAGAAGAGAGGGAGGTTGA
GGTGAGAAATTTGGCAGAAGCGACGGCAGATGCCGAGGCTGTGATGAACC
AGGTAGAGCAAGAAAGGGAGGGGGCATACGCATACCCATTCGAGCAGAAA
TCGGAAAGGGGTCTCCTTTATCGCGCTGGAGGGAAAGACAGCGCTAACGC
ACAGGACCCCTATGTTATCGCTCCGGCGGAGGAAAGATGGAATACTAATG
GACCGACAAGGATGATGGACACTATTGAACATTTTGGCGCAGGTGCGGGC
GGAGAGGGTGTTGATTTAGAAATAGATTACCTGACGGGCGAGGTGAAGAA
TACCAAGGCAGCAGCAGCAGTGGAAGCAGCAGCAGCAGCAGCAGCAGCGG
CGGGGCAGAAGAGGCGCGGAGAAGGGAGCTCGTGAAGCAGTGGATGGAAA
GACAAGGAAATCGAAAACCCTTTTAAAACCTCCTCCACGCTCACAAGTGT
TAGGCGAGTGTGCGTCATTGCATAAACGTAATGTAAAGAAGAGACGAAGA
CCTGGGAAATAACTACAGACTAATGTTTACAACGCGCGGAGGGATGCAAG
GCGGCAAAAGTGATTATTCATGACAACGACAAGAATGAAAACGTGACGAT
GATTGAA
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protein sequence of NO15G00530.1

>NO15G00530.1-protein ID=NO15G00530.1-protein|Name=NO15G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MLRRQALFLNRTCTSLIYHSSRRALASSASDASSPSSAFPFFSTEKQIAL
SATIKRLKRKHGQGALMRLGDQNPLFDSESVISTGSRALDHALGIGGLPQ
GHLVEMSGPQHSGKTTLALHVIAEAQKRGGTCVFVNTEQALDPAYARRVG
VDVENLFISQPDDSEQGLDIIEQLVKSHAVHCVVMDSLTTLLLDAEVERD
VGNRNREERVLSQALRRLTRSAAKSKCLLVCLHHSGVHNKGAKVLHLRSA
VRLAFVRGQTLRGETHDVGYRIRVKVVKNKVARPFGTSEIDVLFDKGIDR
LGELLDIGVALGLVDKKKAWFVLKDLAGGKGGRMGAEGSLVMGQGREKTR
FFLQERPELVSMLENAVGDRLKTMDSYMRTLPASKSRIREEEEEEEEERE
VEVRNLAEATADAEAVMNQVEQEREGAYAYPFEQKSERGLLYRAGGKDSA
NAQDPYVIAPAEERWNTNGPTRMMDTIEHFGAGAGGEGVDLEIDYLTGEV
KNTKAAAAVEAAAAAAAAAGQKRRGEGSS*
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mRNA from alignment at chr15:172832..174838+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00530.1 ID=NO15G00530.1|Name=NO15G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at chr15:172832..174838+ (Nannochloropsis oceanica)
CTCTTGCTTACAACCTTGCTAATTCAGGAGCATATGCACATCAAAACTAC
AGGTTTTTTTACGTTTTGGGCGGGGTTGCGTCGTGGTTCCTATTTGTTCA
TTAGAAGCTTACCGGCGCGCCTCCTCATCACCAGCCTCCTCCCCCAGTCG
AGAAGCCTCCTTACACGACACGGAACGTGAAAAAGCCACCAAAAAATGTT
GCGGAGGCAAGCCCTCTTCCTAAATCGCACTTGCACATCCCTTATATACC
ATAGCAGTAGGCGTGCTCTTGCCTCCAGCGCCAGTGATGCTTCGTCGCCC
TCCTCCGCATTTCCCTTTTTTTCGACGGAAAAACAAATCGCCTTGTCCGC
TACTATCAAGCGCCTCAAACGAAAGCATGGCCAAGGGGCTCTCATGAGGC
TTGGGGACCAAAATCCTCTCTTTGATAGCGAATCTGTCATTTCCACTGGC
TCTCGAGCCCTTGACCACGCGTTAGGCATCGGTGGGCTGCCTCAGGGCCA
CCTCGTAGAGATGTCTGGCCCGCAGCACTCAGGCAAGACTACCCTTGCAC
TACACGTCATTGCTGAAGCACAAAAACGTGGCGGAACCTGTGTGTTCGTT
AATACCGAACAGGCCTTGGACCCTGCATATGCGCGGCGGGTAGGGGTGGA
CGTCGAGAACCTCTTCATCTCTCAACCGGATGATAGCGAGCAAGGTTTGG
ACATTATCGAACAACTCGTCAAGTCCCATGCAGTGCACTGCGTTGTTATG
GATAGTCTCACTACATTATTGCTGGATGCAGAGGTAGAGAGGGACGTGGG
CAACAGAAATCGAGAAGAAAGGGTGCTCAGTCAGGCCTTACGGAGGCTTA
CGCGCTCAGCAGCAAAGTCGAAATGCCTCCTTGTCTGCCTCCACCATAGC
GGGGTCCACAACAAAGGCGCAAAAGTCCTGCATTTGCGGAGTGCCGTGCG
GCTGGCATTTGTGCGGGGACAGACGCTCCGGGGCGAGACTCATGATGTCG
GATATCGGATACGAGTTAAGGTAGTTAAGAATAAGGTCGCGCGTCCTTTT
GGCACTTCAGAAATCGACGTGCTGTTCGACAAGGGCATAGACCGATTAGG
TGAGCTGCTAGACATAGGAGTGGCCCTAGGACTGGTGGATAAGAAGAAGG
CGTGGTTTGTGCTGAAGGATCTGGCAGGGGGGAAGGGCGGGAGGATGGGA
GCGGAGGGATCGTTGGTCATGGGACAAGGACGGGAAAAGACAAGATTTTT
TTTGCAGGAGCGTCCGGAGTTAGTGTCAATGTTGGAAAATGCTGTTGGGG
ACAGGCTGAAGACGATGGACTCGTACATGAGGACTTTGCCGGCATCGAAG
AGTCGCATTCGTGAAGAGGAGGAGGAGGAAGAAGAAGAGAGGGAGGTTGA
GGTGAGAAATTTGGCAGAAGCGACGGCAGATGCCGAGGCTGTGATGAACC
AGGTAGAGCAAGAAAGGGAGGGGGCATACGCATACCCATTCGAGCAGAAA
TCGGAAAGGGGTCTCCTTTATCGCGCTGGAGGGAAAGACAGCGCTAACGC
ACAGGACCCCTATGTTATCGCTCCGGCGGAGGAAAGATGGAATACTAATG
GACCGACAAGGATGATGGACACTATTGAACATTTTGGCGCAGGTGCGGGC
GGAGAGGGTGTTGATTTAGAAATAGATTACCTGACGGGCGAGGTGAAGAA
TACCAAGGCAGCAGCAGCAGTGGAAGCAGCAGCAGCAGCAGCAGCAGCGG
CGGGGCAGAAGAGGCGCGGAGAAGGGAGCTCGTGAAGCAGTGGATGGAAA
GACAAGGAAATCGAAAACCCTTTTAAAACCTCCTCCACGCTCACAAGTGT
TAGGCGAGTGTGCGTCATTGCATAAACGTAATGTAAAGAAGAGACGAAGA
CCTGGGAAATAACTACAGACTAATGTTTACAACGCGCGGAGGGATGCAAG
GCGGCAAAAGTGATTATTCATGACAACGACAAGAATGAAAACGTGACGAT
GATTGAA
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Coding sequence (CDS) from alignment at chr15:172832..174838+

>NO15G00530.1 ID=NO15G00530.1|Name=NO15G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr15:172832..174838+ (Nannochloropsis oceanica)
ATGTTGCGGAGGCAAGCCCTCTTCCTAAATCGCACTTGCACATCCCTTAT
ATACCATAGCAGTAGGCGTGCTCTTGCCTCCAGCGCCAGTGATGCTTCGT
CGCCCTCCTCCGCATTTCCCTTTTTTTCGACGGAAAAACAAATCGCCTTG
TCCGCTACTATCAAGCGCCTCAAACGAAAGCATGGCCAAGGGGCTCTCAT
GAGGCTTGGGGACCAAAATCCTCTCTTTGATAGCGAATCTGTCATTTCCA
CTGGCTCTCGAGCCCTTGACCACGCGTTAGGCATCGGTGGGCTGCCTCAG
GGCCACCTCGTAGAGATGTCTGGCCCGCAGCACTCAGGCAAGACTACCCT
TGCACTACACGTCATTGCTGAAGCACAAAAACGTGGCGGAACCTGTGTGT
TCGTTAATACCGAACAGGCCTTGGACCCTGCATATGCGCGGCGGGTAGGG
GTGGACGTCGAGAACCTCTTCATCTCTCAACCGGATGATAGCGAGCAAGG
TTTGGACATTATCGAACAACTCGTCAAGTCCCATGCAGTGCACTGCGTTG
TTATGGATAGTCTCACTACATTATTGCTGGATGCAGAGGTAGAGAGGGAC
GTGGGCAACAGAAATCGAGAAGAAAGGGTGCTCAGTCAGGCCTTACGGAG
GCTTACGCGCTCAGCAGCAAAGTCGAAATGCCTCCTTGTCTGCCTCCACC
ATAGCGGGGTCCACAACAAAGGCGCAAAAGTCCTGCATTTGCGGAGTGCC
GTGCGGCTGGCATTTGTGCGGGGACAGACGCTCCGGGGCGAGACTCATGA
TGTCGGATATCGGATACGAGTTAAGGTAGTTAAGAATAAGGTCGCGCGTC
CTTTTGGCACTTCAGAAATCGACGTGCTGTTCGACAAGGGCATAGACCGA
TTAGGTGAGCTGCTAGACATAGGAGTGGCCCTAGGACTGGTGGATAAGAA
GAAGGCGTGGTTTGTGCTGAAGGATCTGGCAGGGGGGAAGGGCGGGAGGA
TGGGAGCGGAGGGATCGTTGGTCATGGGACAAGGACGGGAAAAGACAAGA
TTTTTTTTGCAGGAGCGTCCGGAGTTAGTGTCAATGTTGGAAAATGCTGT
TGGGGACAGGCTGAAGACGATGGACTCGTACATGAGGACTTTGCCGGCAT
CGAAGAGTCGCATTCGTGAAGAGGAGGAGGAGGAAGAAGAAGAGAGGGAG
GTTGAGGTGAGAAATTTGGCAGAAGCGACGGCAGATGCCGAGGCTGTGAT
GAACCAGGTAGAGCAAGAAAGGGAGGGGGCATACGCATACCCATTCGAGC
AGAAATCGGAAAGGGGTCTCCTTTATCGCGCTGGAGGGAAAGACAGCGCT
AACGCACAGGACCCCTATGTTATCGCTCCGGCGGAGGAAAGATGGAATAC
TAATGGACCGACAAGGATGATGGACACTATTGAACATTTTGGCGCAGGTG
CGGGCGGAGAGGGTGTTGATTTAGAAATAGATTACCTGACGGGCGAGGTG
AAGAATACCAAGGCAGCAGCAGCAGTGGAAGCAGCAGCAGCAGCAGCAGC
AGCGGCGGGGCAGAAGAGGCGCGGAGAAGGGAGCTCGTGA
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Synonyms
Publications