NO15G00110.1, NO15G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00110.1
Unique NameNO15G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr15:26100..27449 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:26100..27449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00110.1 vs.
Match: OLP90704.1 (Calcium-dependent protein kinase 15 [Symbiodinium microadriaticum])

HSP 1 Score: 84.7 bits (208), Expect = 4.500e-13
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 0 
Query:  141 LPPSVRPALLLMQREAVASSLTAYPRLLQQFTAWGLDEAALWTCLTYILELAPLVIHIKLGEILPKLVEGIHYRNQFETGTSSGKLCSTSRTTWEDMLFHEAYQEAKAHERLKYGV 257
            L P    AL  ++  A A+   A P L ++F + G     LW  + +I ELAP+++HI L  I P L +  HYRNQFET +S G L    RT WE  LF +AY+ A+   R KYGV
Sbjct: 1159 LRPCQLEALHHVRSLARANHEQALPELTERFESLGFPVQDLWMTMAWIRELAPVILHIDLDSITPFLKKDTHYRNQFETKSSRGLLNLEVRTKWERSLFGDAYENAEPFHRPKYGV 1274
The following BLAST results are available for this feature:
BLAST of NO15G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OLP90704.14.500e-1342.24Calcium-dependent protein kinase 15 [Symbiodinium ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00110NO15G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00110.1NO15G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00110.1.cds1NO15G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00110.1.cds2NO15G00110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00110.1.cds3NO15G00110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00110.1 ID=NO15G00110.1|Name=NO15G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
ATGGCCCACACCACACACCGTACATCACACAGCACACACTATCTCCAAAA
CTATAGGAACCTTGGCGATGACGTGTGTTACACTGCTATTCCATCTATTT
CAGAGCAACGGGAAGCTACCAAGGGGATAAACACCACTACCAAGAGCAGG
AGCCATGACTGCAGCTCGGACAATTATCAAAACCCAGTGACAGCACCAAC
AACAACTCGAGGATCGAGCAAGACAGCGGCTGCAAGATGTATAGATGCTG
CAGCAGGGGCACTGCAGCGTTTGCCCTTGTCCGACACTACAACCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTTTTCCTCATCCCTCTCCTCCTCTACCACCACCACCTACAACTACT
ACTCTATCTCCCCTCCTCCACTACCTCCTTCTGTTCGTCCGGCCCTCCTC
CTCATGCAGCGTGAAGCCGTCGCGTCATCCCTTACCGCCTACCCCCGTTT
GCTCCAGCAATTCACCGCATGGGGCCTCGACGAGGCGGCCCTTTGGACCT
GCCTGACCTACATCCTAGAACTAGCCCCCCTTGTCATCCACATCAAGCTT
GGTGAGATCTTGCCGAAACTCGTGGAAGGCATCCACTATCGGAATCAGTT
TGAGACCGGCACTTCCTCTGGGAAGCTCTGCAGCACCAGTCGCACGACAT
GGGAGGACATGCTCTTCCACGAGGCATACCAGGAGGCCAAGGCGCACGAG
CGGCTCAAGTACGGGGTATGA
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protein sequence of NO15G00110.1

>NO15G00110.1-protein ID=NO15G00110.1-protein|Name=NO15G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MAHTTHRTSHSTHYLQNYRNLGDDVCYTAIPSISEQREATKGINTTTKSR
SHDCSSDNYQNPVTAPTTTRGSSKTAAARCIDAAAGALQRLPLSDTTTSS
SSSSSSSSSSSSSSSSSSFSSSLSSSTTTTYNYYSISPPPLPPSVRPALL
LMQREAVASSLTAYPRLLQQFTAWGLDEAALWTCLTYILELAPLVIHIKL
GEILPKLVEGIHYRNQFETGTSSGKLCSTSRTTWEDMLFHEAYQEAKAHE
RLKYGV*
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mRNA from alignment at chr15:26100..27449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00110.1 ID=NO15G00110.1|Name=NO15G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at chr15:26100..27449- (Nannochloropsis oceanica)
ATGGCCCACACCACACACCGTACATCACACAGCACACACTATCTCCAAAA
CTATAGGAACCTTGGCGATGACGTGTGTTACACTGCTATTCCATCTATTT
CAGAGCAACGGGAAGCTACCAAGGGGATAAACACCACTACCAAGAGCAGG
AGCCATGACTGCAGCTCGGACAATTATCAAAACCCAGTGACAGCACCAAC
AACAACTCGAGGATCGAGCAAGACAGCGGCTGCAAGATGTATAGATGCTG
CAGCAGGGGCACTGCAGCGTTTGCCCTTGTCCGACACTACAACCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTTTTCCTCATCCCTCTCCTCCTCTACCACCACCACCTACAACTACT
ACTCTATCTCCCCTCCTCCACTACCTCCTTCTGTTCGTCCGGTATGTCTT
TTCATACGTCTCCCAGCGATATGACCAGTTTTGTTGCTGCTGCTGTTACA
GCTGTTGCTACTTGCACTCCTGCAGCTGCCATTATTACCCATCCCTCCCC
CTCCGATTCCACTCTCGGTATTTTGACGAGGTATATTGCTACAGCCCAGC
GTCTCACCTCGGTACACCTCACCAGTCGTTCCACTGCCCCAACACCATCT
ACCTCCCCTGCTCCAGTACATTCTGCTTCTCCGTTACCGTCTTGCCCTTC
CTCCTCATCATCCTCCTTATCCCCCTTTCTCCCTTGCTGGCCCACTATCC
AGACCGTCACCGCCTGTCTCCGATCTCAGCTTGCCTTTGATCATCTCTCC
ATCACTCTCTGTCAACGCCAGGCCCTCCTCCTCATGCAGCGTGAAGCCGT
CGCGTCATCCCTTACCGCCTACCCCCGTTTGCTCCAGCAATTCACCGCAT
GGGGCCTCGACGAGGCGGCCCTTTGGACCTGCCTGACCTACATCCTAGAA
CTAGCCCCCCTTGTCATCCACATCAAGCTTGGTGAGATCTTGCCGAAACT
CGTGGAAGGCATCCACTATCGGAATCAGGTAGGGAAGGAGGAAAGGAGGG
AGTGAAGGGGGACGAGGGACGGAGAACCGGAGAGAAAGGAGGAGGTAGGG
ATGGATGGAGGCTGGGAGGGGAGAGCAATGTTATCAACTTACTAAATTTT
CCGTGTCATTGTGAACCTTGACACTCCATCTCCCCATCCCCTCGATCCTC
CCCCCTCTCCTCCTTCCCCGCCCTTAGTTTGAGACCGGCACTTCCTCTGG
GAAGCTCTGCAGCACCAGTCGCACGACATGGGAGGACATGCTCTTCCACG
AGGCATACCAGGAGGCCAAGGCGCACGAGCGGCTCAAGTACGGGGTATGA
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Coding sequence (CDS) from alignment at chr15:26100..27449-

>NO15G00110.1 ID=NO15G00110.1|Name=NO15G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr15:26100..27449- (Nannochloropsis oceanica)
ATGGCCCACACCACACACCGTACATCACACAGCACACACTATCTCCAAAA
CTATAGGAACCTTGGCGATGACGTGTGTTACACTGCTATTCCATCTATTT
CAGAGCAACGGGAAGCTACCAAGGGGATAAACACCACTACCAAGAGCAGG
AGCCATGACTGCAGCTCGGACAATTATCAAAACCCAGTGACAGCACCAAC
AACAACTCGAGGATCGAGCAAGACAGCGGCTGCAAGATGTATAGATGCTG
CAGCAGGGGCACTGCAGCGTTTGCCCTTGTCCGACACTACAACCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTTTTCCTCATCCCTCTCCTCCTCTACCACCACCACCTACAACTACT
ACTCTATCTCCCCTCCTCCACTACCTCCTTCTGTTCGTCCGGCCCTCCTC
CTCATGCAGCGTGAAGCCGTCGCGTCATCCCTTACCGCCTACCCCCGTTT
GCTCCAGCAATTCACCGCATGGGGCCTCGACGAGGCGGCCCTTTGGACCT
GCCTGACCTACATCCTAGAACTAGCCCCCCTTGTCATCCACATCAAGCTT
GGTGAGATCTTGCCGAAACTCGTGGAAGGCATCCACTATCGGAATCAGTT
TGAGACCGGCACTTCCTCTGGGAAGCTCTGCAGCACCAGTCGCACGACAT
GGGAGGACATGCTCTTCCACGAGGCATACCAGGAGGCCAAGGCGCACGAG
CGGCTCAAGTACGGGGTATGA
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Synonyms
Publications