NO14G03270.1, NO14G03270.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G03270.1
Unique Name	NO14G03270.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2882
Alignment location	chr14:983719..987542 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:983719..987542 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO14G03270.1 vs.
Match: XP_005853860.1 (large subunit ribosomal protein L10e [Nannochloropsis gaditana CCMP526]; EKU22501.1 large subunit ribosomal protein L10e [Nannochloropsis gaditana CCMP526]; EWM24475.1 large subunit ribosomal protein l10e [Nannochloropsis gaditana])

HSP 1 Score: 419.5 bits (1077), Expect = 7.300e-114
Identity = 200/212 (94.34%), Postives = 205/212 (96.70%), Query Frame = 0

Query:   32 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKRADVGLYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDTYHIRVRMHPYHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQVMISVRCKDVHQHHAIEALRRAKFKFPGRQKILKSNKWGFTEWDREEYVRRRLDGTLIADGVGVKYVAQHGPLGKKPGT 244
            MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNK+ADVG+YPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKD+YHIRVRMHP+HVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQ MISVRCKDVHQ HAIEALRRAKFKFPGRQKILKSNKWGFT WDRE+YVR RLDGTLI DGVGVKYV QHGPLGKK GT
Sbjct:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKAGT 212

The following BLAST results are available for this feature:

BLAST of NO14G03270.1 vs.

BLAST of NO14G03270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005853860.1	7.300e-114	94.34	large subunit ribosomal protein L10e [Nannochlorop...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G03270	NO14G03270	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G03270.1	NO14G03270.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G03270.1.cds1	NO14G03270.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G03270.1.cds2	NO14G03270.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G03270.1.cds3	NO14G03270.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G03270.1.cds4	NO14G03270.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G03270.1.cds5	NO14G03270.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:983719..987542+
coding sequence from alignment at chr14:983719..987542+

mRNA sequence

>NO14G03270.1 ID=NO14G03270.1|Name=NO14G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2882bp
CCCTCCACCACCCCTCCTCTTCTGTTCCTCGCTCACTCCAGACCCGCGCT
CACCCGCACCCCGCACACACACACTGCCTGCTTCACCTTGCCTTTTGCTG
TGTGGCATTGCGTCCGAGTGAGCGGTTCGGGCCGATGTAAGTCACTCACA
CGTTTGCCCTTATACCCACTCTACGCGCGAGCGAAGACTGGAATCGATGG
CTCTGCGAGCAGTCCCTCCTTTCTTCACGCCTCTCCTTGAGCCTTGAGAT
TGACGATGTTCCCACCGCAACACCGTCTACACCCTCGAAGAGACCGCGTC
GTGCATATTTACTGTCTGTTTATGGTGCCGCATGAGAACGAAAGTTATGC
GCGCCCTTTCTTCACCCTTCTTGTCATCGACCCTGCCCCGGTATGGATGG
TGGGCACTCCACATCCAGGCGTATCACGGAGCCCCTCGTCACGCCTTTTA
TCCCCGCACGCACGAAAGAGGCCGCTTGTGATGTAGTCTGGAGTTTGGAC
AGCAGACCAAAAGCGAGCGGTGGCTCGCGTTGCCATGAGCATCCCTCTCC
ACAGCTCACATCATCCTACCCTTCACACGCACTCCTCCTTCCTCCCCCCC
TCTCCCGCCCATCACGACAGCGGCACCATGGGACGACGACCTGCACGCTG
CTATCGCTTCCATAAGAAGAAGCCCTATATCAAGTCGCGGTACCTTCGTG
GTGTGCCCGACTCCAAGATCCGCATATTCGACGGTGGCAACAAGCGGGCC
GACGTGGGGCTCTACCCATGCGTGGTGCACATGGTGTCAGATGAGAAGGA
GCAGATCTCGTCCGAAGCCATGGAGGCTGCGCGCGTGGCGTGCAACAAGT
ACATGCTCAAGAACGCCGGCAAGGATACTTACCACATCCGTGTGCGCATG
CACCCTTACCACGTCCTACGTATGTCAAAGATGCTTTCCTGCGCCGGTGC
CGATCGTCTTTCCCAGGGTATGCGCCACTCCTTCGGCAAGCCCGCGGGCA
AGGTGGCGCGTATCGAGATTGGGCAGGTGATGATCAGTGTCCGCTGCAAG
GATGTGCACCAGCACCACGCGATCGAGGCGCTCCGAAGAGCCAAGTTCAA
ATTCCCCGGCCGACAGAAGATCCTGAAGTCCAACAAGTGGGGTTTTACGG
AATGGGACAGAGAGGAGTACGTCCGTCGCAGGCTGGACGGCACGCTCATC
GCCGATGGGGTGGGCGTGAAGTATGTGGCGCAGCACGGGCCCCTGGGCAA
GAAGCCGGGTACTTAATGGGGAAAGGAAGGAAGGAAGGATAGAATGGCAG
TGATAGGGAAGAGAGGACGGAGGAGGAGAAGAGAGGCGTGAGAAGGTTTG
GTGTGTGTAGGGGCGGACGGAGGAGGGGGTGGAGGAAGGGGAGGAGGAAG
TTCGAGGCTGTCGGTTGAGAGGTCATTTCACTGGCAAGATGAGGAAGGGG
AGAAGATAGAGAGCATTCATCGTCCTCCTCTCCTCTCATTCGAATTGTCT
CTCTCTCTGGCTGGGATTGTGTCTGCTTGGTGTTTTCTGTCGAGGGAGAG
GAAAGGAGAGACGAGAATCGTCGAAAGGAAAGCAAGCGAGCAGTTTGAAG
AAGCCCAGTCAAGGCATGAAAGAAAAATTACCCCCCCCGCCAATGCCCGG
GGCCACCATTCCAACTCGACACGACACGACACACTTGCTGGGCTGGCCAT
AGCTCTGCTTGCTGCAGCAGCGCTTCTTTCCCCTGTGACCTCGGAATTGT
CGCACTAACAAACCATCGTCTCTTGCTTTTTTCTTCCATTAAACACTTGT
CTTGTTTTTCCCGCCCTTTTCCTTTCTTGCTCCAGTCCCGCTGTCCTTGC
GTGCATCTTCCTTCCCCCTCCTCCCTCCCCATCAAGCTCAGGGACACAGC
CAACGTCCTACCTCGTCCGCCCGCCCTCCCTCCCGCCTTCCCTCCCTCCC
TCGGTCCCTACCGAAGGCCTAGATGAGTAACCCACTTTTGTGCTTCTATC
ATGACTACCATGCTGAAGCCGTTCGAGACCACCGATCGGAGGGTGCCTTA
AAGAGGAGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGCGGAGGGTAAGCT
AAAACGAAAACAAGGTGACACGGGCCGTTTCGTGGACATCTATTCACTCA
TTACTCGTGACCGATTACTCATGTGCACCAAAACGCAGTCCGATCCCGAG
TCAACCACCCTCCTCCCCGCCCTCCCCCCTACCCGGCAAGATGCCTCGGT
AGAGCCCTCCCAGCCCGCCTTTCCCCAGCGCCACCACCCTCTCCTGGAGC
GTCGCGTCTTTGCCTCGCGGGCCCACTGGCGTGCCGGCTTGGACCTTAGG
GAGGGAGGGTGGAAGGGAGGGTGGAAGGGAGGAGCTGTTAAGGCCTCATC
GTTTCCTTCTTCCCATTTGCGTGTCCAAGTGGGTAAAAATGAAAAGCAGG
GAGGCAGGGAGAGAAGAAAGGAGGGTAGGAAGGAGGGAGAGAGGGAGAAA
GGCAGGAAAGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGATGCACCTGGT
TCTTGAGTACTTCTAGCGGCCATACGACCCAGAAGCCGAAAGTGGCCGCG
CCGGCCGAGGCGAGAAATTGTCCAAGCTTGCCTTGGAAGACATCGGGGTG
ATGCCGTCTGAGGGAGAGAGGGAGGAGAAGGGAGGGAGGGAGGGAGAGAG
GGGCACGAGTGGCCGCTGCGTGAGTGGATTGAGGTGTCTTACATGCAAGG
AAAATCAAAGTAGGGCTGGTGCAGGTAAGGGAAAAAAGACAAAGAAAAAA
TCCCATCCAGACAATAAAGGGAAGGAAAGGAAAGAAGAAATATAAGGAGG
GAGGGAGGGAGGGAGGGAGGACGGAGGTCGTG

protein sequence of NO14G03270.1

>NO14G03270.1-protein ID=NO14G03270.1-protein|Name=NO14G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MSIPLHSSHHPTLHTHSSFLPPSPAHHDSGTMGRRPARCYRFHKKKPYIK
SRYLRGVPDSKIRIFDGGNKRADVGLYPCVVHMVSDEKEQISSEAMEAAR
VACNKYMLKNAGKDTYHIRVRMHPYHVLRMSKMLSCAGADRLSQGMRHSF
GKPAGKVARIEIGQVMISVRCKDVHQHHAIEALRRAKFKFPGRQKILKSN
KWGFTEWDREEYVRRRLDGTLIADGVGVKYVAQHGPLGKKPGT*

mRNA from alignment at chr14:983719..987542+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G03270.1 ID=NO14G03270.1|Name=NO14G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=3824bp|location=Sequence derived from alignment at chr14:983719..987542+ (Nannochloropsis oceanica)
CCCTCCACCACCCCTCCTCTTCTGTTCCTCGCTCACTCCAGACCCGCGCT
CACCCGCACCCCGCACACACACACTGCCTGCTTCACCTTGCCTTTTGCTG
TGTGGCATTGCGTCCGAGTGAGCGGTTCGGGCCGATGTAAGTCACTCACA
CGTTTGCCCTTATACCCACTCTACGCGCGAGCGAAGACTGGAATCGATGG
CTCTGCGAGCAGTCCCTCCTTTCTTCACGCCTCTCCTTGAGCCTTGAGAT
TGACGATGTTCCCACCGCAACACCGTCTACACCCTCGAAGAGACCGCGTC
GTGCATATTTACTGTCTGTTTATGGTGCCGCATGAGAACGAAAGTTATGC
GCGCCCTTTCTTCACCCTTCTTGTCATCGACCCTGCCCCGGTATGGATGG
TGGGCACTCCACATCCAGGCGTATCACGGAGCCCCTCGTCACGCCTTTTA
TCCCCGCACGCACGAAAGAGGCCGCTTGTGATGTAGTCTGGAGTTTGGAC
AGCAGACCAAAAGCGAGCGGTGGCTCGCGTTGCCATGAGCATCCCTCTCC
ACAGCTCACATCATCCTACCCTTCACACGCACTCCTCCTTCCTCCCCCCC
TCTCCCGCCCATCACGACAGCGGCACCATGGGACGACGACCTGCACGCTG
CTATCGCTTCCATAAGAAGAAGCCCTATATCAAGTCGCGGTACCTTCGTG
GTGTGCCCGGTACGTAGTCGGGAAACGGACCGCGGAAGGGAGAACGTTGG
ACCAAGGGCGGGGGGGCCGTGTGCTGGCAGGGGAGAAATGTACCTGGCAT
CAGGCCAAGCTCTTTCGCGTCCCTACCACTTTCTAGTGTTAGTATGTGTG
TCTGTGCGCGCAGGTGATGCTGTCGCGGACTAGGACTCTATTCGTGCTCG
TGACGGGCCGCTTTACTCTGTTCTTTCCGGCATGCTCACTCCGTCTGCCA
TTTTGTCCCTCGTTCTCTGACTTTAGACTCCAAGATCCGCATATTCGACG
GTGGCAACAAGCGGGCCGACGTGGGGCTCTACCCATGCGTGGTGCACATG
GTGTCAGATGAGAAGGAGCAGATCTCGTCCGAAGCCATGGAGGCTGCGCG
CGTGGCGTGCAACAAGTACATGCTCAAGAACGCCGGCAAGGTACACGACG
ATCGGAGATAGGGAAGGGGAGGGAAGGACGGAGAGAGTTAGAGAGAGAGG
AAGTGAAGGAGGGAAGAAGAGTGATGCATGCTCTCCTTGTTAGTAGTCGT
GGTGGCGGAAAGGTACTTGTTTTGCTGTGTGTACTCGTTAGACCCTTAAT
TAGACGTTTCCCAGCCTCGGTCCCTCGGCTCACTCTCAACCCCCCATCCC
CCTCCTCTCCCTTCTTTGCTCCGTCCCCCTTACTCCCCCTTGCATTGTTA
CAGGATACTTACCACATCCGTGTGCGCATGCACCCTTACCACGTCCTACG
TATGTCAAAGATGCTTTCCTGCGCCGGTGCCGATCGTCTTTCCCAGGTAA
AGTCGGAGGGAGAGAGGGAGGAAGGGTAAGGTGGTTACGTTATCTCCCAT
CTTCTCCGAAATATGTGCACCACCAACATCAAAAATGATTCAATTTTGTG
CATCTTCCTTCTCGTCTTGACCCTTCCCGAAGACCACCCACGCACTTTGG
ATCCACCTCCTCTCACCCCCTCCACCCTTCCGCCCTCCCCTCCCCCCCTT
CCTCGATAGGGTATGCGCCACTCCTTCGGCAAGCCCGCGGGCAAGGTGGC
GCGTATCGAGATTGGGCAGGTGATGATCAGTGTCCGCTGCAAGGATGTGC
ACCAGCACCACGCGATCGAGGCGCTCCGAAGAGCCAAGTTCAAATTCCCC
GGCCGACAGAAGGTAAGGCTCAGAGCAACCAAGAAAAGTCGTAGAGATAG
AGAAGGAAGTAGAGAAATTGGATAGGAAGAGGGTCATGCGCCTATACGTG
CACTTTTCTCTTTTCCACGCAACGCCCACACGTCCACCGCCCTACCGCCT
CCACTTACCCCCCCCCCCCCCCCTCTTCCCGAACCTCCCCACCAATTACT
AATTTCAATAGATCCTGAAGTCCAACAAGTGGGGTTTTACGGAATGGGAC
AGAGAGGAGTACGTCCGTCGCAGGCTGGACGGCACGCTCATCGCCGATGG
GGTGGGCGTGAAGTATGTGGCGCAGCACGGGCCCCTGGGCAAGAAGCCGG
GTACTTAATGGGGAAAGGAAGGAAGGAAGGATAGAATGGCAGTGATAGGG
AAGAGAGGACGGAGGAGGAGAAGAGAGGCGTGAGAAGGTTTGGTGTGTGT
AGGGGCGGACGGAGGAGGGGGTGGAGGAAGGGGAGGAGGAAGTTCGAGGC
TGTCGGTTGAGAGGTCATTTCACTGGCAAGATGAGGAAGGGGAGAAGATA
GAGAGCATTCATCGTCCTCCTCTCCTCTCATTCGAATTGTCTCTCTCTCT
GGCTGGGATTGTGTCTGCTTGGTGTTTTCTGTCGAGGGAGAGGAAAGGAG
AGACGAGAATCGTCGAAAGGAAAGCAAGCGAGCAGTTTGAAGAAGCCCAG
TCAAGGCATGAAAGAAAAATTACCCCCCCCGCCAATGCCCGGGGCCACCA
TTCCAACTCGACACGACACGACACACTTGCTGGGCTGGCCATAGCTCTGC
TTGCTGCAGCAGCGCTTCTTTCCCCTGTGACCTCGGAATTGTCGCACTAA
CAAACCATCGTCTCTTGCTTTTTTCTTCCATTAAACACTTGTCTTGTTTT
TCCCGCCCTTTTCCTTTCTTGCTCCAGTCCCGCTGTCCTTGCGTGCATCT
TCCTTCCCCCTCCTCCCTCCCCATCAAGCTCAGGGACACAGCCAACGTCC
TACCTCGTCCGCCCGCCCTCCCTCCCGCCTTCCCTCCCTCCCTCGGTCCC
TACCGAAGGCCTAGATGAGTAACCCACTTTTGTGCTTCTATCATGACTAC
CATGCTGAAGCCGTTCGAGACCACCGATCGGAGGGTGCCTTAAAGAGGAG
AAGGAAGGAAGGGAGGGAGGGAGGGAGGGCGGAGGGTAAGCTAAAACGAA
AACAAGGTGACACGGGCCGTTTCGTGGACATCTATTCACTCATTACTCGT
GACCGATTACTCATGTGCACCAAAACGCAGTCCGATCCCGAGTCAACCAC
CCTCCTCCCCGCCCTCCCCCCTACCCGGCAAGATGCCTCGGTAGAGCCCT
CCCAGCCCGCCTTTCCCCAGCGCCACCACCCTCTCCTGGAGCGTCGCGTC
TTTGCCTCGCGGGCCCACTGGCGTGCCGGCTTGGACCTTAGGGAGGGAGG
GTGGAAGGGAGGGTGGAAGGGAGGAGCTGTTAAGGCCTCATCGTTTCCTT
CTTCCCATTTGCGTGTCCAAGTGGGTAAAAATGAAAAGCAGGGAGGCAGG
GAGAGAAGAAAGGAGGGTAGGAAGGAGGGAGAGAGGGAGAAAGGCAGGAA
AGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGATGCACCTGGTTCTTGAGT
ACTTCTAGCGGCCATACGACCCAGAAGCCGAAAGTGGCCGCGCCGGCCGA
GGCGAGAAATTGTCCAAGCTTGCCTTGGAAGACATCGGGGTGATGCCGTC
TGAGGGAGAGAGGGAGGAGAAGGGAGGGAGGGAGGGAGAGAGGGGCACGA
GTGGCCGCTGCGTGAGTGGATTGAGGTGTCTTACATGCAAGGAAAATCAA
AGTAGGGCTGGTGCAGGTAAGGGAAAAAAGACAAAGAAAAAATCCCATCC
AGACAATAAAGGGAAGGAAAGGAAAGAAGAAATATAAGGAGGGAGGGAGG
GAGGGAGGGAGGACGGAGGTCGTG

Coding sequence (CDS) from alignment at chr14:983719..987542+

>NO14G03270.1 ID=NO14G03270.1|Name=NO14G03270.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr14:983719..987542+ (Nannochloropsis oceanica)
ATGAGCATCCCTCTCCACAGCTCACATCATCCTACCCTTCACACGCACTC
CTCCTTCCTCCCCCCCTCTCCCGCCCATCACGACAGCGGCACCATGGGAC
GACGACCTGCACGCTGCTATCGCTTCCATAAGAAGAAGCCCTATATCAAG
TCGCGGTACCTTCGTGGTGTGCCCGACTCCAAGATCCGCATATTCGACGG
TGGCAACAAGCGGGCCGACGTGGGGCTCTACCCATGCGTGGTGCACATGG
TGTCAGATGAGAAGGAGCAGATCTCGTCCGAAGCCATGGAGGCTGCGCGC
GTGGCGTGCAACAAGTACATGCTCAAGAACGCCGGCAAGGATACTTACCA
CATCCGTGTGCGCATGCACCCTTACCACGTCCTACGTATGTCAAAGATGC
TTTCCTGCGCCGGTGCCGATCGTCTTTCCCAGGGTATGCGCCACTCCTTC
GGCAAGCCCGCGGGCAAGGTGGCGCGTATCGAGATTGGGCAGGTGATGAT
CAGTGTCCGCTGCAAGGATGTGCACCAGCACCACGCGATCGAGGCGCTCC
GAAGAGCCAAGTTCAAATTCCCCGGCCGACAGAAGATCCTGAAGTCCAAC
AAGTGGGGTTTTACGGAATGGGACAGAGAGGAGTACGTCCGTCGCAGGCT
GGACGGCACGCTCATCGCCGATGGGGTGGGCGTGAAGTATGTGGCGCAGC
ACGGGCCCCTGGGCAAGAAGCCGGGTACTTAA

Synonyms

Publications