NO14G02890.2, NO14G02890.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G02890.2
Unique Name	NO14G02890.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3087
Alignment location	chr14:853902..857654 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:853902..857654 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO14G02890.2 vs.
Match: EWM24520.1 (PUB domain protein [Nannochloropsis gaditana])

HSP 1 Score: 233.4 bits (594), Expect = 1.100e-57
Identity = 158/290 (54.48%), Postives = 198/290 (68.28%), Query Frame = 0

Query:    1 MLNDDTKTLAQNKVKEGSCILLSIAVSASASPSPSTSICNSGSGAVAA-AAPAPPLPSSATAAAPAPAPAASSAPQTAQAPIFPPPSTSTALPAHIVILRAAIAGVRTSNPPEVGATALRTLATMLGNVIANPMEEKYRQLKKNNAAFVRRVGGVSGTGAILRAAGFEESTDTWDLRPSEQGWNLLCSVKAELDSSIATLPPSLPLPAPGAGAGGLAMPPLMGG--GGMGGGAGG-MDPAMMQQAMGMMQ-NPAIRDRIMQELRATN-PALAGQAEAMLSNPGAMGQMMQ 285
            ML DD KTLA++K+ EGSC+LLS+          S S+ N GS A  + A+PA  LPS+     P+P     + P +  +P+ P PS STA PA +VILRAAI GVR+SN PEVG  AL+TL+TMLGN+IANPMEEK+RQ KK+N AF+RRVG  SGTGAILRAAGF+ES  TW L+PSEQGW +LC+ K E+D++IA LPPSLP P PGA     AM  L GG  GG GGG G  MDP M+   MGMMQ NPA+R + ++   A++ P  A   EA+L+NP  + Q+ Q
Sbjct:   63 MLKDDRKTLAEHKLTEGSCVLLSVL---------SPSVSNRGSSASPSIASPASSLPSN-----PSP-----NNPTSLPSPVIPSPS-STASPA-VVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQESAQTWVLQPSEQGWGVLCTAKGEIDAAIAALPPSLPPPGPGASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATLMGMMQSNPALRAQALRLFGASDGPGQARSVEALLNNPALVNQLAQ 331

The following BLAST results are available for this feature:

BLAST of NO14G02890.2 vs.

BLAST of NO14G02890.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24520.1	1.100e-57	54.48	PUB domain protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G02890	NO14G02890	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02890.2	NO14G02890.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02890.2.cds1	NO14G02890.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02890.2.cds2	NO14G02890.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02890.2.cds3	NO14G02890.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02890.2.cds4	NO14G02890.2.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:853902..857654-
coding sequence from alignment at chr14:853902..857654-

mRNA sequence

>NO14G02890.2 ID=NO14G02890.2|Name=NO14G02890.2|organism=Nannochloropsis oceanica|type=mRNA|length=3087bp
CCCTCTCCCTTAAAGCGGGCGACTTCTGTCTCCAGCGCCGCCACCCGCTG
CTCCCCTTCCTCTTTCTGTGCCTTAATGTCTCCTGCTACCTTCTGCAACC
CTCGATAGCGGCCTAGCAGGTCCTTCATTTTCTCAATCAATTTCTCGTTC
TCCCCCTGCACTTGCGCCAACGACATTCGGAGGGTTTCATCCCTACCGTT
ACAATCCCCACCACCACCACCAAAAGTTATCTCTTCACGCGGCGGTGACG
ATGAGGAAGATAAGCTCACTTCGTTGAATCGGGACTCCAATGCACTGTAT
TGCTGTTGCAGGGTCGCATACCGTTCCGCCAAAGCGGAGGATGGAGCGGT
CGGGGAACGGGTCATACTGCTCGAGCTGACCATTTCCGTTTCATCGTCGC
CCTCTACGCGTGGGCCTTTGCCACCGGCACTGTTGTTATTGTTATCGTCG
TCATTCTTCTTCTTGTTGTTGTGGCGGAGGGAGCCCAGCTCTTCTTCAAG
CACTTGGAGCTTGGTGGCTTGCCCTTGACAGAGGGCAAGGAGCTCGCCAG
GCGTGCAGTCCTCATACCGGCTAGCAGACGAAGAGGACGAAGGAAGGGGA
CAAGGGCCGCTCTGCAAGCGTTGCATCCCATCGAGGTCAATCCCTCGTTT
GAGCTTTTCGGCGGCCTCCTTGGCCTTGGAAAGGAAGTCCATCGGTGCAC
TGGTATGGGTTGTGGGGGACGTAGGCGGTCTGTTGTGAGTGGGTGATGAT
TATGATGATGCCTATTTCGCAGATTGGAAAGCAGGAACGGAGTGAGGCTC
TCCGGGGCTTGACGTTGACCGGCAACGCAAGGCCACGCCTTGGTCCCTGT
GCAGTCCGTGGTCGTCGTGGTCGTGGAAGGTGTGTAGGTAAAGGGACGTG
GAAGGGCTCGCTGCAATCGAGCATCAGTTTCCGCGACGACGGGCAAAGCA
AGCAGGCAGACCCCGGAGCGTCTCAAAACAGCCGAGCATTCCCTCCCTGC
AACCCATATACAAACACACAGTCTCACAGAGCACATCCAGTACATTGACC
ACTATCCACCTTGTACCATGACGGAGGACGCGAGTGCGAAGTTGAAAAAC
TCATGCTTCGCCTCCCCCCTTTCCCCCCTCCCTCGTCTACAAACACGCGC
ACGCCACAACGCCACAAACAGCAGCACAACAAAGGAGCGATGGTCGAGGA
TGCCATTTCCATCAAGATCAAGACACTCAAAGGGGGTGGAGAGAACTCTG
TCGACCTGAAGCTCACGGCCGAGACTACAGTAGGCCAGCTCAAGGTTTGT
GCTTATGCCACAGGAGGGAGGGGCAGGGGAAGGGGCTCTCATGTGTAGAC
GTGTGAGTATGTGTGCCGTATGGACGCGTGCCATCCGATCAATAGCGTCT
CCAACGCCGAGGTTCCAACTCAGCCTCGTCTCTCCCGCAGTCTCTACATG
ATTCATTCTCAGTCTCACGCTAGGTGGGGTGATTCAGAGACTCGCGGGAT
GGCCATACGAGTGGAGTATGCACGGGGGGTACATGTGTGCATTCAATAGA
TTGCTATGCTTGCAGGCAAATTGTTACAGTAATATAACCACACCCCTAAA
CCCCTCCTTCTCTCCTGTCCCGTCCAGGCGCAAATTGCGAGCAGCACCCT
CCAGGTTCCGCCGGAGGCCCAACGGCTTGTATTCCAAGGGCGAATGCTCA
ACGACGACACCAAAACTCTAGCACAAAACAAAGTCAAGGAAGGATCGTGC
ATCCTGCTCTCCATTGCCGTGTCCGCCTCCGCCTCCCCCTCCCCCAGCAC
CAGCATCTGTAACAGTGGCAGCGGAGCCGTGGCCGCTGCCGCTCCTGCTC
CTCCTCTTCCCAGCAGTGCTACTGCTGCTGCTCCTGCTCCTGCTCCTGCT
GCTTCATCCGCTCCCCAAACTGCTCAAGCTCCCATTTTCCCTCCTCCTTC
CACATCCACGGCCTTACCTGCACACATTGTAATCTTGCGGGCGGCGATCG
CGGGAGTGCGGACCTCCAACCCGCCGGAAGTGGGAGCAACGGCCCTGAGG
ACGTTGGCCACGATGCTGGGGAACGTCATAGCAAACCCGATGGAGGAGAA
GTACCGGCAGCTCAAGAAAAATAATGCGGCGTTTGTGCGACGGGTGGGAG
GAGTGTCGGGCACCGGGGCCATACTGCGCGCTGCGGGTTTCGAGGAGTCC
ACAGACACATGGGATCTGCGTCCTTCTGAGCAAGGTTGGAATTTGCTTTG
CAGCGTCAAGGCGGAGCTCGACTCGTCGATTGCTACCCTCCCTCCATCCC
TTCCTCTACCGGCTCCTGGGGCTGGTGCGGGAGGTCTGGCGATGCCGCCC
TTGATGGGGGGAGGAGGGATGGGGGGAGGAGCAGGAGGGATGGACCCTGC
CATGATGCAGCAAGCGATGGGTATGATGCAGAACCCGGCCATACGTGATA
GAATTATGCAGGAACTCCGTGCAACCAATCCCGCACTAGCCGGGCAAGCG
GAGGCCATGCTCTCTAACCCAGGAGCAATGGGACAGATGATGCAGGCACT
GCAGTCCAACCCCCAGATGATGCAACAAGCGCAACAAGCCATGAGCAGGG
GAGCAATGCCTGGCTTCCCTCCCCCTCCCGCTTCTTCCACCACATTAGGA
GGCAATACCCCTGCCTCCGGTGGTCTTGATCTCCCGAGGCCTCCAGGTGG
AACAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCGATGGGGCAAGGGCCAC
AGCGGTCGGACGCAGAGATGACGGAAGAGGAGTTGATTCAGCAAGCAATC
GAAAGATCCTTGCGCGACATGTAGAAGGGATAAACGAATCGGACAGAGTG
ATGTGCATGTTCTTCCCACACCCCCAAAGAAAGGGGAGGAGGAGGGTGAA
GAGCATTGCTCTAGTAAACACGTGACGTCGTGACGTCACGATGCTCCCAT
TGAGATGCGAACGTGTTGAATGTGAGACGAGAAAAGTGCGGAGATGCAAA
TCCATGCCACGCCACAGAAATTTTTGGATGACTGTATGGCTGCAGCTCGC
TGCCCGAAGGAAAAAATAACCATCCGTACTCAGCTAA

protein sequence of NO14G02890.2

>NO14G02890.2-protein ID=NO14G02890.2-protein|Name=NO14G02890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MLNDDTKTLAQNKVKEGSCILLSIAVSASASPSPSTSICNSGSGAVAAAA
PAPPLPSSATAAAPAPAPAASSAPQTAQAPIFPPPSTSTALPAHIVILRA
AIAGVRTSNPPEVGATALRTLATMLGNVIANPMEEKYRQLKKNNAAFVRR
VGGVSGTGAILRAAGFEESTDTWDLRPSEQGWNLLCSVKAELDSSIATLP
PSLPLPAPGAGAGGLAMPPLMGGGGMGGGAGGMDPAMMQQAMGMMQNPAI
RDRIMQELRATNPALAGQAEAMLSNPGAMGQMMQALQSNPQMMQQAQQAM
SRGAMPGFPPPPASSTTLGGNTPASGGLDLPRPPGGTGAGAGAGAGAMGQ
GPQRSDAEMTEEELIQQAIERSLRDM*

mRNA from alignment at chr14:853902..857654-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G02890.2 ID=NO14G02890.2|Name=NO14G02890.2|organism=Nannochloropsis oceanica|type=mRNA|length=3753bp|location=Sequence derived from alignment at chr14:853902..857654- (Nannochloropsis oceanica)
CCCTCTCCCTTAAAGCGGGCGACTTCTGTCTCCAGCGCCGCCACCCGCTG
CTCCCCTTCCTCTTTCTGTGCCTTAATGTCTCCTGCTACCTTCTGCAACC
CTCGATAGCGGCCTAGCAGGTCCTTCATTTTCTCAATCAATTTCTCGTTC
TCCCCCTGCACTTGCGCCAACGACATTCGGAGGGTTTCATCCCTACCGTT
ACAATCCCCACCACCACCACCAAAAGTTATCTCTTCACGCGGCGGTGACG
ATGAGGAAGATAAGCTCACTTCGTTGAATCGGGACTCCAATGCACTGTAT
TGCTGTTGCAGGGTCGCATACCGTTCCGCCAAAGCGGAGGATGGAGCGGT
CGGGGAACGGGTCATACTGCTCGAGCTGACCATTTCCGTTTCATCGTCGC
CCTCTACGCGTGGGCCTTTGCCACCGGCACTGTTGTTATTGTTATCGTCG
TCATTCTTCTTCTTGTTGTTGTGGCGGAGGGAGCCCAGCTCTTCTTCAAG
CACTTGGAGCTTGGTGGCTTGCCCTTGACAGAGGGCAAGGAGCTCGCCAG
GCGTGCAGTCCTCATACCGGCTAGCAGACGAAGAGGACGAAGGAAGGGGA
CAAGGGCCGCTCTGCAAGCGTTGCATCCCATCGAGGTCAATCCCTCGTTT
GAGCTTTTCGGCGGCCTCCTTGGCCTTGGAAAGGAAGTCCATCGGTGCAC
TGGTATGGGTTGTGGGGGACGTAGGCGGTCTGTTGTGAGTGGGTGATGAT
TATGATGATGCCTATTTCGCAGATTGGAAAGCAGGAACGGAGTGAGGCTC
TCCGGGGCTTGACGTTGACCGGCAACGCAAGGCCACGCCTTGGTCCCTGT
GCAGTCCGTGGTCGTCGTGGTCGTGGAAGGTGTGTAGGTAAAGGGACGTG
GAAGGGCTCGCTGCAATCGAGCATCAGTTTCCGCGACGACGGGCAAAGCA
AGCAGGCAGACCCCGGAGCGTCTCAAAACAGCCGAGCATTCCCTCCCTGC
AACCCATATACAAACACACAGTCTCACAGAGCACATCCAGTACATTGACC
ACTATCCACCTTGTACCATGACGGAGGACGCGAGTGCGAAGTTGAAAAAC
TCATGCTTCGCCTCCCCCCTTTCCCCCCTCCCTCGTCTACAAACACGCGC
ACGCCACAACGCCACAAACAGCAGCACAACAAAGGAGCGATGGTCGAGGA
TGCCATTTCCATCAAGATCAAGACACTCAAAGGGGGTGGAGAGAACTCTG
TCGACCTGAAGCTCACGGCCGAGACTACAGTAGGCCAGCTCAAGGTTTGT
GCTTATGCCACAGGAGGGAGGGGCAGGGGAAGGGGCTCTCATGTGTAGAC
GTGTGAGTATGTGTGCCGTATGGACGCGTGCCATCCGATCAATAGCGTCT
CCAACGCCGAGGTTCCAACTCAGCCTCGTCTCTCCCGCAGTCTCTACATG
ATTCATTCTCAGTCTCACGCTAGGTGGGGTGATTCAGAGACTCGCGGGAT
GGCCATACGAGTGGAGTATGCACGGGGGGTACATGTGTGCATTCAATAGA
TTGCTATGCTTGCAGGCAAATTGTTACAGTAATATAACCACACCCCTAAA
CCCCTCCTTCTCTCCTGTCCCGTCCAGGCGCAAATTGCGAGCAGCACCCT
CCAGGTTCCGCCGGAGGCCCAACGGCTTGTATTCCAAGGGCGAATGCTCA
ACGACGACACCAAAACTCTAGCACAAAACAAAGTCAAGGAAGGATCGTGC
ATCCTGCTCTCCATTGCCGTGTCCGCCTCCGCCTCCCCCTCCCCCAGCAC
CAGCATCTGTAACAGTGGCAGCGGAGCCGTGGCCGCTGCCGCTCCTGCTC
CTCCTCTTCCCAGCAGTGCTACTGCTGCTGCTCCTGCTCCTGCTCCTGCT
GCTTCATCCGCTCCCCAAACTGCTCAAGCTCCCATTTTCCCTCCTCCTTC
CACATCCACGGCCTTACCTGCACACATTGTAATCTTGCGGGCGGCGATCG
CGGGAGTGCGGACCTCCAACCCGCCGGAAGTGGGAGCAACGGCCCTGAGG
ACGTTGGCCACGATGCTGGGGAACGTCATAGCAAACCCGATGGAGGAGAA
GTACCGGCAGCTCAAGAAAAATAATGCGGCGTTTGTGCGACGGGTGGGAG
GAGGTAAGGGAGGGAGGGAGGGAGGGAGCAAGGGAGAATTTATCTGTTGC
GCTTGAGGCTTTTGAATTCTCCTCCTCCTTCTCCTCCTTTTCCTTCTTCT
CCCTCTCCTTCTCCTCCTCCTTCTCCTCCTCATTCATTTCCTCTCCCTTC
CTCCAACCCTCCTCCTTTCTTCCAGTGTCGGGCACCGGGGCCATACTGCG
CGCTGCGGGTTTCGAGGAGTCCACAGACACATGGGATCTGCGTCCTTCTG
AGCAAGGTTGGAATTTGCTTTGCAGCGTCAAGGCGGAGCTCGACTCGTCG
ATTGCTACCCTCCCTCCATCCCTTCCTCTACCGGCTCCTGGGGCTGGTGC
GGGAGGTCTGGCGATGCCGCCCTTGATGGGGGGAGGAGGGATGGGGGGAG
GAGCAGGAGGGATGGACCCTGCCATGATGCAGCAAGCGATGGGTATGATG
CAGAACCCGGTGAGTTGGAGGGAAGGAGGAGGGGAGGGAAGGAAGTGAAT
GAGAAGGGTATGCTTGTCTTCGGTGGCGCTTTCGTATCAAAGGCCTGCTC
TTGTGTTTCTCATTCCCGTCGCCCAGATCCCGCTACTCCTCTCCCTCCGT
CCCTCCGTCCCTCCGTCCCTCCGTCCCTCCGTCCCTCCCTCTTCTTCTCT
TTCCCTCTCCGAAACCCCGTGCTGAGGTCAAAAGTATAAGGGTCCGACAG
ACTTCATTCCAAACCCTATCCTGCAGGGCAAGCCCTAGCGCCCCTCTCAC
GCACATTCTCTCTTCCCTCCCTCCCTCCTTCCTTTCTTTCTCTCCTCCTG
ACCTCTCTCACCAGGCCATACGTGATAGAATTATGCAGGAACTCCGTGCA
ACCAATCCCGCACTAGCCGGGCAAGCGGAGGCCATGCTCTCTAACCCAGG
AGCAATGGGACAGATGATGCAGGTAGACCCTTCCTCCCGCCCTTCCTCCG
CTTTCTTTCCTCCATCCCTGCTCTTCTAAACACAGAAGCTCACTCTCCTC
CTCTCCGCTTTACCCTCGTTTCCTCCCTTTCCTCCTTTCATGTTTTCCCT
CATCCTCAAAGGCACTGCAGTCCAACCCCCAGATGATGCAACAAGCGCAA
CAAGCCATGAGCAGGGGAGCAATGCCTGGCTTCCCTCCCCCTCCCGCTTC
TTCCACCACATTAGGAGGCAATACCCCTGCCTCCGGTGGTCTTGATCTCC
CGAGGCCTCCAGGTGGAACAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCG
ATGGGGCAAGGGCCACAGCGGTCGGACGCAGAGATGACGGAAGAGGAGTT
GATTCAGCAAGCAATCGAAAGATCCTTGCGCGACATGTAGAAGGGATAAA
CGAATCGGACAGAGTGATGTGCATGTTCTTCCCACACCCCCAAAGAAAGG
GGAGGAGGAGGGTGAAGAGCATTGCTCTAGTAAACACGTGACGTCGTGAC
GTCACGATGCTCCCATTGAGATGCGAACGTGTTGAATGTGAGACGAGAAA
AGTGCGGAGATGCAAATCCATGCCACGCCACAGAAATTTTTGGATGACTG
TATGGCTGCAGCTCGCTGCCCGAAGGAAAAAATAACCATCCGTACTCAGC
TAA

Coding sequence (CDS) from alignment at chr14:853902..857654-

>NO14G02890.2 ID=NO14G02890.2|Name=NO14G02890.2|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr14:853902..857654- (Nannochloropsis oceanica)
ATGCTCAACGACGACACCAAAACTCTAGCACAAAACAAAGTCAAGGAAGG
ATCGTGCATCCTGCTCTCCATTGCCGTGTCCGCCTCCGCCTCCCCCTCCC
CCAGCACCAGCATCTGTAACAGTGGCAGCGGAGCCGTGGCCGCTGCCGCT
CCTGCTCCTCCTCTTCCCAGCAGTGCTACTGCTGCTGCTCCTGCTCCTGC
TCCTGCTGCTTCATCCGCTCCCCAAACTGCTCAAGCTCCCATTTTCCCTC
CTCCTTCCACATCCACGGCCTTACCTGCACACATTGTAATCTTGCGGGCG
GCGATCGCGGGAGTGCGGACCTCCAACCCGCCGGAAGTGGGAGCAACGGC
CCTGAGGACGTTGGCCACGATGCTGGGGAACGTCATAGCAAACCCGATGG
AGGAGAAGTACCGGCAGCTCAAGAAAAATAATGCGGCGTTTGTGCGACGG
GTGGGAGGAGTGTCGGGCACCGGGGCCATACTGCGCGCTGCGGGTTTCGA
GGAGTCCACAGACACATGGGATCTGCGTCCTTCTGAGCAAGGTTGGAATT
TGCTTTGCAGCGTCAAGGCGGAGCTCGACTCGTCGATTGCTACCCTCCCT
CCATCCCTTCCTCTACCGGCTCCTGGGGCTGGTGCGGGAGGTCTGGCGAT
GCCGCCCTTGATGGGGGGAGGAGGGATGGGGGGAGGAGCAGGAGGGATGG
ACCCTGCCATGATGCAGCAAGCGATGGGTATGATGCAGAACCCGGCCATA
CGTGATAGAATTATGCAGGAACTCCGTGCAACCAATCCCGCACTAGCCGG
GCAAGCGGAGGCCATGCTCTCTAACCCAGGAGCAATGGGACAGATGATGC
AGGCACTGCAGTCCAACCCCCAGATGATGCAACAAGCGCAACAAGCCATG
AGCAGGGGAGCAATGCCTGGCTTCCCTCCCCCTCCCGCTTCTTCCACCAC
ATTAGGAGGCAATACCCCTGCCTCCGGTGGTCTTGATCTCCCGAGGCCTC
CAGGTGGAACAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCGATGGGGCAA
GGGCCACAGCGGTCGGACGCAGAGATGACGGAAGAGGAGTTGATTCAGCA
AGCAATCGAAAGATCCTTGCGCGACATGTAG

Synonyms

Publications